mRNA_L-elsbetiae_contig7618.16540.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7618.16540.1
Unique NamemRNA_L-elsbetiae_contig7618.16540.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Match: D7G5G4_ECTSI (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G4_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 2.150e-93
Identity = 130/155 (83.87%), Postives = 142/155 (91.61%), Query Frame = 1
Query:   19 GSPWTITHRPFENNVHKIAYAVLPLLLLLRVVNPGPAVVALGVTFLVGSLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWKLDPSVKEIALSTGWLPFSDVPAAA 483
            GSPWTIT+RPFENNVHKIAYAVLPLL LLR+VNPGPA VALGV FLVGSLMSNEFHRFAHMT PP +V  LQ+ G++VSR+EHGRHHSSPFEEKYCIVTG+CNGPLDHFRVFRF+ERV+Y LNGVEPIAWKLDPSVKE+AL+TGWLPFS   A A
Sbjct:   77 GSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPGPAGVALGVAFLVGSLMSNEFHRFAHMTSPPPIVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGVCNGPLDHFRVFRFMERVVYELNGVEPIAWKLDPSVKEVALATGWLPFSSAVAGA 231          
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Match: A0A6H5KFV9_9PHAE (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV9_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 4.240e-91
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1
Query:   19 GSPWTITHRPFENNVHKIAYAVLPLLLLLRVVNPGPAVVALGVTFLVGSLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWKLDPSVKEIALSTGWLPFSDVPAAA 483
            GSPWTIT+RPFENNVHKIAYAVLPLL LLR+VNPGPA VALGVTFLVGSLMSNEFHRFAHMT PP LV  LQ+ G++VSR+EHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRF+ERV+Y LNGVEPIAWKLDPSVKE+AL+T WLPFS   A A
Sbjct:  242 GSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPGPAGVALGVTFLVGSLMSNEFHRFAHMTSPPPLVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFMERVVYELNGVEPIAWKLDPSVKEVALATRWLPFSSAVAGA 396          
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Match: A0A835ZEB7_9STRA (Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEB7_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.580e-47
Identity = 80/144 (55.56%), Postives = 101/144 (70.14%), Query Frame = 1
Query:   22 SPWTITHRPFENNVHKIAYAVLPLLLLLRVVNPGPAVVALGVTFLVGSLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWKLDPS--VKEIALST 447
            SPWTIT+R F NNVHK+AY VLPLL LL + +PGPA    GV+ L+G LM  E H+++HM  PP  V  LQ+ G+ +S++EHG HH+SPFE KYCIVTG CN  +D   ++R LERV+Y   GVEP  WKLD +  +K  AL T
Sbjct:  170 SPWTITYRNFANNVHKVAYGVLPLLGLLALSHPGPAGTMFGVSALMGLLMCQELHKYSHMVRPPQWVARLQQSGIILSKKEHGLHHTSPFEGKYCIVTGHCNEIMDSTNLYRHLERVVYERTGVEPNCWKLDTTGEIKAAALGT 313          
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Match: A0A7S2W8D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8D5_9STRA)

HSP 1 Score: 162 bits (409), Expect = 5.660e-46
Identity = 75/141 (53.19%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   22 SPWTITHRPFENNVHKIAYAVLPLLLLLRVVNPGPAVVALGVTFLVGSLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWKLDPSVKEIALS 444
            +PWTITHR F NNVHKIA A +PL LL+ V+   P      V F    ++S EFH+ +H   PP     LQ   + +SR+EHG HHSSPFE  YCI+TG+CN PLD F V+R LE ++YR+NGVEP  WK DPS+K+ +LS
Sbjct:  189 NPWTITHRSFFNNVHKIAQAAIPLTLLVCVLTTSPEARLFWVIFFNAQILSQEFHKLSHTVNPPPWASWLQARNVILSRKEHGLHHSSPFESHYCILTGMCNKPLDRFNVWRRLEAIVYRVNGVEPNCWKEDPSLKKFSLS 329          
