mRNA_L-elsbetiae_contig7634.16558.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7634.16558.1
Unique NamemRNA_L-elsbetiae_contig7634.16558.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7634.16558.1 vs. uniprot
Match: A0A6H5KRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA3_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.330e-51
Identity = 113/238 (47.48%), Postives = 138/238 (57.98%), Query Frame = 3 
Query:   51 MDGKKTLG-GVEVKPDAEKLVKVE------------TSNNGAKIAEAFAL----------GANSREVSDEQVYRDPAPLKWRIFEVVAKANGQRAFGTYWSALRDFMHGWLGRGELDDVLNSCLGADNVHLHNELILCLLHNARCRYLPAELVSQVPASSRGKVVHAAVK-------------------------PHSSRAALPXXXXXXXXAALSGTSAASSPFQGKRTEGLLSNAD 620
            MDG  +   G+ +  ++++LVKVE            ++++G  +AEA A           G     V+DE +Y+DP  LKW+IFE VAKANGQRAF TYWSALRDFMHGWL RG LD+ L++ LGADN+HLHNELILCLL+NARCRYLPA+LVSQVPAS RGKVVH                             P        XX         +  +AAS PFQGKR EGLL NA+
Sbjct:    1 MDGVNSPSPGIIIGKNSDRLVKVEQPTVPRSSNTGSSADHGVSMAEAVAAELAAAETGGTGGGQNAVTDEHLYQDPGSLKWKIFEAVAKANGQRAFETYWSALRDFMHGWLSRGGLDEALDASLGADNLHLHNELILCLLNNARCRYLPADLVSQVPASFRGKVVHTTAXXXXXXXXXXXXXXXXXXXXXXXXXXPVLXXXXXXXXPPCGNSGLSNAAAAASLPFQGKRAEGLLLNAE 238
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BLAST of mRNA_L-elsbetiae_contig7634.16558.1 vs. uniprot
Match: D8LER5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER5_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 2.050e-49
Identity = 103/196 (52.55%), Postives = 117/196 (59.69%), Query Frame = 3 
Query:  144 AEAFALGANSREVSDEQVYRDPAPLKWRIFEVVAKANGQRAFGTYWSALRDFMHGWLGRGELDDVLNSCLGADNVHLHNELILCLLHNARCRYLPAELVSQVPASSRGKVVHAAVKPHSSRA-------------ALPXXXXXXXXAALSGTSA------------------------ASSPFQGKRTEGLLSNAD 620
            AE    G     V+DE +Y+DPA LKW+IFE VAKANGQRAF TYWSALRDFMHGWL RG LD+ L++ LGADN+HLHNELILCLL+NARCRYLPA+LVSQVPAS RGKVVH                       A+P         + SG+S                         AS PFQGKR EGLL NA+
Sbjct:   12 AETGGTGGGQNAVTDEHLYQDPASLKWKIFEAVAKANGQRAFETYWSALRDFMHGWLPRGGLDEALDASLGADNLHLHNELILCLLNNARCRYLPADLVSQVPASFRGKVVHTTXXXXXXXXXXXXXXXXXXXXXAIPRRPVPVLNGSNSGSSPCGKSGLSNGSXXXXXXXXXXXXXXASLPFQGKRAEGLLLNAE 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7634.16558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRA3_9PHAE1.330e-5147.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LER5_ECTSI2.050e-4952.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7634contigL-elsbetiae_contig7634:2706..4937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTranscriptional coactivator Hfi1/Tada1 domain protein
Ec32 orthologEc-26_000860.1
Exons2
Model size712
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7634.16558.1prot_L-elsbetiae_contig7634.16558.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7634 2756..4937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.296964-UTR-L-elsbetiae_contig7634:2705..27551622816848.296964-UTR-L-elsbetiae_contig7634:2705..2755Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7634 2706..2755 +
