mRNA_L-elsbetiae_contig7626.16549.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7626.16549.1
Unique NamemRNA_L-elsbetiae_contig7626.16549.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7626.16549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7626contigL-elsbetiae_contig7626:300..961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size662
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.2563608-UTR-L-elsbetiae_contig7626:299..5741622816847.2563608-UTR-L-elsbetiae_contig7626:299..574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7626 300..574 +
1691683858.3154266-UTR-L-elsbetiae_contig7626:299..5741691683858.3154266-UTR-L-elsbetiae_contig7626:299..574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7626 300..574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.2679343-CDS-L-elsbetiae_contig7626:574..9611622816847.2679343-CDS-L-elsbetiae_contig7626:574..961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7626 575..961 +
1691683858.3270364-CDS-L-elsbetiae_contig7626:574..9611691683858.3270364-CDS-L-elsbetiae_contig7626:574..961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7626 575..961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7626.16549.1prot_L-elsbetiae_contig7626.16549.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7626 575..961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7626.16549.1

>prot_L-elsbetiae_contig7626.16549.1 ID=prot_L-elsbetiae_contig7626.16549.1|Name=mRNA_L-elsbetiae_contig7626.16549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MCPRPHRLYSSTCIVYPCITTYLSVHVGRRRERSGCQSQRGSGPAIRHIC
MYARQRRLPVADKTDPAKAKPPRVTHINYVVEHSSTCLGPSIRQIITIDT
CILHSACRFLHFYFFVTDTYYAFAKRSDE
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mRNA from alignment at L-elsbetiae_contig7626:300..961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7626.16549.1 ID=mRNA_L-elsbetiae_contig7626.16549.1|Name=mRNA_L-elsbetiae_contig7626.16549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=662bp|location=Sequence derived from alignment at L-elsbetiae_contig7626:300..961+ (Laminarionema elsbetiae ELsaHSoW15)
CCCTGACAAATAAGTCACTCCTCCGGTGGGTGCAAGCTGATACAACAACG
ATGGGAGGGGGAAAATTAGTCAAGGATTGGTTCAGTCAGGACAGTGCCGC
ACAACTTAGTAGTCTACATAAAACGGCAGGCAGGTGATCCGTTTCAACGC
TCAAAAATACTCGGTCTATTTTTTTGAAAGGATCCTAAGTACATACATAC
CATCTGTGTGCAGCAGCAGTCCCCCAAAACGAAAAGACAACAGGCAGGAG
AACCGACATACCGATAGGCTACAACATGTGTCCACGGCCCCATAGACTCT
ACTCTAGCACGTGCATCGTCTATCCATGTATCACCACTTACCTATCTGTG
CATGTTGGTCGACGCCGGGAGCGGAGTGGATGTCAATCTCAACGGGGGAG
CGGACCAGCGATTAGACACATATGTATGTACGCACGACAGCGTAGACTAC
CTGTGGCGGACAAAACAGACCCGGCAAAAGCGAAGCCGCCCAGAGTCACG
CACATAAATTATGTTGTCGAACACTCGTCGACCTGTCTCGGACCTTCCAT
CCGACAAATCATTACCATAGATACATGCATACTTCATTCAGCGTGCCGTT
TTCTTCATTTTTATTTTTTTGTTACAGATACCTACTACGCATTTGCCAAA
CGTTCGGACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7626:300..961+

>mRNA_L-elsbetiae_contig7626.16549.1 ID=mRNA_L-elsbetiae_contig7626.16549.1|Name=mRNA_L-elsbetiae_contig7626.16549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig7626:300..961+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTCCACGGCCCCATAGACTCTACTCTAGCACGTGCATCGTCTATCC
ATGTATCACCACTTACCTATCTGTGCATGTTGGTCGACGCCGGGAGCGGA
GTGGATGTCAATCTCAACGGGGGAGCGGACCAGCGATTAGACACATATGT
ATGTACGCACGACAGCGTAGACTACCTGTGGCGGACAAAACAGACCCGGC
AAAAGCGAAGCCGCCCAGAGTCACGCACATAAATTATGTTGTCGAACACT
CGTCGACCTGTCTCGGACCTTCCATCCGACAAATCATTACCATAGATACA
TGCATACTTCATTCAGCGTGCCGTTTTCTTCATTTTTATTTTTTTGTTAC
AGATACCTACTACGCATTTGCCAAACGTTCGGACGAGATGTGTCCACGGC
CCCATAGACTCTACTCTAGCACGTGCATCGTCTATCCATGTATCACCACT
TACCTATCTGTGCATGTTGGTCGACGCCGGGAGCGGAGTGGATGTCAATC
TCAACGGGGGAGCGGACCAGCGATTAGACACATATGTATGTACGCACGAC
AGCGTAGACTACCTGTGGCGGACAAAACAGACCCGGCAAAAGCGAAGCCG
CCCAGAGTCACGCACATAAATTATGTTGTCGAACACTCGTCGACCTGTCT
CGGACCTTCCATCCGACAAATCATTACCATAGATACATGCATACTTCATT
CAGCGTGCCGTTTTCTTCATTTTTATTTTTTTGTTACAGATACCTACTAC
GCATTTGCCAAACGTTCGGACGAG
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