mRNA_L-elsbetiae_contig7666.16597.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7666.16597.1
Unique NamemRNA_L-elsbetiae_contig7666.16597.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7666.16597.1 vs. uniprot
Match: D8LTX1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTX1_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 5.890e-43
Identity = 105/150 (70.00%), Postives = 122/150 (81.33%), Query Frame = 3 
Query:  183 MSAKIAKQMMSRVDEMVTRASSATKQTGLATSKRKAAKRALLQAPSXXXXXXXXX-ASKSSRSVSK-NARNKPGRRSVGLLDQARRELRGKSRVARNVSLLSYNSRGDGQAAAAAGAVDGA-----GVVSKSRKAVEHLLQLDAKKHRGK 611
            MS+KIAK+MMSRVDEMV+RASSATK+T L+TSK+KAAKRALLQAPS          A+ SSRSV+K +ARNK GRR++GLLD+ARRELRGKS VARNVSLLSY+SRG+G+AA A GA  GA     GV SKSRKAVEHLL LDA+K  G+
Sbjct:    1 MSSKIAKRMMSRVDEMVSRASSATKRTDLSTSKKKAAKRALLQAPSKRKGSGSTSVATSSSRSVTKKSARNKAGRRTMGLLDKARRELRGKSLVARNVSLLSYSSRGEGRAAGA-GADSGAAKVGGGVASKSRKAVEHLLLLDARKAAGR 149
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7666.16597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTX1_ECTSI5.890e-4370.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7666contigL-elsbetiae_contig7666:400..2981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004010.1
Exons3
Model size1175
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7666.16597.1prot_L-elsbetiae_contig7666.16597.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7666 961..2799 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816851.7484257-UTR-L-elsbetiae_contig7666:399..9601622816851.7484257-UTR-L-elsbetiae_contig7666:399..960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7666 400..960 -
1691683861.591562-UTR-L-elsbetiae_contig7666:399..9601691683861.591562-UTR-L-elsbetiae_contig7666:399..960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7666 400..960 -
1622816851.7918553-UTR-L-elsbetiae_contig7666:2799..29811622816851.7918553-UTR-L-elsbetiae_contig7666:2799..2981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7666 2800..2981 -
1691683861.6338797-UTR-L-elsbetiae_contig7666:2799..29811691683861.6338797-UTR-L-elsbetiae_contig7666:2799..2981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7666 2800..2981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816851.7594435-CDS-L-elsbetiae_contig7666:960..12101622816851.7594435-CDS-L-elsbetiae_contig7666:960..1210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7666 961..1210 -
1691683861.605152-CDS-L-elsbetiae_contig7666:960..12101691683861.605152-CDS-L-elsbetiae_contig7666:960..1210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7666 961..1210 -
