mRNA_L-elsbetiae_contig7648.16576.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7648.16576.1
Unique NamemRNA_L-elsbetiae_contig7648.16576.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Match: D7FQY7_ECTSI (Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY7_ECTSI)

HSP 1 Score: 416 bits (1069), Expect = 3.160e-140
Identity = 220/301 (73.09%), Postives = 241/301 (80.07%), Query Frame = 2 
Query:  224 IAHSRRSCGLDHHEAQACNSGWPTTQKPKTGSYERSPSNSISSKVDALQTLALDVRGGGGGSSEEASVMTLFIRVLVPGFGREKNKDGELDLEGGGLVRRLKRLVSGVLRTMRRSPASAGTEGGE-ENIKAKKXXXXXXXXAATASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKPSLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPGQAQQWIYHDDIC 1123
            +AH RRS  L    A++CN G PTTQ  ++G  E           DAL+T AL VRGG   S E+ S+ TLF+RVL+PGF R+K  DGELDLEGGGL+RRLKRLVSGV R +R SP       GE +N+  KK        A T SHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRV+FP++YPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLS RDWKP+LTVMSLALSILSMLSSAKEKR PEDNA+HAEARPGQAQQWIYHDD+C
Sbjct:   33 LAHGRRSSALTSSNARSCNPG-PTTQG-ESGHGE-----------DALETFALVVRGG---SDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVPITEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 317
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BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Match: A0A835ZFF1_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF1_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.090e-76
Identity = 135/252 (53.57%), Postives = 177/252 (70.24%), Query Frame = 2 
Query:  380 LDVRGGGGGSSEEASVMTLFIRVLVPGFGREK---NKDGELDLEGG--GLVRRLKRLVSGVLRTMRRSPASAGTEGGEENIKAKKXXXXXXXXAATASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKPSLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPGQAQQ-WIYHDD 1117
            L +RGGG GS    S   LF+++ +PG+G +    + DG+  L     GL +R+KR +S +    ++ P   G +GG+    + K             HL   +RPG+ANYRIQKEL+EFM NPP+ C+VSVGK+++VWIITI+GA+GTI+ GEKF+LRV FP++YP KPP+VYFLQ PPPP+H+H+YTNGDICLSLL  +DW P+LT  +LALSILSMLSSAKEKR P DN  +A  RPGQ+Q  WIYHD+
Sbjct:  127 LMLRGGGKGS---LSKFQLFMQIFIPGYGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALFSGGKKQPTK-GAKGGKGKGGSSKDD-------TVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLG-KDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 366
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BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Match: A0A0G4GQN8_VITBC (UBC core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GQN8_VITBC)

HSP 1 Score: 218 bits (555), Expect = 1.230e-64
Identity = 101/160 (63.12%), Postives = 128/160 (80.00%), Query Frame = 2 
Query:  647 ATASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKPSLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPG-QAQQWIYHDDIC 1123
            A   HL +++RPG+ NYRIQKELK+F+  PPD C+++VG NIRVWIIT++G EGT+Y GEK+RL++ FP +YP KPP +YFLQ  P P+H H+Y+NGDICL+LL   DWKP+LTV S+ALSILSMLSSAKEK+ P DNASHA+ + G Q   W+YHDD C
Sbjct:   50 AAKDHLRRSFRPGHVNYRIQKELKDFLTTPPDHCEIAVGSNIRVWIITLTGVEGTLYEGEKYRLKIVFPPEYPLKPPIIYFLQ--PTPRHPHVYSNGDICLNLLGT-DWKPTLTVASVALSILSMLSSAKEKKLPLDNASHADLKAGGQQHNWMYHDDKC 206
