mRNA_L-elsbetiae_contig7642.16569.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7642.16569.1
Unique NamemRNA_L-elsbetiae_contig7642.16569.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7642.16569.1 vs. uniprot
Match: D7G0M4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M4_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 8.440e-33
Identity = 79/128 (61.72%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:  166 GGGVQVRKQKRARGADNPHSRSFVKEVKAMEGNGEWRGVLRQLGVAERRAADTLAATLAAAGTPEIAPRPEPMTVYMYTACITAMSKCKRWREALAVLDRMLAXXXXXXXXXXXXHEELTPNLNTMSA 549
            GGG QVR   R RG DNPHSR FVK+VKAME +G+W+ VLR+L  AE RAA T  A         +APR EPMTVYMYTACIT MSKCKRWREAL VLDRM+A              ELTPN+NTMSA
Sbjct:   30 GGGAQVR---RRRGTDNPHSRLFVKKVKAMESSGDWKAVLRELDAAEGRAAAT--AXXXXXXXAAVAPRAEPMTVYMYTACITTMSKCKRWREALEVLDRMMAAAQEEGGGG-----ELTPNVNTMSA 147
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BLAST of mRNA_L-elsbetiae_contig7642.16569.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.560e-5
Identity = 30/90 (33.33%), Postives = 41/90 (45.56%), Query Frame = 1 
Query:  379 PMTVYMYTACITAMSKCKRWREALAVLDRM-----------------------LAXXXXXXXXXXXXHEELTPNLNTMSAVITACGRCGK 579
            P  +YMY ACITA+++C RWR+ALA+LD M                        A               + P++ + SA ITACG CG+
Sbjct:  271 PFNIYMYNACITALARCGRWRQALAILDHMRFSANAAEAAAAATVDTALKADPAAGVDGGAAMSPPAPAAVRPDVFSYSAAITACGNCGE 360
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BLAST of mRNA_L-elsbetiae_contig7642.16569.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 6.130e-5
Identity = 30/93 (32.26%), Postives = 41/93 (44.09%), Query Frame = 1 
Query:  379 PMTVYMYTACITAMSKCKRWREALAVLDRM--------------------------LAXXXXXXXXXXXXHEELTPNLNTMSAVITACGRCGK 579
            P  +YMY ACITA+++C RWR+ALA+LD M                           A               + P++ + SA ITACG CG+
Sbjct:   11 PFNIYMYNACITALARCGRWRQALAILDHMRFTANAAEAXXXXXXXXXXXALKADPAAGIDGGAAMSPPAPAAVRPDVFSYSAAITACGNCGE 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7642.16569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0M4_ECTSI8.440e-3361.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KUL4_9PHAE2.560e-533.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMP8_ECTSI6.130e-532.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7642contigL-elsbetiae_contig7642:5993..6974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue3.9e-30
Seed eggNOG ortholog2880.D7G0M4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-07_001550.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size584
Cds size582
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816849.0668242-CDS-L-elsbetiae_contig7642:5992..63311622816849.0668242-CDS-L-elsbetiae_contig7642:5992..6331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7642 5993..6331 -
1691683859.6082919-CDS-L-elsbetiae_contig7642:5992..63311691683859.6082919-CDS-L-elsbetiae_contig7642:5992..6331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7642 5993..6331 -
1622816849.0816891-CDS-L-elsbetiae_contig7642:6731..69741622816849.0816891-CDS-L-elsbetiae_contig7642:6731..6974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7642 6732..6974 -
1691683859.6210518-CDS-L-elsbetiae_contig7642:6731..69741691683859.6210518-CDS-L-elsbetiae_contig7642:6731..6974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7642 6732..6974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7642.16569.1prot_L-elsbetiae_contig7642.16569.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7642 5993..6974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7642.16569.1

