mRNA_L-elsbetiae_contig7627.16552.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7627.16552.1
Unique NamemRNA_L-elsbetiae_contig7627.16552.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7627.16552.1 vs. uniprot
Match: D8LKY4_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY4_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 7.120e-45
Identity = 79/109 (72.48%), Postives = 87/109 (79.82%), Query Frame = 2 
Query:    2 FYPHPAPREVGFAVTSMVEAARRPHWKALMWLFGAETVFFPCFFLPPPPSSGQAPAPVPDPTA-APTSVAYPLEATTFVMWGLTFGVISQLAVASGGPAFAYQASPYFR 325
            FYP PAPREVGFAVTSMV+AAR+PHWK LMWLFGA TVFFPCFFLPPP  SG+  + V D T   PT VAYPL+A TFVMWGLTFGV+S L VA GG  FA++  PYFR
Sbjct:  174 FYPDPAPREVGFAVTSMVKAARKPHWKGLMWLFGANTVFFPCFFLPPPSVSGRKQSLVDDSTIDVPTPVAYPLDAKTFVMWGLTFGVVSDLVVAGGGRGFAHRQPPYFR 282
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BLAST of mRNA_L-elsbetiae_contig7627.16552.1 vs. uniprot
Match: A0A835YXA0_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXA0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.100e-5
Identity = 35/95 (36.84%), Postives = 47/95 (49.47%), Query Frame = 2 
Query:    5 YPHPAPREVGFAVTSMVEAARRPHWKALMWLFGAETVFFPCFFLPPPPSSGQAPAPVPDPTAAPTSVAYPLEATTFVMWGLTFGVISQLAVASGG 289
            +P P   +  F V++    ARR  W+AL      +TV+ PCF LPPPP +       P P AA    A    A    MWG TF +++ L  A+GG
Sbjct:  228 WPVPRVEQAPFPVSAFPRHARRCAWRALRAALRIDTVWLPCFRLPPPPDA-------PKPAAADRDAA----ARALSMWGFTFWLVNDLLSAAGG 311
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7627.16552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKY4_ECTSI7.120e-4572.48Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A835YXA0_9STRA1.100e-536.84Nudix hydrolase domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7627contigL-elsbetiae_contig7627:6492..7342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size469
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.422764-CDS-L-elsbetiae_contig7627:6491..68771622816847.422764-CDS-L-elsbetiae_contig7627:6491..6877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7627 6492..6877 -
1691683858.4341123-CDS-L-elsbetiae_contig7627:6491..68771691683858.4341123-CDS-L-elsbetiae_contig7627:6491..6877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7627 6492..6877 -
1622816847.4343262-CDS-L-elsbetiae_contig7627:7260..73421622816847.4343262-CDS-L-elsbetiae_contig7627:7260..7342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7627 7261..7342 -
1691683858.4438415-CDS-L-elsbetiae_contig7627:7260..73421691683858.4438415-CDS-L-elsbetiae_contig7627:7260..7342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7627 7261..7342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7627.16552.1prot_L-elsbetiae_contig7627.16552.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7627 6492..7342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7627.16552.1