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Match: A0A6S9FHC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FHC8_HETAK)

HSP 1 Score: 145 bits (365), Expect = 1.160e-39
Identity = 69/141 (48.94%), Postives = 89/141 (63.12%), Query Frame = 1
Query:   22 SPWTITHRPFENNVHKIAYAVLPLLLLLRVVNPGPAVVALGVTFLVGSLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWKLDPSVKEIALS 444
            +PWTIT+RPF NNVHKI    +P+ L+   +          V +L   ++S EFH+ +HM  PPA    LQ   + +SR+ HG HHSSPFE  YCI+TG CN  LD  R+FR LE+++Y  NGVEP  WKLDP VK  AL+
Sbjct:  167 APWTITYRPFANNVHKICKVAIPIALIANALPLALPAKLFTVLWLCFQVLSQEFHKLSHMVNPPAWAQVLQEKNVIISRKVHGLHHSSPFEGNYCILTGWCNQALDQSRLFRGLEKLVYEWNGVEPNCWKLDPKVKAEALA 307          
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Match: A0A7S2B321_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B321_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.410e-38
Identity = 69/143 (48.25%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   22 SPWTITHRPFENNVHKIAYAVLPLLLLLRVVNPGPAVVALGVTFLVGSLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWKLD--PSVKEIALS 444
            +PWTITHR F NNVHKIA +V+PLL+L  +    P      V FL    MS EFH+ +HM +P   V  +QR  L++S+  H  HHSSPFE  YCI+TG+CN  LD   V+R +E +IY++NGVEP  W+ +    +K  ALS
Sbjct:  152 TPWTITHRSFFNNVHKIARSVIPLLMLAMLCTSSPCARLFWVIFLNSQTMSQEFHKLSHMPKPSPFVQWMQRNNLAISKEIHMAHHSSPFEAHYCILTGVCNKALDDANVWRRMEAIIYKINGVEPNCWREEGGEELKAFALS 294          
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Match: K8YWU6_NANGC (Lipid_desat domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWU6_NANGC)

HSP 1 Score: 138 bits (348), Expect = 1.040e-37
Identity = 64/131 (48.85%), Postives = 86/131 (65.65%), Query Frame = 1
Query:   22 SPWTITHRPFENNVHKIAYAVLPLLLLLRVVNPGPAVVALGVTFLVG-SLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWK 411
            +PWTIT+R F NNVHKI    +P +L +  ++P   +V L  T      ++S EFH+ +H+++PPA    LQ LGL +SR+EHG+HHSSPFE  YCI+TG CN  LD    FRFLE+ +Y + GV P  WK
Sbjct:   96 APWTITYRQFSNNVHKITKITIPAMLAVVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWK 226          
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Match: A0A0G4GQ94_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GQ94_9ALVE)

HSP 1 Score: 140 bits (354), Expect = 1.300e-37
Identity = 70/138 (50.72%), Postives = 89/138 (64.49%), Query Frame = 1
Query:   22 SPWTITHRPFENNVHKIAYAVLPLLLLLRVVNPG-PAVVALGVTFLVGSLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWKLDPSVKE 432
            +PWTIT+R FENN  KI YA   ++ L  ++  G P        F V    + EFH+++HMT PPALV  LQ  GL +SR+EHG+HH+SPFE  YCI+ G CN PLD    FRFLER +  L G EP +WKLD S++E
Sbjct:  204 APWTITYRDFENNTFKICYAAGAIVALSFLLLGGSPFWQTFWTVFAVSQAFAQEFHKYSHMTNPPALVRRLQDAGLILSRKEHGQHHNSPFEGHYCILFGFCNRPLDSIGFFRFLERRVVALGGHEPNSWKLDESLRE 341          
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Match: A0A0G4F217_VITBC (Lipid_desat domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F217_VITBC)

HSP 1 Score: 139 bits (349), Expect = 6.880e-37
Identity = 65/136 (47.79%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   25 PWTITHRPFENNVHKIAYAVLPLLLLLRVVNPGPAVVALGVTFLVGSLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWKLDPSVKE 432
