prot_L-elsbetiae_contig760.16515.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig760.16515.1
Unique Nameprot_L-elsbetiae_contig760.16515.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length269
Homology
BLAST of mRNA_L-elsbetiae_contig760.16515.1 vs. uniprot
Match: D8LHU4_ECTSI (Rap2 interacting protein x isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU4_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 5.550e-94
Identity = 169/246 (68.70%), Postives = 186/246 (75.61%), Query Frame = 0
Query:    1 MSWLSSIISGHRDDDVSSKQLQARQRAATRAKLVKNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--------PPLIGGDTPEAVAVCRALEQCLFHRIRVKEFGVIPFWAFLERVERVPLA---GGASRPGPRDRRLSSVRNTIGAVASLSKVSTPLGRARAWMRQCLVSKCLEACVAALLDEERLVKVFYEPTALARCREGSIILLRLCAALESFDLAIDTDQSALNIQPRWPILEE 235
            MSWLSSIISG +D   S KQ++ARQRAATRA+LVKNL                                           PPLIGGDT EAVA+C A+EQCLFHRIRVK+FGVIPFWAFLERVER+PL    GGA R GPR+RRL+SVRNT+GAVASLS VSTPLGRARAW+RQCLV KCLE+CVAALL+E+RLVKVFYEPTALARCREGSIILLRLCAALE+FD+AIDTDQSALN  PRWPILEE
Sbjct:    1 MSWLSSIISGPQDSRDSGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVAPPQQAGGAMGMVSETGGIPRRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTIGGGGAGRQGPRERRLASVRNTVGAVASLSHVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALNTPPRWPILEE 246          
BLAST of mRNA_L-elsbetiae_contig760.16515.1 vs. uniprot
Match: A0A6H5KE74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE74_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 1.500e-89
Identity = 160/230 (69.57%), Postives = 174/230 (75.65%), Query Frame = 0
Query:   25 QRAATRAKLVKNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--------PPLIGGDTPEAVAVCRALEQCLFHRIRVKEFGVIPFWAFLERVERVPLA---GGASRPGPRDRRLSSVRNTIGAVASLSKVSTPLGRARAWMRQCLVSKCLEACVAALLDEERLVKVFYEPTALARCREGSIILLRLCAALESFDLAIDTDQSALNIQPRWPILEEEAEWDRRA 243
            QRAATRAKLVKNL                                           PPLIGGDT EAVA+C A+EQCLFHRIRVK+FGVIPFWAFLERVER+PL    GGA RPGPR+RRL+SVRNT+GAVASLS VSTPLGRARAW+RQCLV KCLE+CVAALL+E+RLVKVFYEPTALARCREGSIILLRLCAALE+FD+AIDTDQSAL+  PRWPILEEE EWDR A
Sbjct:   53 QRAATRAKLVKNLRNAAQALAALQAKQQQEGVAPPQQAGGAMGMVSETGGIPPRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTMGEGGAGRPGPRERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALDTPPRWPILEEEEEWDRLA 282          
BLAST of mRNA_L-elsbetiae_contig760.16515.1 vs. uniprot
Match: UPI000C776D56 (sorting nexin-29-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C776D56)

HSP 1 Score: 58.2 bits (139), Expect = 5.940e-6
Identity = 52/154 (33.77%), Postives = 72/154 (46.75%), Query Frame = 0
Query:   75 LIGGDTPEAVAVCRALEQCLFHRIRVKEFGVIPFWAFLERVERVPLAGGASRPGPRD-RRLSSVRNTIGA--VASLSKVSTPLGRARAWMRQCLVSKCLEACVAALLDEERLVKVFYEPTALARCREGSIILLRLCAALESFDLAIDTDQSALN 225
            L  G+    V +CR LE  L H +R ++  +    A +  V    L GG    G      L S+ N+        LSK+ST LGR RAW+R  L  + LE  + +LL E++ +   YE  A  R  E S++L  + A L S   AI  D   LN
Sbjct:   33 LATGEEETIVELCRQLELVLNHGLRDQDTNL--GLAVIRNVR--DLVGGGEVAGRNLWNLLKSLLNSHEQQRFMLLSKISTDLGRGRAWIRSSLNEQSLERFLLSLLREKQKLNQIYEEWAFLRDDERSVLLPSMAAGLTSVRFAIRIDDPELN 182          
BLAST of mRNA_L-elsbetiae_contig760.16515.1 vs. uniprot
Match: A0A8B8CPB4_CRAVI (sorting nexin-29-like n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CPB4_CRAVI)

HSP 1 Score: 55.8 bits (133), Expect = 3.420e-5
Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = 0
Query:  146 SLSKVSTPLGRARAWMRQCLVSKCLEACVAALLDEERLVKVFYEPTALARCREGSIILLRLCAALESFDLAIDTDQSALN 225
            +L  +ST  GR RAWMR  L    LE  +  +L+ + L+K FYEP A  R +E S ++  + A L S   AI+ D   LN
Sbjct:  113 TLKNISTDSGRGRAWMRSALNEHSLERNMHMILENDDLLKQFYEPWAFLRDQERSSMMPMMAAGLGSILFAINIDNPDLN 192          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig760.16515.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHU4_ECTSI5.550e-9468.70Rap2 interacting protein x isoform 3 n=1 Tax=Ectoc... [more]
A0A6H5KE74_9PHAE1.500e-8969.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000C776D565.940e-633.77sorting nexin-29-like n=1 Tax=Eurytemora affinis T... [more]
A0A8B8CPB4_CRAVI3.420e-540.00sorting nexin-29-like n=2 Tax=Crassostrea virginic... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 30..50
NoneNo IPR availableGENE3D1.20.58.900coord: 20..225
e-value: 1.3E-29
score: 105.1
NoneNo IPR availablePANTHERPTHR47194FAMILY NOT NAMEDcoord: 146..230
IPR004012RUN domainSMARTSM00593893paper3coord: 157..220
e-value: 8.1E-7
score: 38.7
IPR004012RUN domainPFAMPF02759RUNcoord: 87..219
e-value: 8.5E-13
score: 48.4
IPR004012RUN domainPROSITEPS50826RUNcoord: 77..222
score: 23.716
IPR037213RUN domain superfamilySUPERFAMILY140741RUN domain-likecoord: 70..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig760contigL-elsbetiae_contig760:23602..27076 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig760.16515.1mRNA_L-elsbetiae_contig760.16515.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig760 23557..27076 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig760.16515.1 ID=prot_L-elsbetiae_contig760.16515.1|Name=mRNA_L-elsbetiae_contig760.16515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=269bp
MSWLSSIISGHRDDDVSSKQLQARQRAATRAKLVKNLRNAAQALAALQAR
QRQQSASQQAGGAMGAVGAGGAPPLIGGDTPEAVAVCRALEQCLFHRIRV
KEFGVIPFWAFLERVERVPLAGGASRPGPRDRRLSSVRNTIGAVASLSKV
STPLGRARAWMRQCLVSKCLEACVAALLDEERLVKVFYEPTALARCREGS
IILLRLCAALESFDLAIDTDQSALNIQPRWPILEEEAEWDRRAAAAAAAA
AATAASAAAARAPASRSFG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004012Run_dom
IPR037213Run_dom_sf