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Homology
BLAST of mRNA_L-elsbetiae_contig760.16515.1 vs. uniprot
Match: D8LHU4_ECTSI (Rap2 interacting protein x isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU4_ECTSI) HSP 1 Score: 314 bits (805), Expect = 2.830e-94 Identity = 169/246 (68.70%), Postives = 186/246 (75.61%), Query Frame = 1
Query: 46 MSWLSSIISGHRDDDVSSKQLQARQRAATRAKLVKNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--------PPLIGGDTPEAVAVCRALEQCLFHRIRVKEFGVIPFWAFLERVERVPLA---GGASRPGPRDRRLSSVRNTIGAVASLSKVSTPLGRARAWMRQCLVSKCLEACVAALLDEERLVKVFYEPTALARCREGSIILLRLCAALESFDLAIDTDQSALNIQPRWPILEE 750
MSWLSSIISG +D S KQ++ARQRAATRA+LVKNL PPLIGGDT EAVA+C A+EQCLFHRIRVK+FGVIPFWAFLERVER+PL GGA R GPR+RRL+SVRNT+GAVASLS VSTPLGRARAW+RQCLV KCLE+CVAALL+E+RLVKVFYEPTALARCREGSIILLRLCAALE+FD+AIDTDQSALN PRWPILEE
Sbjct: 1 MSWLSSIISGPQDSRDSGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVAPPQQAGGAMGMVSETGGIPRRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTIGGGGAGRQGPRERRLASVRNTVGAVASLSHVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALNTPPRWPILEE 246
BLAST of mRNA_L-elsbetiae_contig760.16515.1 vs. uniprot
Match: A0A6H5KE74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE74_9PHAE) HSP 1 Score: 300 bits (768), Expect = 2.630e-89 Identity = 160/230 (69.57%), Postives = 174/230 (75.65%), Query Frame = 1
Query: 118 QRAATRAKLVKNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--------PPLIGGDTPEAVAVCRALEQCLFHRIRVKEFGVIPFWAFLERVERVPLA---GGASRPGPRDRRLSSVRNTIGAVASLSKVSTPLGRARAWMRQCLVSKCLEACVAALLDEERLVKVFYEPTALARCREGSIILLRLCAALESFDLAIDTDQSALNIQPRWPILEEEAEWDRRA 774
QRAATRAKLVKNL PPLIGGDT EAVA+C A+EQCLFHRIRVK+FGVIPFWAFLERVER+PL GGA RPGPR+RRL+SVRNT+GAVASLS VSTPLGRARAW+RQCLV KCLE+CVAALL+E+RLVKVFYEPTALARCREGSIILLRLCAALE+FD+AIDTDQSAL+ PRWPILEEE EWDR A
Sbjct: 53 QRAATRAKLVKNLRNAAQALAALQAKQQQEGVAPPQQAGGAMGMVSETGGIPPRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTMGEGGAGRPGPRERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALDTPPRWPILEEEEEWDRLA 282
BLAST of mRNA_L-elsbetiae_contig760.16515.1 vs. uniprot
Match: UPI000C776D56 (sorting nexin-29-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C776D56) HSP 1 Score: 58.2 bits (139), Expect = 7.200e-6 Identity = 52/154 (33.77%), Postives = 72/154 (46.75%), Query Frame = 1
Query: 268 LIGGDTPEAVAVCRALEQCLFHRIRVKEFGVIPFWAFLERVERVPLAGGASRPGPRD-RRLSSVRNTIGA--VASLSKVSTPLGRARAWMRQCLVSKCLEACVAALLDEERLVKVFYEPTALARCREGSIILLRLCAALESFDLAIDTDQSALN 720
L G+ V +CR LE L H +R ++ + A + V L GG G L S+ N+ LSK+ST LGR RAW+R L + LE + +LL E++ + YE A R E S++L + A L S AI D LN
Sbjct: 33 LATGEEETIVELCRQLELVLNHGLRDQDTNL--GLAVIRNVR--DLVGGGEVAGRNLWNLLKSLLNSHEQQRFMLLSKISTDLGRGRAWIRSSLNEQSLERFLLSLLREKQKLNQIYEEWAFLRDDERSVLLPSMAAGLTSVRFAIRIDDPELN 182
BLAST of mRNA_L-elsbetiae_contig760.16515.1 vs. uniprot
Match: A0A8B8CPB4_CRAVI (sorting nexin-29-like n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CPB4_CRAVI) HSP 1 Score: 55.8 bits (133), Expect = 4.100e-5 Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 481 SLSKVSTPLGRARAWMRQCLVSKCLEACVAALLDEERLVKVFYEPTALARCREGSIILLRLCAALESFDLAIDTDQSALN 720
+L +ST GR RAWMR L LE + +L+ + L+K FYEP A R +E S ++ + A L S AI+ D LN
Sbjct: 113 TLKNISTDSGRGRAWMRSALNEHSLERNMHMILENDDLLKQFYEPWAFLRDQERSSMMPMMAAGLGSILFAINIDNPDLN 192
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | TLDc domain |
Ec32 ortholog | Ec-18_000490.1 |
Exons | 4 |
Model size | 854 |
Cds size | 807 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816844.8187666-UTR-L-elsbetiae_contig760:23556..23601 | 1622816844.8187666-UTR-L-elsbetiae_contig760:23556..23601 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig760 23557..23601 + |