1691683859.0533504-UTR-L-elsbetiae_contig7634:2705..27551691683859.0533504-UTR-L-elsbetiae_contig7634:2705..2755Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7634 2706..2755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.3103225-CDS-L-elsbetiae_contig7634:2755..29671622816848.3103225-CDS-L-elsbetiae_contig7634:2755..2967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7634 2756..2967 +
1691683859.067427-CDS-L-elsbetiae_contig7634:2755..29671691683859.067427-CDS-L-elsbetiae_contig7634:2755..2967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7634 2756..2967 +
1622816848.3236134-CDS-L-elsbetiae_contig7634:4489..49371622816848.3236134-CDS-L-elsbetiae_contig7634:4489..4937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7634 4490..4937 +
1691683859.0768654-CDS-L-elsbetiae_contig7634:4489..49371691683859.0768654-CDS-L-elsbetiae_contig7634:4489..4937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7634 4490..4937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7634.16558.1

>prot_L-elsbetiae_contig7634.16558.1 ID=prot_L-elsbetiae_contig7634.16558.1|Name=mRNA_L-elsbetiae_contig7634.16558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MDGKKTLGGVEVKPDAEKLVKVETSNNGAKIAEAFALGANSREVSDEQVY
RDPAPLKWRIFEVVAKANGQRAFGTYWSALRDFMHGWLGRGELDDVLNSC
LGADNVHLHNELILCLLHNARCRYLPAELVSQVPASSRGKVVHAAVKPHS
SRAALPPPPPSASKAALSGTSAASSPFQGKRTEGLLSNADRHPAAANGGG
RGFAAGSNGASHAGRGAATA
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mRNA from alignment at L-elsbetiae_contig7634:2706..4937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7634.16558.1 ID=mRNA_L-elsbetiae_contig7634.16558.1|Name=mRNA_L-elsbetiae_contig7634.16558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2232bp|location=Sequence derived from alignment at L-elsbetiae_contig7634:2706..4937+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGGGGTCGACCTGCTCGCCAGACCTCTGAACATCTCGGCAGACAGCC
ATGGACGGGAAAAAAACATTGGGAGGGGTGGAAGTGAAGCCAGATGCAGA
AAAGCTGGTGAAAGTAGAGACCAGCAACAACGGCGCCAAGATAGCCGAGG
CTTTCGCGCTGGGCGCAAACAGCCGCGAAGTCAGTGACGAGCAGGTGTAC
AGGGACCCAGCTCCCCTGAAGTGGAGAATTTTCGAGGTCGTAGCGAAGGC
GAACGGGCAGCGGTAAGTTGGTGTGGCACAACACGTAGATATAGCTCCCG
CATCGACACAAACACATCCAAGCTCGGTACCGCAAATTCAATTTCAACGA
CACACGTGAAGACTACATCCGTACGTCCGTTCTATCTGCCATGTATCGAG
CGACACTGCCGCGCCGCCTGCTTCCATGTTGGTGTCCTTGTTGCAAAAGC
GGTCACGCCTAAAACGTGATAGAGTGCATATCACAGAGGATGCGTCCACT
TTGCGTCTGTACATGCATAGTCTAGATATGTAAACTTACACACATTGCAC
GTTCTGTGTGTATGTACTCCGTAGGTACTACCGTTGTAGCTCGCACCCAC
ATCACCGCTCTGCTGCTGTGATGATATCGGAGCAGTAAAAAAACCGGACG
TCCGTAGCACACGTGTTACTACTACAGCCGTGATATTTAGCACGCGTGTT
ACTGCTGCTGGTGAGATGCGTTATTGCTCCATCGTTGACGCCCGTTGCAT
ACCCTGGACATGGCCATCCTGTAGCTGAGAGGGTCAAGACGGTGGGAGTT
GAAACAACTGCAGGGTACCGAACCCGGTCGCCCCGGTGGTCTAGTGGTTT
AACTTCGAACCCACTAGCAGCAAAGTCTGGAGTTCAATCTCAAGCTGAAG
TGTTTCTTTTGCGACTTTGCAGGTGAAAGCGATAAAAGCTGAACAGCTCG
TGAGTAGCTCGTGAGTACCCAACTTCGACGTAATCACGTTGACAAGGGAA