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BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Match: A0A0G4GVI6_9ALVE (UBC core domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GVI6_9ALVE)

HSP 1 Score: 213 bits (542), Expect = 9.140e-63
Identity = 102/160 (63.75%), Postives = 127/160 (79.38%), Query Frame = 2 
Query:  647 ATASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKPSLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPG-QAQQWIYHDDIC 1123
            AT++HL+  + PGN NYRIQKELKEF+ +PP  C+VSVG N+R WIITI G EGT+Y  E ++L+V FPD+YP  PP+VYFL+  P P+H H+YTNGDICL+LL   DWKP+LTV ++AL+ILSMLSSAKEK+ P DNA+HAEA PG Q   W+YHDD C
Sbjct:   46 ATSNHLKAKWTPGNPNYRIQKELKEFIKSPPPNCRVSVGSNLRAWIITIKGVEGTLYEKETYKLKVVFPDEYPLVPPSVYFLR--PAPRHPHVYTNGDICLNLLGT-DWKPTLTVSAIALAILSMLSSAKEKKIPLDNAAHAEAPPGGQQHNWMYHDDKC 202
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BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Match: A0A7S1TYR4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYR4_9STRA)

HSP 1 Score: 209 bits (532), Expect = 9.840e-61
Identity = 102/153 (66.67%), Postives = 123/153 (80.39%), Query Frame = 2 
Query:  662 LEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKPSLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPGQAQQ-WIYHDD 1117
            L K  + GN  YRIQKEL+EF+ NPP  CKVSVG NIRVW +T++GAE T+Y GE+++LRV FP  YPTKPP+VYFL+  PPPKH H+YTNGDICLSLL  +DW+P+LT  SLALSILSMLSSA+EKR P DNA HA++ PG+ Q  W+YHDD
Sbjct:   91 LGKRVKRGNPLYRIQKELREFVDNPPPNCKVSVGDNIRVWTVTLTGAEDTLYEGEEYKLRVTFPTGYPTKPPSVYFLK--PPPKHPHVYTNGDICLSLLG-KDWRPNLTASSLALSILSMLSSAREKRLPNDNAQHADSPPGKPQDGWMYHDD 240
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BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Match: W7U274_9STRA (Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U274_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.140e-60
Identity = 97/156 (62.18%), Postives = 130/156 (83.33%), Query Frame = 2 
Query:  659 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKPSLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPGQAQ-QWIYHDDIC 1123
            HL K +R GNAN+R+QKEL+E++ANP +  +V+VG NIRVW++T++GA+GTI+AGEK++L+  FP DYP+KPP+VYFLQ  PPP+H+H+YTNGDICL+LL  RDW+P++T   LALSILSMLSSA+EK+ P+DN  HA+  PG+ Q  W+YHDD C
Sbjct:  162 HLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQ--PPPRHEHVYTNGDICLNLLG-RDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
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BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Match: A0A7S2R2N4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2N4_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.700e-57
Identity = 97/161 (60.25%), Postives = 122/161 (75.78%), Query Frame = 2 
Query:  644 AATASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKPSLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPGQAQQ-WIYHDDIC 1123
            +A A H+ K  +  N NYRIQ+ELKEF+ +PP   KV+VGKNIRVWIIT+ GA+ TIY G+KFRLRV FP DYPT PP+VYFLQ  P P+H+H+YTNGDICLSLL  +DW+P++T  S+A+SILS+LS A+ K  P DNA +   +PG  Q  W+YHDD C
