mRNA_L-elsbetiae_contig7600.16518.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7600.16518.1
Unique NamemRNA_L-elsbetiae_contig7600.16518.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7600.16518.1 vs. uniprot
Match: A0A6H5K771_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K771_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.370e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 VLRGGDTSELKAVKRVVWLAVNVAYNLRLEVSYLNDRRACLVPSLLP 141
            VLRGGDT+ELKAVKRVVWLAVNVAYNLRLEVSYLNDRRACLVPSLLP
Sbjct:    2 VLRGGDTAELKAVKRVVWLAVNVAYNLRLEVSYLNDRRACLVPSLLP 48
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BLAST of mRNA_L-elsbetiae_contig7600.16518.1 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.540e-20
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 VLRGGDTSELKAVKRVVWLAVNVAYNLRLEVSYLNDRRACLVPSLLP 141
            VLRGGDT+ELKAVKRVVWLAV VAYNLRLEVSYLNDRRACLVPSLLP
Sbjct:  698 VLRGGDTAELKAVKRVVWLAVKVAYNLRLEVSYLNDRRACLVPSLLP 744
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BLAST of mRNA_L-elsbetiae_contig7600.16518.1 vs. uniprot
Match: A0A7S2CEE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CEE6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.470e-7
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 VLRGGDTSELKAVKRVVWLAVNVAYNLRLEVSYLNDR 111
            +LRG D   L+A K++V  A+NVAYNLRLE SYLNDR
Sbjct:   66 ILRGADKKTLRAAKQIVRFAINVAYNLRLEQSYLNDR 102
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BLAST of mRNA_L-elsbetiae_contig7600.16518.1 vs. uniprot
Match: A0A7S2U7Q0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7Q0_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.350e-5
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 VLRGGDTSELKAVKRVVWLAVNVAYNLRLEVSYLNDRRACLVPS 132
            VLRG     LK +KRV+   +NVAYNL+LE SYL DR A L P+
Sbjct:   85 VLRGASRPILKQIKRVLRFLINVAYNLKLETSYLRDRCARLPPN 128
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7600.16518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K771_9PHAE2.370e-2197.87PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G3Z3_ECTSI1.540e-2095.741-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7S2CEE6_9STRA3.470e-764.86Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2U7Q0_9STRA1.350e-556.82Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7600contigL-elsbetiae_contig7600:7727..7870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D7G3Z3
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0230@2759
EC2.7.1.150
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.0317385-CDS-L-elsbetiae_contig7600:7726..78701622816845.0317385-CDS-L-elsbetiae_contig7600:7726..7870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7600 7727..7870 +
1691683856.802173-CDS-L-elsbetiae_contig7600:7726..78701691683856.802173-CDS-L-elsbetiae_contig7600:7726..7870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7600 7727..7870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7600.16518.1prot_L-elsbetiae_contig7600.16518.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7600 7727..7870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7600.16518.1

>prot_L-elsbetiae_contig7600.16518.1 ID=prot_L-elsbetiae_contig7600.16518.1|Name=mRNA_L-elsbetiae_contig7600.16518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
VLRGGDTSELKAVKRVVWLAVNVAYNLRLEVSYLNDRRACLVPSLLPS
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mRNA from alignment at L-elsbetiae_contig7600:7727..7870+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7600.16518.1 ID=mRNA_L-elsbetiae_contig7600.16518.1|Name=mRNA_L-elsbetiae_contig7600.16518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=144bp|location=Sequence derived from alignment at L-elsbetiae_contig7600:7727..7870+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTGAGAGGCGGCGACACCTCGGAGCTCAAGGCCGTCAAGCGCGTCGT
CTGGCTCGCCGTGAACGTGGCGTACAACCTCCGGCTCGAGGTGTCGTACC
TGAACGACCGCCGGGCGTGCCTGGTGCCGTCCCTGCTGCCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7600:7727..7870+

>mRNA_L-elsbetiae_contig7600.16518.1 ID=mRNA_L-elsbetiae_contig7600.16518.1|Name=mRNA_L-elsbetiae_contig7600.16518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig7600:7727..7870+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTGAGAGGCGGCGACACCTCGGAGCTCAAGGCCGTCAAGCGCGTCGT
CTGGCTCGCCGTGAACGTGGCGTACAACCTCCGGCTCGAGGTGTCGTACC
TGAACGACCGCCGGGCGTGCCTGGTGCCGTCCCTGCTGCCCTCCGTGCTG
AGAGGCGGCGACACCTCGGAGCTCAAGGCCGTCAAGCGCGTCGTCTGGCT
CGCCGTGAACGTGGCGTACAACCTCCGGCTCGAGGTGTCGTACCTGAACG
ACCGCCGGGCGTGCCTGGTGCCGTCCCTGCTGCCCTCC
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