            PWTIT+RPF NNV+KI Y VL ++    ++   PAV      F +  +M+ EFH+++HMT+PP +V  LQ +GL + R+EHG HHS PFE  Y I+ G  N  LDH +VFR +ER IY+ NG  P +WKLD  +++
Sbjct:  203 PWTITYRPFANNVYKICYGVLLIMATTFILQAPPAVRVFMTVFGLSQVMAQEFHKYSHMTKPPIIVQRLQGMGLMLPRKEHGLHHSEPFEGHYSILFGWFNPLLDHSQVFRLMERAIYKWNGHMPNSWKLDERLRQ 338          
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Match: W7U0R7_9STRA (Kua-ubiquitin conjugating enzyme hybrid, localization n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0R7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 9.500e-37
Identity = 64/131 (48.85%), Postives = 86/131 (65.65%), Query Frame = 1
Query:   22 SPWTITHRPFENNVHKIAYAVLPLLLLLRVVNPGPAVVALGVTFLVG-SLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWK 411
            +PWTIT+R F NNVHKI    +P +L +  ++P   +V L  T      ++S EFH+ +H+++PPA    LQ LGL +SR+EHG+HHSSPFE  YCI+TG CN  LD    FRFLE+ +Y + GV P  WK
Sbjct:  208 APWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWK 338          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7618.16540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5G4_ECTSI2.150e-9383.87Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KFV9_9PHAE4.240e-9185.16Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZEB7_9STRA1.580e-4755.56Kua-ubiquitin conjugating enzyme hybrid localizati... [more]
A0A7S2W8D5_9STRA5.660e-4653.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6S9FHC8_HETAK1.160e-3948.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2B321_9STRA4.410e-3848.25Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K8YWU6_NANGC1.040e-3748.85Lipid_desat domain-containing protein n=2 Tax=Mono... [more]
A0A0G4GQ94_9ALVE1.300e-3750.72Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4F217_VITBC6.880e-3747.79Lipid_desat domain-containing protein n=2 Tax=Vitr... [more]
W7U0R7_9STRA9.500e-3748.85Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7618contigL-elsbetiae_contig7618:6848..9586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.0
Seed ortholog evalue1.8e-73
Seed eggNOG ortholog2880.D7G5G4
Preferred nameTMEM189
KEGG koko:K10704,ko:K20417,ko:K20656
KEGG Pathwayko04624,map04624
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006082,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009941,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016491,GO:0016567,GO:0016705,GO:0016740,GO:0019538,GO:0019637,GO:0019752,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031090,GO:0031224,GO:0031371,GO:0031625,GO:0031967,GO:0031969,GO:0031975,GO:0032446,GO:0032787,GO:0032991,GO:0033554,GO:0033559,GO:0034976,GO:0035370,GO:0036211,GO:0036503,GO:0042170,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046471,GO:0046486,GO:0050896,GO:0051603,GO:0051716,GO:0052637,GO:0055114,GO:0061630,GO:0061659,GO:0070534,GO:0070647,GO:0071704,GO:0072330,GO:0080132,GO:0080167,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1902494,GO:1990234
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG3011@1,KOG3011@2759
EC1.14.19.43
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04131