Sbjct:   52 SAAAVHIAKELKSNNPNYRIQRELKEFLKSPPPNLKVNVGKNIRVWIITLIGAKNTIYDGDKFRLRVQFPADYPTSPPSVYFLQ--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIAMSILSILSGAQRKSLPMDNARNCLNKPGAKQDDWVYHDDNC 209
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BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Match: A0A7S4RNY0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNY0_9STRA)

HSP 1 Score: 200 bits (509), Expect = 5.310e-56
Identity = 96/156 (61.54%), Postives = 122/156 (78.21%), Query Frame = 2 
Query:  659 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKPSLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPGQAQQ-WIYHDDIC 1123
            HL    +  + NYRIQKEL+ F+ +PP    V+VGKNIRVWI+TI+GA  TIY GEK+RLR++FP +YPT PP+VYFL  PP PKH+H+YTNGDICLSLL  +DW+P++T  SLA+SILS+LSSA+EK  P DNA+H++ +PG  Q  WIYHDD C
Sbjct:  196 HLSAKLKSNSPNYRIQKELRAFLTSPPPNLSVAVGKNIRVWIVTITGASNTIYEGEKYRLRMSFPSNYPTSPPSVYFL--PPTPKHEHVYTNGDICLSLLG-KDWRPTMTGQSLAVSILSLLSSAREKSLPMDNAAHSQNKPGGNQDNWIYHDDNC 348
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BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Match: A0A7S4A863_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A863_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.240e-55
Identity = 121/261 (46.36%), Postives = 160/261 (61.30%), Query Frame = 2 
Query:  362 ALQTLALDVRGGGGGSSEEASVMTLFIRVLVPGFGREKNKDGELDLEGGGLVRRLKRLVSGVLRTMRRSPA--SAGTEGGEENI----KAKKXXXXXXXXAATASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKPSLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPGQAQQ-WIYHDDIC 1123
            A+ T AL V GG   +S            L P     + K G LD  GGG +    RL   + +T+R +      G +GG+E+     K K          A AS  ++  +      RI +EL +F+ NPPD CKVSVGKN+ VWI+T++GAEGTI+AGEK++LRV+FP DYPT PP+ YFL+  P P+H H+YTNGDICL+LL    W+P++TV  L+LSILSMLSSAK K  P+DNA HA + PG+ Q+ W+YHDD C
Sbjct:   86 AMHTRALRVSGGANATS------------LAP-----EAKAGLLDGGGGGSL--ATRLFGVIRKTVRMTLRLLGFGKDGGDEDTAPATKKKVAAKKKRRSPARASPAQRQAQ------RISRELTDFVENPPDGCKVSVGKNLNVWIVTMTGAEGTIFAGEKYKLRVSFPADYPTSPPSCYFLE--PTPRHPHVYTNGDICLNLLG-NGWRPTITVAQLSLSILSMLSSAKTKGIPQDNAVHAASAPGKPQEGWMYHDDSC 318
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BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Match: A0A6U3E3N1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3E3N1_9STRA)

HSP 1 Score: 193 bits (491), Expect = 3.290e-55
Identity = 92/156 (58.97%), Postives = 123/156 (78.85%), Query Frame = 2 
Query:  659 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKPSLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPGQAQQ-WIYHDDIC 1123
            H++K  +  + NYRIQ+ELK F+++PP   KV VGKNIRVWI+T+SGA+ TIY GE F+LR+AFP  YPT PP+VYFL  P  P H+H+YTNGDICLSLL  +DW+P++T  S+A+SILS+LSSA+ K  P DNA H++ +PG+ Q+ W+YHDD+C
Sbjct:   51 HVKKELKATSPNYRIQRELKSFLSDPPPNLKVKVGKNIRVWIVTMSGAKDTIYEGETFQLRIAFPAAYPTVPPSVYFLP-PNIPLHEHVYTNGDICLSLLG-KDWRPTMTAQSIAVSILSILSSAQSKSLPMDNARHSQNKPGEYQKDWVYHDDLC 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7648.16576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQY7_ECTSI3.160e-14073.09Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus si... [more]
