mRNA_L-elsbetiae_contig7622.16546.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7622.16546.1
Unique NamemRNA_L-elsbetiae_contig7622.16546.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7622.16546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7622contigL-elsbetiae_contig7622:454..1497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1044
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7622.16546.1prot_L-elsbetiae_contig7622.16546.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7622 474..1298 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.0451775-UTR-L-elsbetiae_contig7622:453..4731622816847.0451775-UTR-L-elsbetiae_contig7622:453..473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7622 454..473 +
1691683858.1795025-UTR-L-elsbetiae_contig7622:453..4731691683858.1795025-UTR-L-elsbetiae_contig7622:453..473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7622 454..473 +
1622816847.0670683-UTR-L-elsbetiae_contig7622:1298..14971622816847.0670683-UTR-L-elsbetiae_contig7622:1298..1497Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7622 1299..1497 +
1691683858.199389-UTR-L-elsbetiae_contig7622:1298..14971691683858.199389-UTR-L-elsbetiae_contig7622:1298..1497Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7622 1299..1497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.0555744-CDS-L-elsbetiae_contig7622:473..12981622816847.0555744-CDS-L-elsbetiae_contig7622:473..1298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7622 474..1298 +
1691683858.1901667-CDS-L-elsbetiae_contig7622:473..12981691683858.1901667-CDS-L-elsbetiae_contig7622:473..1298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7622 474..1298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7622.16546.1

>prot_L-elsbetiae_contig7622.16546.1 ID=prot_L-elsbetiae_contig7622.16546.1|Name=mRNA_L-elsbetiae_contig7622.16546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=275bp
MLVLLTAVLVIFAVVLFFRVATVTLVDQLSAEIARRVSAVEGGLRVVRDG
LEQSAGFFVDLPGGLVEVARRVMSIEAHMARLRNGVSSLAELVFCIVPIC
VGVVLHVAALWQAMRGVTRRLADVEGWLRNAVVVVADLVTTLWAAIGNLR
ADILELKRCLGQTQQALEDTQKALGRTQQALEQARHDLAQTRQDLERQDL
NYRVGQVEDDTRHLKEDKADKADGVPGGGGGGDGSRKRDFGSRAHQRVQH
KANRSKPPKESVAARGQQHATSSH*
back to top

mRNA from alignment at L-elsbetiae_contig7622:454..1497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7622.16546.1 ID=mRNA_L-elsbetiae_contig7622.16546.1|Name=mRNA_L-elsbetiae_contig7622.16546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig7622:454..1497+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGGGAACGCCAGTTCGCGATGCTCGTGTTGCTGACGGCCGTTCTCGTC
ATCTTCGCGGTTGTCCTCTTCTTCCGGGTTGCCACCGTAACCCTGGTAGA
CCAACTGTCGGCGGAGATCGCAAGGCGGGTGAGCGCGGTCGAGGGCGGCC
TGCGCGTGGTACGGGACGGTTTGGAACAGTCGGCGGGGTTCTTCGTAGAC
CTCCCTGGTGGCCTGGTGGAGGTGGCGCGCCGGGTCATGTCGATCGAGGC
GCACATGGCAAGGCTGAGGAACGGGGTGTCATCATTGGCCGAGCTGGTGT
TTTGCATCGTCCCGATCTGCGTCGGCGTGGTCTTGCACGTCGCCGCCCTG
TGGCAGGCGATGAGGGGGGTGACGCGCCGGCTTGCGGACGTCGAGGGCTG
GCTGCGGAACGCGGTTGTCGTGGTGGCCGACCTCGTCACTACACTGTGGG
CGGCCATCGGTAATCTGAGAGCCGACATCCTCGAGCTGAAGCGGTGCCTT
GGGCAGACCCAGCAGGCCCTTGAGGATACCCAGAAGGCCCTCGGGCGGAC
CCAGCAGGCCCTTGAGCAGGCGCGGCATGACCTTGCGCAGACCCGGCAGG
ACCTTGAAAGGCAGGATCTGAATTACAGGGTGGGGCAAGTCGAGGATGAT
ACCCGGCACCTGAAGGAGGACAAGGCGGACAAGGCGGACGGGGTCCCCGG
CGGAGGAGGAGGAGGGGATGGAAGCCGAAAGAGGGACTTTGGTTCTCGCG
CGCATCAAAGAGTCCAGCACAAGGCCAACAGGAGCAAGCCGCCCAAGGAG
AGCGTGGCGGCACGCGGCCAGCAACACGCCACCTCATCGCACTGACGCCG
CATGCGTTGATCTGGTGGCGAGAGCTCGCTTACACGCTCCCCGTTTCTCT
CTTGTTGGGGTGTGGAGTACAGCCGTAGAGCCGCATACTGTTCTGTACCG
GTACAGCAGTACGAACTATGCATCTGGCTTCTTGGCTTGGTTTTATTTTT
AAGAGGGCGTCTACTGTTGCCATGATGAGACTCATCGGGTTGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7622:454..1497+