>prot_L-elsbetiae_contig7642.16569.1 ID=prot_L-elsbetiae_contig7642.16569.1|Name=mRNA_L-elsbetiae_contig7642.16569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MAFISLPTVRALGDAQRIPWRNSDRPQSVSRTHFHSVAVQAKHRRRRQGW
SCSMSGGGVQVRKQKRARGADNPHSRSFVKEVKAMEGNGEWRGVLRQLGV
AERRAADTLAATLAAAGTPEIAPRPEPMTVYMYTACITAMSKCKRWREAL
AVLDRMLAAAAAAAAAAGGGHEELTPNLNTMSAVITACGRCGKG
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mRNA from alignment at L-elsbetiae_contig7642:5993..6974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7642.16569.1 ID=mRNA_L-elsbetiae_contig7642.16569.1|Name=mRNA_L-elsbetiae_contig7642.16569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=982bp|location=Sequence derived from alignment at L-elsbetiae_contig7642:5993..6974- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTTCATCTCGCTTCCGACTGTACGGGCTTTGGGAGACGCCCAGCG
AATACCATGGAGAAACAGCGATCGACCGCAGTCTGTCTCGAGAACCCACT
TCCATTCTGTGGCGGTCCAAGCCAAGCACCGCCGTCGGAGACAAGGCTGG
TCGTGCAGCATGTCCGGCGGTGGCGTGCAGGTCCGGAAGCAGAAGCGTGC
GAGAGGGGCAGACAACCCTCACTCTCGGTCGTTCGTGAAAGAGGTGCGCT
GCGAGTCGTAGTGCTGTTGTGTTTCAAAGTACATCTGCGAGGTACATACA
TGTGCGCGTAGCACGCACAGCCCGCGCTCTCCACCTTGTGCCTGCTTGTG
GATGCGTGGTCGCGCCGAACCAGCACTGCTGCGGCGAGGTTTTTGAGACG
CTGGTTTTCATGACCAATGTTGATTTTGGTCAAGCCGCGGCGCGCACCCA
CAAACATTCCCTTTCTCTTTTCCCCGGGACACAGATACATGGCAGAGTTC
TGGTTTTCAATGCCAACCGTTTCTTTCTTCATGGTCGATATGAAGACGAA
AGGCAAGCAACCAATCAAGCATGCCCCGCTACGCCTGACCCTCTGACCTC
TTCGATTGCCTACCCCCCCCCTTGGCCTAAACGGCGAAGCAAGGTCAAAG
CGATGGAGGGAAACGGAGAGTGGAGAGGCGTCCTCCGCCAGCTGGGCGTG
GCAGAGAGGCGAGCGGCCGATACGCTCGCCGCCACCCTCGCCGCCGCGGG
GACGCCCGAGATCGCCCCGCGCCCGGAGCCCATGACGGTCTACATGTACA
CCGCGTGCATCACGGCCATGTCCAAGTGCAAGAGGTGGAGGGAAGCCCTG
GCGGTGCTCGACAGAATGCTGGCGGCGGCGGCGGCTGCGGCGGCGGCGGC
GGGCGGGGGGCATGAGGAGCTCACCCCGAACCTGAACACGATGAGCGCGG
TTATCACGGCGTGCGGGAGGTGCGGCAAAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7642:5993..6974-

>mRNA_L-elsbetiae_contig7642.16569.1 ID=mRNA_L-elsbetiae_contig7642.16569.1|Name=mRNA_L-elsbetiae_contig7642.16569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig7642:5993..6974- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTTCATCTCGCTTCCGACTGTACGGGCTTTGGGAGACGCCCAGCG
AATACCATGGAGAAACAGCGATCGACCGCAGTCTGTCTCGAGAACCCACT
TCCATTCTGTGGCGGTCCAAGCCAAGCACCGCCGTCGGAGACAAGGCTGG
TCGTGCAGCATGTCCGGCGGTGGCGTGCAGGTCCGGAAGCAGAAGCGTGC
GAGAGGGGCAGACAACCCTCACTCTCGGTCGTTCGTGAAAGAGATGGCCT
TCATCTCGCTTCCGACTGTACGGGCTTTGGGAGACGCCCAGCGAATACCA
TGGAGAAACAGCGATCGACCGCAGTCTGTCTCGAGAACCCACTTCCATTC
TGTGGCGGTCCAAGCCAAGCACCGCCGTCGGAGACAAGGCTGGTCGTGCA
GCATGTCCGGCGGTGGCGTGCAGGTCCGGAAGCAGAAGCGTGCGAGAGGG
GCAGACAACCCTCACTCTCGGTCGTTCGTGAAAGAGGTCAAAGCGATGGA
GGGAAACGGAGAGTGGAGAGGCGTCCTCCGCCAGCTGGGCGTGGCAGAGA
GGCGAGCGGCCGATACGCTCGCCGCCACCCTCGCCGCCGCGGGGACGCCC
GAGATCGCCCCGCGCCCGGAGCCCATGACGGTCTACATGTACACCGCGTG
CATCACGGCCATGTCCAAGTGCAAGAGGTGGAGGGAAGCCCTGGCGGTGC
TCGACAGAATGCTGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGGCGGG
GGGCATGAGGAGCTCACCCCGAACCTGAACACGATGAGCGCGGTTATCAC
GGCGTGCGGGAGGTGCGGCAAAGGAGTCAAAGCGATGGAGGGAAACGGAG
AGTGGAGAGGCGTCCTCCGCCAGCTGGGCGTGGCAGAGAGGCGAGCGGCC
GATACGCTCGCCGCCACCCTCGCCGCCGCGGGGACGCCCGAGATCGCCCC
GCGCCCGGAGCCCATGACGGTCTACATGTACACCGCGTGCATCACGGCCA
TGTCCAAGTGCAAGAGGTGGAGGGAAGCCCTGGCGGTGCTCGACAGAATG
CTGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGGCGGGGGGCATGAGGA
GCTCACCCCGAACCTGAACACGATGAGCGCGGTTATCACGGCGTGCGGGA
GGTGCGGCAAAGGA
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