A0A835ZFF1_9STRA1.090e-7653.57Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A0G4GQN8_VITBC1.230e-6463.13UBC core domain-containing protein n=1 Tax=Vitrell... [more]
A0A0G4GVI6_9ALVE9.140e-6363.75UBC core domain-containing protein n=1 Tax=Chromer... [more]
A0A7S1TYR4_9STRA9.840e-6166.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7U274_9STRA3.140e-6062.18Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidace... [more]
A0A7S2R2N4_9STRA1.700e-5760.25Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4RNY0_9STRA5.310e-5661.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4A863_9STRA1.240e-5546.36Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6U3E3N1_9STRA3.290e-5558.97Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7648contigL-elsbetiae_contig7648:3685..9472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score420.2
Seed ortholog evalue9.2e-115
Seed eggNOG ortholog2880.D7FQY7
Preferred nameUBC18
KEGG rclassRC00064,RC00141
KEGG koko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
KEGG ReactionR04112
KEGG Pathwayko04120,ko04138,ko05146,map04120,map04138,map05146
Hectar predicted targeting categorysignal peptide
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0427@2759
EC2.1.1.297,2.3.2.25
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012,ko04121,ko04131
Ec32 ortholog descriptionUbiquitin-conjugating enzyme
Ec32 orthologEc-09_003260.1
Exons9
Model size1584
Cds size1047
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816849.7878692-UTR-L-elsbetiae_contig7648:3684..41421622816849.7878692-UTR-L-elsbetiae_contig7648:3684..4142Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7648 3685..4142 -
1691683860.1428633-UTR-L-elsbetiae_contig7648:3684..41421691683860.1428633-UTR-L-elsbetiae_contig7648:3684..4142Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7648 3685..4142 -
1622816849.8936634-UTR-L-elsbetiae_contig7648:8272..82731622816849.8936634-UTR-L-elsbetiae_contig7648:8272..8273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7648 8273..8273 -
1691683860.258673-UTR-L-elsbetiae_contig7648:8272..82731691683860.258673-UTR-L-elsbetiae_contig7648:8272..8273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7648 8273..8273 -
1622816849.9057918-UTR-L-elsbetiae_contig7648:9394..94721622816849.9057918-UTR-L-elsbetiae_contig7648:9394..9472Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7648 9395..9472 -
1691683860.2724483-UTR-L-elsbetiae_contig7648:9394..94721691683860.2724483-UTR-L-elsbetiae_contig7648:9394..9472Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7648 9395..9472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816849.8017488-CDS-L-elsbetiae_contig7648:4142..42011622816849.8017488-CDS-L-elsbetiae_contig7648:4142..4201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 4143..4201 -
1691683860.153974-CDS-L-elsbetiae_contig7648:4142..42011691683860.153974-CDS-L-elsbetiae_contig7648:4142..4201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 4143..4201 -