>mRNA_L-elsbetiae_contig7622.16546.1 ID=mRNA_L-elsbetiae_contig7622.16546.1|Name=mRNA_L-elsbetiae_contig7622.16546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1650bp|location=Sequence derived from alignment at L-elsbetiae_contig7622:454..1497+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGTGTTGCTGACGGCCGTTCTCGTCATCTTCGCGGTTGTCCTCTT
CTTCCGGGTTGCCACCGTAACCCTGGTAGACCAACTGTCGGCGGAGATCG
CAAGGCGGGTGAGCGCGGTCGAGGGCGGCCTGCGCGTGGTACGGGACGGT
TTGGAACAGTCGGCGGGGTTCTTCGTAGACCTCCCTGGTGGCCTGGTGGA
GGTGGCGCGCCGGGTCATGTCGATCGAGGCGCACATGGCAAGGCTGAGGA
ACGGGGTGTCATCATTGGCCGAGCTGGTGTTTTGCATCGTCCCGATCTGC
GTCGGCGTGGTCTTGCACGTCGCCGCCCTGTGGCAGGCGATGAGGGGGGT
GACGCGCCGGCTTGCGGACGTCGAGGGCTGGCTGCGGAACGCGGTTGTCG
TGGTGGCCGACCTCGTCACTACACTGTGGGCGGCCATCGGTAATCTGAGA
GCCGACATCCTCGAGCTGAAGCGGTGCCTTGGGCAGACCCAGCAGGCCCT
TGAGGATACCCAGAAGGCCCTCGGGCGGACCCAGCAGGCCCTTGAGCAGG
CGCGGCATGACCTTGCGCAGACCCGGCAGGACCTTGAAAGGCAGGATCTG
AATTACAGGGTGGGGCAAGTCGAGGATGATACCCGGCACCTGAAGGAGGA
CAAGGCGGACAAGGCGGACGGGGTCCCCGGCGGAGGAGGAGGAGGGGATG
GAAGCCGAAAGAGGGACTTTGGTTCTCGCGCGCATCAAAGAGTCCAGCAC
AAGGCCAACAGGAGCAAGCCGCCCAAGGAGAGCGTGGCGGCACGCGGCCA
GCAACACGCCACCTCATCGCACTGAATGCTCGTGTTGCTGACGGCCGTTC
TCGTCATCTTCGCGGTTGTCCTCTTCTTCCGGGTTGCCACCGTAACCCTG
GTAGACCAACTGTCGGCGGAGATCGCAAGGCGGGTGAGCGCGGTCGAGGG
CGGCCTGCGCGTGGTACGGGACGGTTTGGAACAGTCGGCGGGGTTCTTCG
TAGACCTCCCTGGTGGCCTGGTGGAGGTGGCGCGCCGGGTCATGTCGATC
GAGGCGCACATGGCAAGGCTGAGGAACGGGGTGTCATCATTGGCCGAGCT
GGTGTTTTGCATCGTCCCGATCTGCGTCGGCGTGGTCTTGCACGTCGCCG
CCCTGTGGCAGGCGATGAGGGGGGTGACGCGCCGGCTTGCGGACGTCGAG
GGCTGGCTGCGGAACGCGGTTGTCGTGGTGGCCGACCTCGTCACTACACT
GTGGGCGGCCATCGGTAATCTGAGAGCCGACATCCTCGAGCTGAAGCGGT
GCCTTGGGCAGACCCAGCAGGCCCTTGAGGATACCCAGAAGGCCCTCGGG
CGGACCCAGCAGGCCCTTGAGCAGGCGCGGCATGACCTTGCGCAGACCCG
GCAGGACCTTGAAAGGCAGGATCTGAATTACAGGGTGGGGCAAGTCGAGG
ATGATACCCGGCACCTGAAGGAGGACAAGGCGGACAAGGCGGACGGGGTC
CCCGGCGGAGGAGGAGGAGGGGATGGAAGCCGAAAGAGGGACTTTGGTTC
TCGCGCGCATCAAAGAGTCCAGCACAAGGCCAACAGGAGCAAGCCGCCCA
AGGAGAGCGTGGCGGCACGCGGCCAGCAACACGCCACCTCATCGCACTGA
back to top