>prot_L-elsbetiae_contig7627.16552.1 ID=prot_L-elsbetiae_contig7627.16552.1|Name=mRNA_L-elsbetiae_contig7627.16552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
LLPTPRPSRGWLCCHQYGRGRAEAPLEGADVAVRGGNRLLPLLFSASTSV
VGTSPGPGPRPHGGSDLCRVPAGGHDVRHVGAHVRRDFSTSGGEWRACFC
LSSLPVLSVCASYIKRVRVRAPCVERWVLLVINTTAVVSHASQESVQRGT
LFFAKG
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mRNA from alignment at L-elsbetiae_contig7627:6492..7342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7627.16552.1 ID=mRNA_L-elsbetiae_contig7627.16552.1|Name=mRNA_L-elsbetiae_contig7627.16552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=851bp|location=Sequence derived from alignment at L-elsbetiae_contig7627:6492..7342- (Laminarionema elsbetiae ELsaHSoW15)
CTTCTACCCACACCCCGCCCCTCGAGAGGTTGGCTTTGCTGTCACCAGTA
TGGTAGAGGCCGCGCGGAGGCCCCACTGGAAGGTAGGGCCGGCATGTTAA
CTCACGCTCACATGTGATGTTGTGGCATAAATACACTCATTATTTCTCTA
TGTGTGCACCGCGTGCATCATAAGCAAACCAGATCCTGCAAGGATGGGTG
GTTTAGTTCCAATGCGCTAAAACATGTACCACCGCCATTCCAAGAGGAAC
AACACAGGAGCAGTTTTGTGGTGTTACCACGGCTGGTTGCAACGTGCTCC
AATAAACAACACCAAAGAGAGCAGCGGCAGCGGCGGCGTAGCCGTTTCAC
GCCTGCACGCGCCTTGACGCCCGCCCTCTCAACCACGTGATTTTTATGTT
ATTTTTGCAAACGTACGTATATGCATACATGCGTCCTTTCGATGTGTGTC
TTCTGCCCCCCACAGGCGCTGATGTGGCTGTTCGGGGCGGAAACCGTCTT
CTTCCCCTGCTTTTTTCTGCCTCCACCTCCGTCGTCGGGACAAGCCCCGG
CCCCGGTCCCCGACCCCACGGCGGCTCCGACCTCTGTCGCGTACCCGCTG
GAGGCCACGACGTTCGTCATGTGGGGGCTCACGTTCGGCGTGATTTCTCA
ACTAGCGGTGGCGAGTGGCGGGCCTGCTTTTGCCTATCAAGCCTCCCCGT
ACTTTCGGTGTGTGCGTCCTACATAAAACGCGTGCGCGTGCGTGCCCCAT
GTGTTGAACGCTGGGTGCTCCTGGTGATCAATACTACTGCTGTGGTGTCT
CACGCAAGCCAAGAGTCAGTCCAAAGAGGCACGTTGTTCTTTGCCAAAGG
T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7627:6492..7342-

>mRNA_L-elsbetiae_contig7627.16552.1 ID=mRNA_L-elsbetiae_contig7627.16552.1|Name=mRNA_L-elsbetiae_contig7627.16552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig7627:6492..7342- (Laminarionema elsbetiae ELsaHSoW15)
CTTCTACCCACACCCCGCCCCTCGAGAGGTTGGCTTTGCTGTCACCAGTA
TGGTAGAGGCCGCGCGGAGGCCCCACTGGAAGCTTCTACCCACACCCCGC
CCCTCGAGAGGTTGGCTTTGCTGTCACCAGTATGGTAGAGGCCGCGCGGA
GGCCCCACTGGAAGGCGCTGATGTGGCTGTTCGGGGCGGAAACCGTCTTC
TTCCCCTGCTTTTTTCTGCCTCCACCTCCGTCGTCGGGACAAGCCCCGGC
CCCGGTCCCCGACCCCACGGCGGCTCCGACCTCTGTCGCGTACCCGCTGG
AGGCCACGACGTTCGTCATGTGGGGGCTCACGTTCGGCGTGATTTCTCAA
CTAGCGGTGGCGAGTGGCGGGCCTGCTTTTGCCTATCAAGCCTCCCCGTA
CTTTCGGTGTGTGCGTCCTACATAAAACGCGTGCGCGTGCGTGCCCCATG
TGTTGAACGCTGGGTGCTCCTGGTGATCAATACTACTGCTGTGGTGTCTC
ACGCAAGCCAAGAGTCAGTCCAAAGAGGCACGTTGTTCTTTGCCAAAGGT
GCGCTGATGTGGCTGTTCGGGGCGGAAACCGTCTTCTTCCCCTGCTTTTT
TCTGCCTCCACCTCCGTCGTCGGGACAAGCCCCGGCCCCGGTCCCCGACC
CCACGGCGGCTCCGACCTCTGTCGCGTACCCGCTGGAGGCCACGACGTTC
GTCATGTGGGGGCTCACGTTCGGCGTGATTTCTCAACTAGCGGTGGCGAG
TGGCGGGCCTGCTTTTGCCTATCAAGCCTCCCCGTACTTTCGGTGTGTGC
GTCCTACATAAAACGCGTGCGCGTGCGTGCCCCATGTGTTGAACGCTGGG
TGCTCCTGGTGATCAATACTACTGCTGTGGTGTCTCACGCAAGCCAAGAG
TCAGTCCAAAGAGGCACGTTGTTCTTTGCCAAAGGT
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