1622816849.8138332-CDS-L-elsbetiae_contig7648:4545..46191622816849.8138332-CDS-L-elsbetiae_contig7648:4545..4619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 4546..4619 -
1691683860.1627603-CDS-L-elsbetiae_contig7648:4545..46191691683860.1627603-CDS-L-elsbetiae_contig7648:4545..4619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 4546..4619 -
1622816849.8241184-CDS-L-elsbetiae_contig7648:5017..50911622816849.8241184-CDS-L-elsbetiae_contig7648:5017..5091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 5018..5091 -
1691683860.1744823-CDS-L-elsbetiae_contig7648:5017..50911691683860.1744823-CDS-L-elsbetiae_contig7648:5017..5091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 5018..5091 -
1622816849.8357503-CDS-L-elsbetiae_contig7648:5470..56151622816849.8357503-CDS-L-elsbetiae_contig7648:5470..5615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 5471..5615 -
1691683860.184927-CDS-L-elsbetiae_contig7648:5470..56151691683860.184927-CDS-L-elsbetiae_contig7648:5470..5615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 5471..5615 -
1622816849.848808-CDS-L-elsbetiae_contig7648:6065..61301622816849.848808-CDS-L-elsbetiae_contig7648:6065..6130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 6066..6130 -
1691683860.205368-CDS-L-elsbetiae_contig7648:6065..61301691683860.205368-CDS-L-elsbetiae_contig7648:6065..6130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 6066..6130 -
1622816849.8611798-CDS-L-elsbetiae_contig7648:6631..67501622816849.8611798-CDS-L-elsbetiae_contig7648:6631..6750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 6632..6750 -
1691683860.2240067-CDS-L-elsbetiae_contig7648:6631..67501691683860.2240067-CDS-L-elsbetiae_contig7648:6631..6750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 6632..6750 -
1622816849.8719554-CDS-L-elsbetiae_contig7648:7205..74911622816849.8719554-CDS-L-elsbetiae_contig7648:7205..7491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 7206..7491 -
1691683860.236954-CDS-L-elsbetiae_contig7648:7205..74911691683860.236954-CDS-L-elsbetiae_contig7648:7205..7491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 7206..7491 -
1622816849.8825333-CDS-L-elsbetiae_contig7648:8047..82721622816849.8825333-CDS-L-elsbetiae_contig7648:8047..8272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 8048..8272 -
1691683860.2477565-CDS-L-elsbetiae_contig7648:8047..82721691683860.2477565-CDS-L-elsbetiae_contig7648:8047..8272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7648 8048..8272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7648.16576.1prot_L-elsbetiae_contig7648.16576.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7648 4143..8272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7648.16576.1

>prot_L-elsbetiae_contig7648.16576.1 ID=prot_L-elsbetiae_contig7648.16576.1|Name=mRNA_L-elsbetiae_contig7648.16576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=349bp
MMGFGPTLAFLLLVSPFNVVANVVAAAVAGHGRASPTLGSTNAGAERTIA
HSRRSCGLDHHEAQACNSGWPTTQKPKTGSYERSPSNSISSKVDALQTLA
