prot_L-elsbetiae_contig7642.16569.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7642.16569.1
Unique Nameprot_L-elsbetiae_contig7642.16569.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length194
Homology
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BLAST of mRNA_L-elsbetiae_contig7642.16569.1 vs. uniprot
Match: D7G0M4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M4_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 8.440e-33
Identity = 79/128 (61.72%), Postives = 87/128 (67.97%), Query Frame = 0 
Query:   56 GGGVQVRKQKRARGADNPHSRSFVKEVKAMEGNGEWRGVLRQLGVAERRAADTLAATLAAAGTPEIAPRPEPMTVYMYTACITAMSKCKRWREALAVLDRMLAXXXXXXXXXXXXHEELTPNLNTMSA 183
            GGG QVR   R RG DNPHSR FVK+VKAME +G+W+ VLR+L  AE RAA T  A         +APR EPMTVYMYTACIT MSKCKRWREAL VLDRM+A              ELTPN+NTMSA
Sbjct:   30 GGGAQVR---RRRGTDNPHSRLFVKKVKAMESSGDWKAVLRELDAAEGRAAAT--AXXXXXXXAAVAPRAEPMTVYMYTACITTMSKCKRWREALEVLDRMMAAAQEEGGGG-----ELTPNVNTMSA 147
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BLAST of mRNA_L-elsbetiae_contig7642.16569.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.560e-5
Identity = 30/90 (33.33%), Postives = 41/90 (45.56%), Query Frame = 0 
Query:  127 PMTVYMYTACITAMSKCKRWREALAVLDRM-----------------------LAXXXXXXXXXXXXHEELTPNLNTMSAVITACGRCGK 193
            P  +YMY ACITA+++C RWR+ALA+LD M                        A               + P++ + SA ITACG CG+
Sbjct:  271 PFNIYMYNACITALARCGRWRQALAILDHMRFSANAAEAAAAATVDTALKADPAAGVDGGAAMSPPAPAAVRPDVFSYSAAITACGNCGE 360
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BLAST of mRNA_L-elsbetiae_contig7642.16569.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 6.130e-5
Identity = 30/93 (32.26%), Postives = 41/93 (44.09%), Query Frame = 0 
Query:  127 PMTVYMYTACITAMSKCKRWREALAVLDRM--------------------------LAXXXXXXXXXXXXHEELTPNLNTMSAVITACGRCGK 193
            P  +YMY ACITA+++C RWR+ALA+LD M                           A               + P++ + SA ITACG CG+
Sbjct:   11 PFNIYMYNACITALARCGRWRQALAILDHMRFTANAAEAXXXXXXXXXXXALKADPAAGIDGGAAMSPPAPAAVRPDVFSYSAAITACGNCGE 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7642.16569.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0M4_ECTSI8.440e-3361.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KUL4_9PHAE2.560e-533.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMP8_ECTSI6.130e-532.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 131..158
e-value: 1.7E-4
score: 19.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 71..194
e-value: 1.1E-10
score: 43.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7642contigL-elsbetiae_contig7642:5993..6974 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7642.16569.1mRNA_L-elsbetiae_contig7642.16569.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7642 5993..6974 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7642.16569.1 ID=prot_L-elsbetiae_contig7642.16569.1|Name=mRNA_L-elsbetiae_contig7642.16569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MAFISLPTVRALGDAQRIPWRNSDRPQSVSRTHFHSVAVQAKHRRRRQGW
SCSMSGGGVQVRKQKRARGADNPHSRSFVKEVKAMEGNGEWRGVLRQLGV
AERRAADTLAATLAAAGTPEIAPRPEPMTVYMYTACITAMSKCKRWREAL
AVLDRMLAAAAAAAAAAGGGHEELTPNLNTMSAVITACGRCGKG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf