mRNA_L-elsbetiae_contig763.16553.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig763.16553.1
Unique NamemRNA_L-elsbetiae_contig763.16553.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig763.16553.1 vs. uniprot
Match: D8LQG0_ECTSI (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG0_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.340e-29
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 ILKSSRDHFKTNTGVGIATGNICTGIIGKLKFRSEYALAGDVVNLAARLAAASEKQGNGALCDETTLESLTGGV 222
            I+ SS + FK  TGVGIATG++CTGIIGK  FRSEYALAGDVVNLAARLAAASEK  NG LCDE TL+SLTG V
Sbjct:    2 IVMSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEATLQSLTGEV 75
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BLAST of mRNA_L-elsbetiae_contig763.16553.1 vs. uniprot
Match: A0A835YYC7_9STRA (Guanylate cyclase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.160e-14
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 ILKSSRDHFKTNTGVGIATGNICTGIIGKLKF-RSEYALAGDVVNLAARLAAASEKQGNGA-LCDETTLE 204
            I ++++  F+   GVGIA+G IC G+IGK  F R EYALAGD+VNLAARLAA ++ +  G  LCD+ T+E
Sbjct:   33 IKETAKRDFRHRVGVGIASGQICCGLIGKADFSRCEYALAGDMVNLAARLAARADTEREGCVLCDQYTIE 102
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BLAST of mRNA_L-elsbetiae_contig763.16553.1 vs. uniprot
Match: A0A061RBI5_9CHLO (Guanylyl cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RBI5_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 4.250e-6
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    1 ILKSSRDHFKTNTGVGIATGNICTGIIGKLKFRSEYALAGDVVNLAARLAAASEKQGNGALCDETTLESL 210
            +L+  RD   T    G+A+GN   G++G  + R EYA+ GD VN AARLA A+ K G   +C E+   +L
Sbjct:  469 VLQGQRDVRFT---AGLASGNCYCGLVGSPEIRCEYAVMGDTVNTAARLAGAAHKMGRPIICAESLRAAL 535
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BLAST of mRNA_L-elsbetiae_contig763.16553.1 vs. uniprot
Match: A0A061RLZ7_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLZ7_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 1.500e-5
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:   16 RDHFKTNTGVGIATGNICTGIIGKLKFRSEYALAGDVVNLAARLAAASEKQGNGALCDETTLESL 210
            + H       G+ATG+   G++G  + R EYA+ GD VN AARLAA + K     LC ++  E++
Sbjct:  178 KXHADVTLSAGLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAV 242
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BLAST of mRNA_L-elsbetiae_contig763.16553.1 vs. uniprot
Match: A0A061RZX5_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZX5_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 1.530e-5
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:   16 RDHFKTNTGVGIATGNICTGIIGKLKFRSEYALAGDVVNLAARLAAASEKQGNGALCDETTLESL 210
            + H       G+ATG+   G++G  + R EYA+ GD VN AARLAA + K     LC ++  E++
Sbjct:  535 KGHADVTLSAGLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAV 599
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BLAST of mRNA_L-elsbetiae_contig763.16553.1 vs. uniprot
Match: A0A7S1SUT1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SUT1_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 2.070e-5
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   46 GIATGNICTGIIGKLKFRSEYALAGDVVNLAARLAAASEKQGNGALCDE 192
            GI TG+   G++G  K R EYA+ GD+VN AARLA  + K+G   LC E
Sbjct:   79 GITTGHCFCGLVGDPKIRCEYAVMGDIVNTAARLAGGAAKRGESILCAE 127
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig763.16553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQG0_ECTSI1.340e-2977.03Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A835YYC7_9STRA9.160e-1454.29Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A061RBI5_9CHLO4.250e-641.43Guanylyl cyclase n=1 Tax=Tetraselmis sp. GSL018 Ta... [more]
A0A061RLZ7_9CHLO1.500e-538.46Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A061RZX5_9CHLO1.530e-538.46Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A7S1SUT1_9CHLO2.070e-551.02Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig763contigL-elsbetiae_contig763:6803..7283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdenylyl cyclase class-3/4/guanylyl cyclase
Ec32 orthologEc-10_005510.1
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.5190208-CDS-L-elsbetiae_contig763:6802..69001622816847.5190208-CDS-L-elsbetiae_contig763:6802..6900Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig763 6803..6900 +
1691683858.4741614-CDS-L-elsbetiae_contig763:6802..69001691683858.4741614-CDS-L-elsbetiae_contig763:6802..6900Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig763 6803..6900 +
1622816847.5318737-CDS-L-elsbetiae_contig763:7159..72831622816847.5318737-CDS-L-elsbetiae_contig763:7159..7283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig763 7160..7283 +
1691683858.4846597-CDS-L-elsbetiae_contig763:7159..72831691683858.4846597-CDS-L-elsbetiae_contig763:7159..7283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig763 7160..7283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig763.16553.1prot_L-elsbetiae_contig763.16553.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig763 6803..7283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig763.16553.1

>prot_L-elsbetiae_contig763.16553.1 ID=prot_L-elsbetiae_contig763.16553.1|Name=mRNA_L-elsbetiae_contig763.16553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
ILKSSRDHFKTNTGVGIATGNICTGIIGKLKFRSEYALAGDVVNLAARLA
AASEKQGNGALCDETTLESLTGGV
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mRNA from alignment at L-elsbetiae_contig763:6803..7283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig763.16553.1 ID=mRNA_L-elsbetiae_contig763.16553.1|Name=mRNA_L-elsbetiae_contig763.16553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=481bp|location=Sequence derived from alignment at L-elsbetiae_contig763:6803..7283+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCTCAAGTCCTCGCGGGACCACTTCAAGACAAACACGGGCGTCGGGAT
CGCGACGGGCAACATATGCACGGGCATCATTGGGAAGCTGAAATTCAGGT
TTGGTGTATTTAGAGCTCGAAAACATGCGTCACACTCGTCGTCGAATCGT
TCGCGGAAGAAACGTATGTATTTTTAGCCTCGCAGCACAGGTGGAGGGTC
CCACGTCGACTAAAACCTAAGCAGATAAAGTGCGTGAACGGTAGGCGAAG
ACGACGTGTCTTCCGGTGCAAGAAAGAGAGTGAGCAACACGTACACCCTT
TTTCGGGCGGCAAAAAGTCACCGATTGCCTCCGCTGAAAATGAAACCGAA
AAAACAGGTCGGAGTATGCCCTAGCTGGAGATGTTGTCAACTTGGCGGCG
AGGCTTGCGGCGGCGTCGGAAAAGCAAGGAAACGGTGCCCTGTGCGACGA
AACGACGCTGGAGTCTCTGACTGGAGGGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig763:6803..7283+

>mRNA_L-elsbetiae_contig763.16553.1 ID=mRNA_L-elsbetiae_contig763.16553.1|Name=mRNA_L-elsbetiae_contig763.16553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig763:6803..7283+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCTCAAGTCCTCGCGGGACCACTTCAAGACAAACACGGGCGTCGGGAT
CGCGACGGGCAACATATGCACGGGCATCATTGGGAAGCTGAAATTCAGAT
TCTCAAGTCCTCGCGGGACCACTTCAAGACAAACACGGGCGTCGGGATCG
CGACGGGCAACATATGCACGGGCATCATTGGGAAGCTGAAATTCAGGTCG
GAGTATGCCCTAGCTGGAGATGTTGTCAACTTGGCGGCGAGGCTTGCGGC
GGCGTCGGAAAAGCAAGGAAACGGTGCCCTGTGCGACGAAACGACGCTGG
AGTCTCTGACTGGAGGGGTGGTCGGAGTATGCCCTAGCTGGAGATGTTGT
CAACTTGGCGGCGAGGCTTGCGGCGGCGTCGGAAAAGCAAGGAAACGGTG
CCCTGTGCGACGAAACGACGCTGGAGTCTCTGACTGGAGGGGTG
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