LDVRGGGGGSSEEASVMTLFIRVLVPGFGREKNKDGELDLEGGGLVRRLK
RLVSGVLRTMRRSPASAGTEGGEENIKAKKKGKGKGKGAATASHLEKTYR
PGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEK
FRLRVAFPDDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSPRDWKP
SLTVMSLALSILSMLSSAKEKRNPEDNASHAEARPGQAQQWIYHDDIC*
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mRNA from alignment at L-elsbetiae_contig7648:3685..9472-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7648.16576.1 ID=mRNA_L-elsbetiae_contig7648.16576.1|Name=mRNA_L-elsbetiae_contig7648.16576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5788bp|location=Sequence derived from alignment at L-elsbetiae_contig7648:3685..9472- (Laminarionema elsbetiae ELsaHSoW15)
GCCAGGCCGACGCACGGGCAGGCTGAGGCTCCCAGGTCAGCATCCTTCGC
GGAAGTTGCTGGTTTACCAACTCTTGAGGTACGCAATGAAGCTAATTGAC
TCCATTCCTGAAGTGTGTGTGAGCAGTACATATTTCAAAGAGCTCGCAGT
ACTATCCTTCACTTTGTACCGAGAGAGTACGGTAACGGAACATGTTTATG
TACATATATATATATACATACGGCGTACGGCGTGGTTGCGCGACGAGGAT
AGATTTCCCATACATGGGCATGTCTCGCGTGCTTCGACTCCGGAAAGTAT
ATCACCCACAACAGTATTCGCTTGGTGGAGCCACTGTTTGGTCCTTCCTA
CATACATAGCTGTCTCGTGTACGGCGTTCCACATGTCATCAGGAGCGCGA
CGGTTGCCCGTGGCTCAAGCCATTTGCCGCCAATGCCTCCACCATTCGCT
TGCCAATTCCTTGTACGACAGTGTGGTCGCTTTTAGCTTCAACTACATCT
TTCAAAGCTTAGTTGTTGCGTGATCGTGACGGTATTATCAACGATTTACT
CTTGTATTACACAGATAGTAGTCACTAAATACCTGGTATCTGGTACTGGC
TGAAGCAACACGCCGGCACGACGCTTCCACTGCATATATTGAAAGAAAAA
CAATACTTAAATATCTATGTGTAATCGAATCGGTCGCCCCGGTGGTCTAG
TGGGTAACCTCGAAACTTGGTAATAGCAAAGGTCGTGAGTTGAATCCCTC
TGGGGTGAAAAAATTGCAAGTTTGCAGGTGAGCGAATAAAGCTGAAAAGC
TCGTGAGTTAACAAACTTTCACGAATAGATAAAGCTGAAAAGCTCGTGCA
AACTTCGACTTCACCGTTGACGAGGGAAGGGATAGCCGTACCCTTCTCAC
GATAAAAAATCTAGGCAAAGCACCGCAGGAGGAAGGTGGGGCAAAAAACA
GAAAGAAAAAGAAGAATAAAGCCCCAGTGTTTGCCCCCTCCTGTGTAACC
CCGGCGGACACGTCATGCAGTACAAGAAGCAGGACCGCAACGTGCATGTT
GTACACACACCGCAACGTGTGGGAGGCGCCCGAATAAAAGGGACGAAAAC
ACAACACACACGCACTTCTCGAAATATCTTGAGCCATTGACGATCCCACC
GGCAAATGCCTTCTGCCTTCTGTTCTCGTTTGTATCTGCCAAACAAAAGT
ATGATGGGCTTTGGTCCAACATTGGCCTTCCTCCTCCTGGTTTCGCCGTT
CAACGTGGTGGCCAACGTGGTGGCTGCCGCCGTTGCTGGGCATGGGCGGG
CATCTCCAACATTAGGGTCCACCAACGCTGGTGCAGAAAGAACGATAGCT
CATAGCAGGCGATCCTGCGGCCTTGATCACCACGAGGCTCAAGCATGCAA
CTCTGGATGGCCAACAACCCAAAAGGTGAGGTCTGCCACTGCTGCTGGTC
CGCTTTGTTTTAAGGTTCGCTGTTGGAACCCGCTGAAACCGCGCACCACT
TTCGTCGACTCTGTCTTCTAAACCGTGCTTTATTCCCCCGTAAGTGCAGC
CTGATGATATGGCGTTGTTGCCAGACATTTTGATTTTCCACGGGCACCGA
GTGGACGTCGAGAGTTCCATTACACATGGGTACGGGGTATGGGGACTCTA
CTTTCCCGACGTCTGATAGATATACATTCCCATTCAGATGGATCGCTCAC
CGCAGTGGAAAATGAGTAGTGATCGGGCAAACAGGAAACCTTTTGACAGT
AGACAAACGACACTGACTGTACTCGTCTGTGCACCCCATGTATGCTTGCT
GTGAACGTGGTGGTGTTTAATACCCGTTGTGGGTGAAAACGCAGAGACTC
GTCTGAACAAATACAGTTCTGAACTGCTGGATAACGTAGCTCAACACATG
ACAGCGAAATGGGTGCGATTCAAACGTGCCCTTGCAACCCGCAAACAAGC
TACGCCATGCCCCCCGTGTGTCCTCCCTCAGCCCAAGACTGGCAGCTACG
AGCGCTCGCCAAGCAATAGCATAAGCAGTAAAGTGGACGCTTTGCAAACT
TTGGCCTTGGATGTACGAGGAGGCGGTGGGGGCAGCAGCGAGGAGGCATC
GGTGATGACTCTCTTTATAAGAGTCCTTGTGCCGGGGTTCGGAAGAGAGA
AAAACAAGGATGGGGAGTTGGACTTGGAGGGAGGCGGGCTTGTCCGAAGG
TTGAAGCGCTTGGTGTCTGGGGTGTTGCGCACGATGCGGAGATCGCCAGC
GAGCGCTGGAACCGAGGGTGAGAAGTGTGCAAAGACGAGGTCCGTGTTTG