AGGGACAGCTGAACCCTTCTCGCGATAAATCTCAAGGCAAGAACCGCAGG
AGGAAGGTGGGGCAAAAAAAGAAAAAGCCCCAGTGTTCACCTCCTCCTGT
GTGGCCCGGTTGGTTCTAGTTGTACATACAGACCCACTGCAAAGTGTAGT
ACCTCTAAGTACACCGCAAGGTGTAGTACATGTCTCCACTTGGGGGGACT
GTCGCCAAAATAAATGGGAAGGACACACACACACACACCGAAGATGCAGC
AGTGTACCTGCCTGGTACTCATCACGCGAGATGCCGCTTTCTCGGAAAAC
TTTCTACAATACAACGTAATAGACGAATGCACAAGTTGTACCTACAACGT
AGTTCGTGGCATGTTTTTCGTCATTCCTTTTGCCGAGAAACTCGGCGCGT
CACCGGTGAACAACACAGCGGAGAGAACGATGCCGGCATGGGTTTTTACC
TTTTTACCCATTTTGCCGTGCACCCCGACCAGACCCCCAGCGAGAGGTCG
GCGACGGTAATCAGCAGCCCCAGCTAGTTTCTGCCACGCAATGATTAGTC
TGGTCTGCACCAGAGGCAGGAACAGATGGGTGGGGGGGGGTGGGGGGGCG
AACTGCAGCCGCCAAATGGCGACCGTCATGGCGGCCCACCTCACGACACA
CTCACTCACATCACTAAATAGCAACAACAGCCGCTCCAGCATGACACACC
GGCTCATTTCTCTCCTCCCGACCCCCCCGCCCACGCGTGACGCGCCCGCC
GCCGCCGCTCGAAATCGATACCCCCGCGCCGCAGAGCCTTTGGGACCTAC
TGGTCTGCCCTGCGAGACTTCATGCACGGGTGGCTCGGTCGCGGCGAGCT
GGACGACGTGCTCAACTCCTGCCTGGGCGCAGACAACGTGCACCTGCACA
ACGAGCTGATCCTGTGCCTCCTCCACAACGCGCGATGCCGCTACCTCCCG
GCCGAGCTCGTGTCTCAGGTGCCGGCGAGCTCCCGCGGGAAGGTGGTGCA
CGCCGCCGTCAAGCCGCATAGCTCTCGGGCGGCGTTGCCGCCGCCGCCGC
CGAGCGCCAGCAAGGCGGCCCTGTCGGGCACCAGCGCCGCCTCCTCGCCT
TTCCAAGGGAAGAGGACGGAGGGACTCCTGTCGAACGCGGACAGGCACCC
GGCGGCGGCGAATGGCGGGGGCAGGGGCTTCGCCGCCGGCAGCAACGGTG
CCTCCCACGCCGGCCGCGGAGCCGCCACCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7634:2706..4937+

>mRNA_L-elsbetiae_contig7634.16558.1 ID=mRNA_L-elsbetiae_contig7634.16558.1|Name=mRNA_L-elsbetiae_contig7634.16558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig7634:2706..4937+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGGAAAAAAACATTGGGAGGGGTGGAAGTGAAGCCAGATGCAGA
AAAGCTGGTGAAAGTAGAGACCAGCAACAACGGCGCCAAGATAGCCGAGG
CTTTCGCGCTGGGCGCAAACAGCCGCGAAGTCAGTGACGAGCAGGTGTAC
AGGGACCCAGCTCCCCTGAAGTGGAGAATTTTCGAGGTCGTAGCGAAGGC
GAACGGGCAGCGATGGACGGGAAAAAAACATTGGGAGGGGTGGAAGTGAA
GCCAGATGCAGAAAAGCTGGTGAAAGTAGAGACCAGCAACAACGGCGCCA
AGATAGCCGAGGCTTTCGCGCTGGGCGCAAACAGCCGCGAAGTCAGTGAC
GAGCAGGTGTACAGGGACCCAGCTCCCCTGAAGTGGAGAATTTTCGAGGT
CGTAGCGAAGGCGAACGGGCAGCGAGCCTTTGGGACCTACTGGTCTGCCC
TGCGAGACTTCATGCACGGGTGGCTCGGTCGCGGCGAGCTGGACGACGTG
CTCAACTCCTGCCTGGGCGCAGACAACGTGCACCTGCACAACGAGCTGAT
CCTGTGCCTCCTCCACAACGCGCGATGCCGCTACCTCCCGGCCGAGCTCG
TGTCTCAGGTGCCGGCGAGCTCCCGCGGGAAGGTGGTGCACGCCGCCGTC
AAGCCGCATAGCTCTCGGGCGGCGTTGCCGCCGCCGCCGCCGAGCGCCAG
CAAGGCGGCCCTGTCGGGCACCAGCGCCGCCTCCTCGCCTTTCCAAGGGA
AGAGGACGGAGGGACTCCTGTCGAACGCGGACAGGCACCCGGCGGCGGCG
AATGGCGGGGGCAGGGGCTTCGCCGCCGGCAGCAACGGTGCCTCCCACGC
CGGCCGCGGAGCCGCCACCGCCAGCCTTTGGGACCTACTGGTCTGCCCTG
CGAGACTTCATGCACGGGTGGCTCGGTCGCGGCGAGCTGGACGACGTGCT
CAACTCCTGCCTGGGCGCAGACAACGTGCACCTGCACAACGAGCTGATCC
TGTGCCTCCTCCACAACGCGCGATGCCGCTACCTCCCGGCCGAGCTCGTG
TCTCAGGTGCCGGCGAGCTCCCGCGGGAAGGTGGTGCACGCCGCCGTCAA
GCCGCATAGCTCTCGGGCGGCGTTGCCGCCGCCGCCGCCGAGCGCCAGCA
AGGCGGCCCTGTCGGGCACCAGCGCCGCCTCCTCGCCTTTCCAAGGGAAG
AGGACGGAGGGACTCCTGTCGAACGCGGACAGGCACCCGGCGGCGGCGAA
TGGCGGGGGCAGGGGCTTCGCCGCCGGCAGCAACGGTGCCTCCCACGCCG
GCCGCGGAGCCGCCACCGCC
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