1622816851.7699814-CDS-L-elsbetiae_contig7666:1856..19601622816851.7699814-CDS-L-elsbetiae_contig7666:1856..1960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7666 1857..1960 -
1691683861.6142983-CDS-L-elsbetiae_contig7666:1856..19601691683861.6142983-CDS-L-elsbetiae_contig7666:1856..1960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7666 1857..1960 -
1622816851.779995-CDS-L-elsbetiae_contig7666:2721..27991622816851.779995-CDS-L-elsbetiae_contig7666:2721..2799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7666 2722..2799 -
1691683861.6235826-CDS-L-elsbetiae_contig7666:2721..27991691683861.6235826-CDS-L-elsbetiae_contig7666:2721..2799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7666 2722..2799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7666.16597.1

>prot_L-elsbetiae_contig7666.16597.1 ID=prot_L-elsbetiae_contig7666.16597.1|Name=mRNA_L-elsbetiae_contig7666.16597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MSAKIAKQMMSRVDEMVTRASSATKQTGLATSKRKAAKRALLQAPSKRKS
SRGAAASKSSRSVSKNARNKPGRRSVGLLDQARRELRGKSRVARNVSLLS
YNSRGDGQAAAAAGAVDGAGVVSKSRKAVEHLLQLDAKKHRGK*
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mRNA from alignment at L-elsbetiae_contig7666:400..2981-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7666.16597.1 ID=mRNA_L-elsbetiae_contig7666.16597.1|Name=mRNA_L-elsbetiae_contig7666.16597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2582bp|location=Sequence derived from alignment at L-elsbetiae_contig7666:400..2981- (Laminarionema elsbetiae ELsaHSoW15)
GGCGACCAGGCGTTAGGAGTCTGCAACAGGCCAGCACTAGCGTGGAACAC
GTGCCGTCAGGTGGTAGAAAACGTTAGTGGGTCTGATAGGGGTGAGAACG
AACTGGAAAGCTATTGACACTGGAGTAAATAAGTTGTTTTGACAACCTCT
CTGGGCAGACGAGGACAGAGGTGACCACCAACATGTCGGCGAAGATAGCC
AAGCAGATGATGTCGAGAGTGGACGAAATGGTCACGAGGGCATCGTCTGC
CACGAAGCAGGTGAGAAGGAGACTTAAGCGCAGGTGTATCGATGTAGTGT
GTGTGCGTCTTGGTCGGTGTCTCTGGTGTTCAAAGCAGGGTACGGCGGGA
GTCATCTCCTGAGGATTGTGTACTAAGTACTACACGTACGTTGTGTATCT
CAACTGAAAAACACGGCTATCCCCCACAACTCCGAGCCTGATGCTTTGTC
GGAGTCCTCTAGTGTCTGTTTGTTATTGATATCGGAGTACCTCGGCATCT
TTCGAAAGTACTCTCTGGCTGTGGACCGTTTGAAGCGACCTTGTCTGCCT
GTGTCCTCGTGTTGCTGAAGGCCAGCGAGCCGTGGAACCAAAAGCTTTTC
TAAGGTGCATAGCGTTTAGATTATTGGGCTGCAGTCGGCTAATACCTACA
CCTGTAGGCTCTCTACCGAAGCAGTATGCTGCCACTCCTCGTGCCCCTGG
GATGCCCATCGAGTAATTGGTGTTTTGTCGCGCTTGCCGCAACCAGTCTC
TACAATATGCCCCTGTAGCCACCGGGGCGCATGAGTAGACAGCAGTGATC
CAGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAACAGCCGCCACCC
CCCCCCCCCGGAAAAAAAACCGGCGCCCACCCCCCCGCCGAACANNNNNN
NNNNACAATTCCCCCCTGGAGCCCCCGGGGCGCATGAGTAGACAGCAGTG
CTCCCGCCCCCCCCCCCCCCCTCCGCCGCCCCCGGACATATGCCATCGCA
CCTTCGACGTTGAAAATCAAGACGGGCCTTGCCACGAGCAAGAGAAAGGC
GGCCAAACGGGCGCTGTTGCAAGCGCCTTCGAAGCGAAAAAGCAGCAGAG
GTGCAGCAGCATCCAAGTCTAGCAGGTTTGGCCAAATACAGTAGTCTACG