ACACCGGCAGTGGTGACTGCAATACACGAGCCCGCAACTATACGTTGCGC
TTGGTGTTGCCACGACGTACGTAATGGAGTATTTGATAGTTCACTTCTTC
ACCCAGGGCGAGCACTACGCTTTCCGAATTATGTTTCCTTGTGTGGTCGC
TGCGAATAGAATATCAGCGTATACCAAGCGGTACTATCGCGTCCCGGAAA
GTCCATTTTTTTTCTCACGGGCACTCTTTCGTTCAAGAGCACTTTCACCA
AGCATCTAGTCTGAATATTCGCATGCCCGTCCAGCCGCTGCTTCGGAGAG
GCGAACACACACTCAATATTGGCGTTACTCTGGGGCTTTAGGCTTTATTT
GTCATTATGCGCGGTTGAGGTGGAAGCACCAACTCAATAAGTTATTTTCG
ACCACCTGATTGTCTCCTGTAGGCGGGGAAGAAAATATAAAGGCCAAGAA
AAAGGGCAAGGGGAAAGGCAAGGGAGCAGCGACCGCGTCCCACCTGGAAA
AGACCTACCGACCAGGAAATGCCAACTATCGGATACAAAAGGTGTGCCCT
GTATCCGTTCTCTCTGAAGTTGTATGTAATGCCCGTTGAAGGTTTGTGGA
GCAAGGCGCTCTTGATTCATCGCTTTGCTTCCTTTGCGCGTTGTGTGTGT
CCTCCCTCGCGCGGTGGGCATCCCTGGTTTGATCGACCGACGATGCCGCC
TGAAACGAAATAATTGTGGGGAAGAAGGGCTAGCCGCCTGCGCGCTTGCA
AGGATAACTACAAGTCTTGTTTGCAGTGAATCTCAACGTATGTATTTGGG
CACAGCGAGAAGCGGAGCACAGCACCTTGCCCCCTCCTTTGGGCTGTCTG
TTGTGGAGGTTTGTGTTTTTTTTGTCGGTTGTACGCACGTATTCTCACCC
CACAAGCTACCTTGTGGAATGCTAGAGCCCACCGCACGCGTTCGGTATTG
ACATCTTTTTTATCGGACCAATACCAACGGAAACGGTCAACCAGCTTGTT
TGTTTGCTGATTTTTTCGTCGCCTGCCCACCCACCTCGCTAGGAATTAAA
AGAGTTCATGGCCAACCCACCGGATTGCTGCAAAGTTAGCGTCGGCAAGA
ACATCAGGTGGGCAGAAGGGTGTTGCCGATCATGCGATTTGTCTTGGCTT
TGTGTCACGTATGTTGCACATATTATTCGTTCCAGCATCCGCGCCTTTGT
TATTTTTTTGGCACACTACTGGAGGATCAAGCACCCCAAGGTTCAAGCGA
GTGCCCGCGGGACATCTCATCTATTTAGTGTTGTTTTTTTCTAGGGAAGG
GGCAGAGGTTTCTCTGATGCCGCTGTGTATCTTCGTAGGCTTGTCAAATC
TTGCACGCTTTTTGGCATTCGCACTGCTGCCGTTTTAAAACTCTGATCGA
GAGCAACTGTTGATGATGCCGTGCAAGAGAAGATTCGTTCGGGGATGTGT
GGATGCGTTATCTCTAGTTTGATTTTAGTTAACGAGTAGTTCATTAGCTC
CTGCTCCTTGACAAGTGCTAGTACGTTTACTGCTTTCCTCGTCCCTGTTA
TGATCAGAGTGTGGATTATCACCATCAGCGGAGCGGAAGGTACGATCTAC
GCCGGGGAAAAGTTCCGCCTGAGGGTGGCCTTCCCCGACGACTACCCGAC
CAAGCCGCCAGCGGTGTACTTCCTGCAGTCTCCGCCGCCGCCAAAGCACC
AGGTGGGCCAGCGTCGTTCCCAGCCTTCTTCGTTGAAATGGTGTGTATGT
ACGATGTCGTCCATGCATAACTCGTGGCAATCCCTCGGCCAGCCCATGCT
ACGTGCATACATGCGTACGGCTGTGCTCCCGCAAAAAATGGTTATCGTTT
CGTTTGGCATTTTTTTGTTCAGTTATCTTGTTCCTGGGGTTCGTGCCTCT
GATTTGTCCAGAACACTTTATGCTATTGTTCGACACATTGAACATCTTCA
AACTGGCAATTGAATATTGTCACTTGATTGGACTTAGTGTTTTACTACTG
CTGTTCCTCACGTCCGTCGTTTTGTCGCGTGTTTTTTCTGTGGTGATACC
GATCAATAACTCTCTCTTGGCCGTCTCTCAGCACATTTACACCAATGGAG
ACATCTGCTTGAGCTTGTTGAGCCCTAGAGACTGGAAGCCGAGTCTAACC
GTGATGTGAGTCAGGCGGCAACTCGAATGCGACGGTATTGGCAAGTCTTG
GTGCTTATCTTTTATTCTCTTGGATCGACTGCGTTGGACTTGTGTACCCG
GCGCCACTATCGGCATGCGTAGGTATGCAGGAAGGAAGCGCTGCGGGGTG
CTAAAGTTGAGAGATACCGACGGCTGTGCGCGTGTTACAATAGACAGCAG
TCCACAGGTACTGTAGCCTCTTAAAAATAGCTATCAATTTTGTTATCGTC
GCCCGCGAACAGTTGTGCTTCAGCAAGGTTGCTTTCACTCTGGAATTGCA
GGCTCGGTTGGGAGTGTGTATGTTTCTGGGGCAGGAGGTCCGACTGACGG
TGCTTGTGTTTTGTCTTCGTTTGTGTCCTCTGTGCCGCTCTGCGATCTTT
AAGGTCTCTGGCGTTGAGCATCCTTAGCATGCTGTCCAGCGCCAAGGAGA
AGCGCAATCCAGAAGACAATGCATCACGTGAGCTGTAAATTCATACAAGT
ATGTACCGATATAAATACCTGGTAGAACAATACCAAGGTGGTGGAATGGT
TCGACGATGTAGTCCTGAAACACGAAGTGTGTGAATGGCATCTAAAAGCG
GTCGAACATATCCAATACCCCGGGGAAAGATTGAGTCCGTGTCGCCATTT
TCGCCCTACACCATCCCTCGAGCATGAAGCAGTTAATTGAGATGTTGATC
TATCCGGTTAGACGGGAATGATGCATGAATCGTTGATTATTTGAAGAACA
AGTGTTGTCCAAATAACGCCAAGCCCGCTTCCCCCACCCGGCGGCTGTAA
ACCATGTTCATTGCTTCTCAGACGCCGAAGCAAGACCAGGGCAAGCTCAA