Ec32 ortholog descriptionB-domain containing protein Kua
Ec32 orthologEc-22_000510.1
Exons3
Model size483
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7618.16540.1prot_L-elsbetiae_contig7618.16540.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7618 6848..9586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816846.5960712-CDS-L-elsbetiae_contig7618:6847..69801622816846.5960712-CDS-L-elsbetiae_contig7618:6847..6980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7618 6848..6980 -
1691683857.8451405-CDS-L-elsbetiae_contig7618:6847..69801691683857.8451405-CDS-L-elsbetiae_contig7618:6847..6980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7618 6848..6980 -
1622816846.6069186-CDS-L-elsbetiae_contig7618:8277..84501622816846.6069186-CDS-L-elsbetiae_contig7618:8277..8450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7618 8278..8450 -
1691683857.860356-CDS-L-elsbetiae_contig7618:8277..84501691683857.860356-CDS-L-elsbetiae_contig7618:8277..8450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7618 8278..8450 -
1622816846.6190789-CDS-L-elsbetiae_contig7618:9409..95861622816846.6190789-CDS-L-elsbetiae_contig7618:9409..9586Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7618 9410..9586 -
1691683857.8728106-CDS-L-elsbetiae_contig7618:9409..95861691683857.8728106-CDS-L-elsbetiae_contig7618:9409..9586Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7618 9410..9586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7618.16540.1

>prot_L-elsbetiae_contig7618.16540.1 ID=prot_L-elsbetiae_contig7618.16540.1|Name=mRNA_L-elsbetiae_contig7618.16540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MPTPTTGSPWTITHRPFENNVHKIAYAVLPLLLLLRVVNPGPAVVALGVT
FLVGSLMSNEFHRFAHMTEPPALVGGLQRLGLSVSRREHGRHHSSPFEEK
YCIVTGICNGPLDHFRVFRFLERVIYRLNGVEPIAWKLDPSVKEIALSTG
WLPFSDVPAAA
back to top

mRNA from alignment at L-elsbetiae_contig7618:6848..9586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7618.16540.1 ID=mRNA_L-elsbetiae_contig7618.16540.1|Name=mRNA_L-elsbetiae_contig7618.16540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2739bp|location=Sequence derived from alignment at L-elsbetiae_contig7618:6848..9586- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGACACCAACCACAGGTTCGCCGTGGACGATAACCCACCGGCCGTT CGAGAACAACGTGCACAAGATCGCGTACGCGGTCCTTCCGCTCTTGCTGC TGCTTCGCGTCGTCAACCCTGGCCCCGCGGTGGTCGCCCTCGGAGTGACG TTCCTGGTGGGGTCGCTCATGTCGAATGTGAGTTGCGGGAGATGATGCAC ACCTGCCCATAACCTTCCGTTTTTCAGTATACCCTTTTTTTAGGGTACAT GAGCTATATCCTGTGTGACCACGGGAATCAAATGTGAGTTGCGGGAGATA AAGGTATACCTGCCCATAGCCTTTCGTTTTTCAGTACCATATACCCGTTT TTGAGGGTACATCAGTTATCCTGTGTGACCACGGGAATCATGTCGAATGT GAGTTGCGGGAGATAAAGGTATACCTGCCCATAGCCTTTCGTTTTTCAGT ACCACATACCCTTTTTTGGGGGTACATCAGTTGTCCTGTGTGACCACGGG AATCATGTCGAATGTGAGTTGCGGGAGAGATAAATGTATACCTGCCCATA ACCTTTCGTTTTCAGTTGTATACCCTTCTTTTAGGGTACATAAGTTATAT CCTGTGTGACCACGGGAATCGGCCGCGCCAGTGTTGGATTAGTACGGACT CATGGAGGTGTGCTGGATAGAGAGATCGGGATGTTTTTTTTTTTTATGTG AAGACAATAACAACAACCTACACGGAGGATAGGACTTGCTTGCTTGCTCC CCGTGAAACGATTTTCAAAGCTTGAGTACTCCGCAGCGAGAAGAGTGCCA GTCCCGACAAGGACGGGGCGTTAGAGTTATCTCTTCAAGAGCTGTCCGAA AACGTGTCGTTTGGTATTAGAATCATACTCGTTGCGGAGTAACCGAGCTT