CGGGTTTTTTGTCTTTTAAGCTAACATATGGGATAAAGTATGGAAACCGT
TTGGGGGGGTCGGTGGTTGGGGTTAGGGTTAGGGTTAGGGTTAGAGTTAG
TAGTATAAATTAATTTCTGCGTAGGCGGCCTGCCAAATATCGACGAAATG
TTAATGTTCTAAAACGCTCAATATCTACCTAGTTGTCAGCGGCCAAATGT
ACGTTTGACGCGTTAAAAAAACGTTCCAGGTGGTCTGTCGTAGACACACT
AATCCCCCCTCGCCGTCCCAAGCTACAGGCACAAAATCCACAATCGTTTT
ATTGTAGGTGCGTTGTCCTGTTTGCATGGGAGAGAGAGAAAGGGAGGGAA
GAAAAGGCAACGTTTTGAATATGGACCCTCGGATGGTGAATCCAGTGGCA
CTATAGTATCTACATCTCTTGGAATCAGATTGGTTGATTTTGTGTGACTG
GAACCTGGGAGCTGGGAGAAATATTGCAGCTCGAAACCGCCTTTCCGAAC
TACTACTGTAAGCCAGAAGCTTGAAGATGAAATGATGAAATACGTTAAGT
GGCCCTCGCCTGACTATCGATGCATACCGCTCGTCGTTGCCCCTTGCATC
CTTGCGTATGCTGTTTGACAGGAGTGTTTCTAAGAACGCAAGAAATAAGC
CAGGGCGGCGGTCTGTGGGTCTCCTTGACCAGGCCCGGCGAGAGTTACGG
GGCAAGTCTCGGGTGGCGCGGAATGTTAGCCTGCTATCATACAATTCTCG
GGGGGATGGTCAGGCGGCGGCGGCGGCGGGGGCGGTCGACGGCGCTGGCG
TTGTCAGCAAGTCGCGTAAGGCCGTCGAGCACCTGTTGCAATTGGACGCA
AAGAAGCACCGGGGGAAATGAGATTGAAACGTTGTTTGTGGTGCGTGTGC
TTTTGAGTGGTTGTGCTCGTGCTGCTTCTCTTTGCTCTTCACCGATAGTC
CCGGCTGTACTTGTAGCGCCATCGCTCGACGCCTGGACCTCGTTTAAGGT
TGACTGCTGTGTTCGGACTGGCGAACTGCATTTTTTCGCCGGGGCGGCTT
AAGATAAGACGGTTTGCGCAGGTTTGCATACTCGGCGGTAGCTGTTGCTG
CCTGTGCTGGTGCTCTCGTCGTAGCCGCACGATATGCCGAATCCGCTAAA
CAGAAAGCATGCTGCACGACCGCGACAGTATGCTCAGTGCAGACCTAAAG
CTCAATAAAAACTGGTTGTGGCCGCTGCTGCGTTTTCACCACCGGGCTAC
AGCTATTCGCCCGTGTGCACCTCCGCTTTCTCGCGCGCGCGCACGCACGT
ACAGCCGTGTGACAAAACTTGTCTTCCCCGAGCCGCTTGAGAGTCTTGTT
TCCTTCACAGCATCGGAACATTCCGAATCGAGCTGAACGTGTTGTATTTT
CGAGACATGAAACCATGCAGACTCACCCGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7666:400..2981-

>mRNA_L-elsbetiae_contig7666.16597.1 ID=mRNA_L-elsbetiae_contig7666.16597.1|Name=mRNA_L-elsbetiae_contig7666.16597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig7666:400..2981- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCGAAGATAGCCAAGCAGATGATGTCGAGAGTGGACGAAATGGT
CACGAGGGCATCGTCTGCCACGAAGCAGATGTCGGCGAAGATAGCCAAGC
AGATGATGTCGAGAGTGGACGAAATGGTCACGAGGGCATCGTCTGCCACG
AAGCAGACGGGCCTTGCCACGAGCAAGAGAAAGGCGGCCAAACGGGCGCT
GTTGCAAGCGCCTTCGAAGCGAAAAAGCAGCAGAGGTGCAGCAGCATCCA
AGTCTAGCAGACGGGCCTTGCCACGAGCAAGAGAAAGGCGGCCAAACGGG
CGCTGTTGCAAGCGCCTTCGAAGCGAAAAAGCAGCAGAGGTGCAGCAGCA
TCCAAGTCTAGCAGGAGTGTTTCTAAGAACGCAAGAAATAAGCCAGGGCG
GCGGTCTGTGGGTCTCCTTGACCAGGCCCGGCGAGAGTTACGGGGCAAGT
CTCGGGTGGCGCGGAATGTTAGCCTGCTATCATACAATTCTCGGGGGGAT
GGTCAGGCGGCGGCGGCGGCGGGGGCGGTCGACGGCGCTGGCGTTGTCAG
CAAGTCGCGTAAGGCCGTCGAGCACCTGTTGCAATTGGACGCAAAGAAGC
ACCGGGGGAAATGAGAGTGTTTCTAAGAACGCAAGAAATAAGCCAGGGCG
GCGGTCTGTGGGTCTCCTTGACCAGGCCCGGCGAGAGTTACGGGGCAAGT
CTCGGGTGGCGCGGAATGTTAGCCTGCTATCATACAATTCTCGGGGGGAT
GGTCAGGCGGCGGCGGCGGCGGGGGCGGTCGACGGCGCTGGCGTTGTCAG
CAAGTCGCGTAAGGCCGTCGAGCACCTGTTGCAATTGGACGCAAAGAAGC
ACCGGGGGAAATGA
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