CAATGGATATACCACGATGATATATGCTAGTTTCGGGCTGCGCTTCTAGC
GCGTTTGCCGATAGGGGAGTCAGTCATCCTGTATGTTTGTTCGTGGAAGC
AGGAACACCTTTGTGTCAGTGACCTATTCCACTCGTTTTGTGTCTGTCGA
AATCAGCTGTCCTCCGTTTTGGCGGTAGTGCGCGATACGGCTGCGTGGGT
TCGACGAGTATGGTGTAGGAGTGCAAATATGGAAACTGCAACATTTGTTT
TTGGCGGTTTGCACCGATGCTCTGATGTGTCGCATCGGCTTTTTGTGGAA
GCCGGGTCTCCCTCCCGCTTGTAACAAAATACCACGCAAGAACCACAACT
TCAGGGAGGCGAGGCGTTTCTCGAGAGCATCCTCCTCAACTGCATCCGGG
CCCTGGCGGTCGGAACCTGATCTCATGCACCTTCGAAACGTCCTGCACCA
CCCTACTTGCACCGATGTAATGGATTGCTAATACGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7648:3685..9472-

>mRNA_L-elsbetiae_contig7648.16576.1 ID=mRNA_L-elsbetiae_contig7648.16576.1|Name=mRNA_L-elsbetiae_contig7648.16576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2094bp|location=Sequence derived from alignment at L-elsbetiae_contig7648:3685..9472- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGGCTTTGGTCCAACATTGGCCTTCCTCCTCCTGGTTTCGCCGTT
CAACGTGGTGGCCAACGTGGTGGCTGCCGCCGTTGCTGGGCATGGGCGGG
CATCTCCAACATTAGGGTCCACCAACGCTGGTGCAGAAAGAACGATAGCT
CATAGCAGGCGATCCTGCGGCCTTGATCACCACGAGGCTCAAGCATGCAA
CTCTGGATGGCCAACAACCCAAAAGATGATGGGCTTTGGTCCAACATTGG
CCTTCCTCCTCCTGGTTTCGCCGTTCAACGTGGTGGCCAACGTGGTGGCT
GCCGCCGTTGCTGGGCATGGGCGGGCATCTCCAACATTAGGGTCCACCAA
CGCTGGTGCAGAAAGAACGATAGCTCATAGCAGGCGATCCTGCGGCCTTG
ATCACCACGAGGCTCAAGCATGCAACTCTGGATGGCCAACAACCCAAAAG
CCCAAGACTGGCAGCTACGAGCGCTCGCCAAGCAATAGCATAAGCAGTAA
AGTGGACGCTTTGCAAACTTTGGCCTTGGATGTACGAGGAGGCGGTGGGG
GCAGCAGCGAGGAGGCATCGGTGATGACTCTCTTTATAAGAGTCCTTGTG
CCGGGGTTCGGAAGAGAGAAAAACAAGGATGGGGAGTTGGACTTGGAGGG
AGGCGGGCTTGTCCGAAGGTTGAAGCGCTTGGTGTCTGGGGTGTTGCGCA
CGATGCGGAGATCGCCAGCGAGCGCTGGAACCGAGGCCCAAGACTGGCAG
CTACGAGCGCTCGCCAAGCAATAGCATAAGCAGTAAAGTGGACGCTTTGC
AAACTTTGGCCTTGGATGTACGAGGAGGCGGTGGGGGCAGCAGCGAGGAG
GCATCGGTGATGACTCTCTTTATAAGAGTCCTTGTGCCGGGGTTCGGAAG
AGAGAAAAACAAGGATGGGGAGTTGGACTTGGAGGGAGGCGGGCTTGTCC
GAAGGTTGAAGCGCTTGGTGTCTGGGGTGTTGCGCACGATGCGGAGATCG
CCAGCGAGCGCTGGAACCGAGGGCGGGGAAGAAAATATAAAGGCCAAGAA
AAAGGGCAAGGGGAAAGGCAAGGGAGCAGCGACCGCGTCCCACCTGGAAA
AGACCTACCGACCAGGAAATGCCAACTATCGGATACAAAAGGCGGGGAAG
AAAATATAAAGGCCAAGAAAAAGGGCAAGGGGAAAGGCAAGGGAGCAGCG
ACCGCGTCCCACCTGGAAAAGACCTACCGACCAGGAAATGCCAACTATCG
GATACAAAAGGAATTAAAAGAGTTCATGGCCAACCCACCGGATTGCTGCA
AAGTTAGCGTCGGCAAGAACATCAGGAATTAAAAGAGTTCATGGCCAACC
CACCGGATTGCTGCAAAGTTAGCGTCGGCAAGAACATCAGAGTGTGGATT
ATCACCATCAGCGGAGCGGAAGGTACGATCTACGCCGGGGAAAAGTTCCG
CCTGAGGGTGGCCTTCCCCGACGACTACCCGACCAAGCCGCCAGCGGTGT
ACTTCCTGCAGTCTCCGCCGCCGCCAAAGCACCAGAGTGTGGATTATCAC
CATCAGCGGAGCGGAAGGTACGATCTACGCCGGGGAAAAGTTCCGCCTGA
GGGTGGCCTTCCCCGACGACTACCCGACCAAGCCGCCAGCGGTGTACTTC
CTGCAGTCTCCGCCGCCGCCAAAGCACCAGCACATTTACACCAATGGAGA
CATCTGCTTGAGCTTGTTGAGCCCTAGAGACTGGAAGCCGAGTCTAACCG
TGATCACATTTACACCAATGGAGACATCTGCTTGAGCTTGTTGAGCCCTA
GAGACTGGAAGCCGAGTCTAACCGTGATGTCTCTGGCGTTGAGCATCCTT
AGCATGCTGTCCAGCGCCAAGGAGAAGCGCAATCCAGAAGACAATGCATC
ACGTCTCTGGCGTTGAGCATCCTTAGCATGCTGTCCAGCGCCAAGGAGAA
GCGCAATCCAGAAGACAATGCATCACACGCCGAAGCAAGACCAGGGCAAG
CTCAACAATGGATATACCACGATGATATATGCTAGACGCCGAAGCAAGAC
CAGGGCAAGCTCAACAATGGATATACCACGATGATATATGCTAG
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