TGAAAAACGGTCCAGGGTGCGTGTTATCTTGTGCCGTACACGGTACAACA CCTTATGTGTATGTACCTCTTCGCAGTGCCTGAGAGGATGTATTTTTTGC GATGTCTTGTGCTATTTAACCGTGGAGCTTTGGTGCTGCTAATTGTTGTG GTGAGTTTTTCCGCCCAAAAAAAACGCCAACGGCGGTTCTACTTACGTGG CTCTCCGTGCGTGCGGTACATACATACACATGACAGGAATTCCACCGCTT CGCGCACATGACGGAGCCCCCTGCGCTGGTGGGCGGTCTCCAGAGGCTGG GCCTGTCCGTCAGCCGCAGGGAGCACGGGCGGCACCACAGCAGTCCCTTC GAAGAGAAGTACTGCATCGTGACCGGAATCTGCAACGGGCCGCTGGACCA CTTTCGAGTGTGAGTGCGCCGCCGGTGAAGAACACGCCTTCGGCACCAAT CTAGACTAAATAAAAACCCAATTATTCGACGACGGTTTCGCATTCATATG AAACTCGTTTTGCCTGTGCCTGCTGCTGCTTCGGCAAACCTGCCCGTTTT CGAGTGTGAGTGTACCGCCGGTGAACACGCCTTCGGAGCCAATCTAGACT AAATAAAAACCCAATTATTCGACGGTTTCGCACTCAGATGAAACTCGTTT TGCCTGTGCCTGCTGCTGCTTCGGCAAACCTGCCCGTTTTCGAGTGTGAG TGCGCCGCCGGTGAACTCGCCTTCGAAACCAATCTAGACTAAATAAAAAC CCAAATATTCGACATTTTCGCACTCAAACGAAACTCGTTTTGCCTGTGCC TGCTGCTGCTTCAGCGAGCCTGCCCGTTTTCGAGTGCGAGTGCGTGACCT CCGTCTGACGCCTCTCTTTCCTATCTTTGAATGGATTCCCTGGTGGCTAG ATCAACAATATTTGTTCGTTTTTTTCTAAAGCTCTTGTGAGAGGAGGGGG AGGAGGGAGGAAGGAAAGGCCCGACCGCCGCGTTTCGTGTCAAAGCAGAA CATTATATACTCCTTTTCGTTTTTTTTTTTTTTGAACAAGCAGGGGGATG CGTGCATCATGTGCTGCATGTGCTGCACATGATGCACGCATTCCCTGTTC CCGCAGAACATGGGCACACAATTATGTAGCAGCAGTAAACAGCTTTCAAG GTGTTATTGTACGACGGAGCCGCTGGTGTGTAAGCTGGCGGCGAGTAACT GTGGTAAGGGCGCGGCTGGTTTTCGAAGGTGTCACGACGGAGCTGCTGCT GGTGTGAGCTGGCAGCGTGTAATTTTGGTAAGCAGCGCGGCCGGACCGGA CAAGACAGGGACGGGGCACCGAGGGAAGAGATAGCATGTATTATTTACCC CCATGATCGAGCGCATCGAAGACGATCCTCTGAGCGTGTTTTCTGTCTGT CTGTCTCTCTCTCTCTCTGCCTTGACCACAGCAGTGTTTTTCTTGGATTT TTCTTCTCTCGTCCATTGCACTACATACCGCTGTGCCCCCCCCCCCCCGA CCGCCTCGACCTCACGCTATTATTGCACGGATGTAGAGGAGGCGAGGTTT TTGCTCCTTCGCATGGCCGCGCCGGAGATGTACCCCCCCCCCACCCGCGC GCGCGTCTCGATTTCATAAGTGTCTGATTGCTGCTCCCTCTCGCTTCCAC TCTTTCCACCCACCACCACCACCACCATCACCACCACATCACACACACAC ACGCAGATTCCGGTTCTTGGAGAGGGTGATCTACCGGCTGAACGGCGTGG AGCCTATCGCCTGGAAGCTGGACCCCTCCGTCAAAGAGATCGCGCTGTCC ACGGGTTGGCTGCCGTTCTCCGACGTCCCCGCCGCCGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7618:6848..9586-

>mRNA_L-elsbetiae_contig7618.16540.1 ID=mRNA_L-elsbetiae_contig7618.16540.1|Name=mRNA_L-elsbetiae_contig7618.16540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig7618:6848..9586- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGACACCAACCACAGGTTCGCCGTGGACGATAACCCACCGGCCGTT
CGAGAACAACGTGCACAAGATCGCGTACGCGGTCCTTCCGCTCTTGCTGC
TGCTTCGCGTCGTCAACCCTGGCCCCGCGGTGGTCGCCCTCGGAGTGACG
TTCCTGGTGGGGTCGCTCATGTCGAATATGCCGACACCAACCACAGGTTC
GCCGTGGACGATAACCCACCGGCCGTTCGAGAACAACGTGCACAAGATCG
CGTACGCGGTCCTTCCGCTCTTGCTGCTGCTTCGCGTCGTCAACCCTGGC
CCCGCGGTGGTCGCCCTCGGAGTGACGTTCCTGGTGGGGTCGCTCATGTC
GAATGAATTCCACCGCTTCGCGCACATGACGGAGCCCCCTGCGCTGGTGG
GCGGTCTCCAGAGGCTGGGCCTGTCCGTCAGCCGCAGGGAGCACGGGCGG
CACCACAGCAGTCCCTTCGAAGAGAAGTACTGCATCGTGACCGGAATCTG
CAACGGGCCGCTGGACCACTTTCGAGTGAATTCCACCGCTTCGCGCACAT
GACGGAGCCCCCTGCGCTGGTGGGCGGTCTCCAGAGGCTGGGCCTGTCCG
TCAGCCGCAGGGAGCACGGGCGGCACCACAGCAGTCCCTTCGAAGAGAAG
TACTGCATCGTGACCGGAATCTGCAACGGGCCGCTGGACCACTTTCGAGT
ATTCCGGTTCTTGGAGAGGGTGATCTACCGGCTGAACGGCGTGGAGCCTA
TCGCCTGGAAGCTGGACCCCTCCGTCAAAGAGATCGCGCTGTCCACGGGT
TGGCTGCCGTTCTCCGACGTCCCCGCCGCCGCCATTCCGGTTCTTGGAGA
GGGTGATCTACCGGCTGAACGGCGTGGAGCCTATCGCCTGGAAGCTGGAC
CCCTCCGTCAAAGAGATCGCGCTGTCCACGGGTTGGCTGCCGTTCTCCGA
CGTCCCCGCCGCCGCC
back to top