1691683856.6846855-UTR-L-elsbetiae_contig760:23556..23601 | 1691683856.6846855-UTR-L-elsbetiae_contig760:23556..23601 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig760 23557..23601 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816844.8325737-CDS-L-elsbetiae_contig760:23601..23676 | 1622816844.8325737-CDS-L-elsbetiae_contig760:23601..23676 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig760 23602..23676 + |
1691683856.7018275-CDS-L-elsbetiae_contig760:23601..23676 | 1691683856.7018275-CDS-L-elsbetiae_contig760:23601..23676 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig760 23602..23676 + |
1622816844.8447573-CDS-L-elsbetiae_contig760:24334..24569 | 1622816844.8447573-CDS-L-elsbetiae_contig760:24334..24569 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig760 24335..24569 + |
1691683856.713407-CDS-L-elsbetiae_contig760:24334..24569 | 1691683856.713407-CDS-L-elsbetiae_contig760:24334..24569 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig760 24335..24569 + |
1622816844.8571076-CDS-L-elsbetiae_contig760:25188..25433 | 1622816844.8571076-CDS-L-elsbetiae_contig760:25188..25433 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig760 25189..25433 + |
1691683856.7229834-CDS-L-elsbetiae_contig760:25188..25433 | 1691683856.7229834-CDS-L-elsbetiae_contig760:25188..25433 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig760 25189..25433 + |
1622816844.8698895-CDS-L-elsbetiae_contig760:26824..27076 | 1622816844.8698895-CDS-L-elsbetiae_contig760:26824..27076 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig760 26825..27076 + |
1691683856.7343447-CDS-L-elsbetiae_contig760:26824..27076 | 1691683856.7343447-CDS-L-elsbetiae_contig760:26824..27076 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig760 26825..27076 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig760.16515.1 >prot_L-elsbetiae_contig760.16515.1 ID=prot_L-elsbetiae_contig760.16515.1|Name=mRNA_L-elsbetiae_contig760.16515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=269bp
MSWLSSIISGHRDDDVSSKQLQARQRAATRAKLVKNLRNAAQALAALQAR QRQQSASQQAGGAMGAVGAGGAPPLIGGDTPEAVAVCRALEQCLFHRIRV KEFGVIPFWAFLERVERVPLAGGASRPGPRDRRLSSVRNTIGAVASLSKV STPLGRARAWMRQCLVSKCLEACVAALLDEERLVKVFYEPTALARCREGS IILLRLCAALESFDLAIDTDQSALNIQPRWPILEEEAEWDRRAAAAAAAA AATAASAAAARAPASRSFG back to topmRNA from alignment at L-elsbetiae_contig760:23557..27076+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig760.16515.1 ID=mRNA_L-elsbetiae_contig760.16515.1|Name=mRNA_L-elsbetiae_contig760.16515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3520bp|location=Sequence derived from alignment at L-elsbetiae_contig760:23557..27076+ (Laminarionema elsbetiae ELsaHSoW15) GCCGCTTAGAACGTTGGGTGAGGCACAAGGTGCCACGCATCTGAGATGAG
CTGGCTTTCCTCGATCATTTCTGGCCATCGTGATGACGATGTTTCCAGCA
AGCAGCTGCAAGCGAGACAGGTGAGAGAAATTCGCTGAACGCGAGCATGT
TCAAGTCGGAGCATCTGCCGCGATTGCATTTCATGGCTCTCGTTGTTTTG
ATCAACCATACGCTTAGTGGGGGGTTGCTTAAGTGGTTCCATTGTCGTTA
ATGTTTAGTGCTTACGCTGTGCTCTTCTTGCACGGAGAAGCTCGCTTTAT
AGGTTAATATTTGGCGAGCCGTTGTTGGAGAGGTCCATACTGCCGTTGTC
GACTCATCACGCTTACCACCATCCCGGGACACTTGCACCGACCGATAGAG
ATACCGCTTTCAATTGCTGCACCATTGCTAGAAAACCACCGCCCTATGCG
TCAGTCCCTACGGAGGTACGTTGCCCAGGCACCCGCCGCAATGCGACGCG
GAAACAAAGACATTTTTTTAGCGTGTTCCGGCTTGGGTCCCAGTTCTTGG
GTCCCCGACCAACACCCGCGCGCAGATAACTCCAAGCTGTTGCCGTGACA
TTCCTCCCACAGAGAGACGATCGATATGCAGCACAAAAGAGAAACACACA
AAGCGCAGGAATAGCAGCTGACCTAGCCCTCCTTTGTGCTATTAGCAGGT
ATACGGTAGACCGACCGCCAACAATACGGCAGACGCCGCCTCTGCTGAAC
ACACGTGTCGTTTTTTTTTCTTCGTCAGCGGGCGGCTACCCGGGCAAAGC
TCGTCAAGAACCTTCGGAATGCAGCGCAAGCATTGGCGGCGCTGCAGGCC
CGGCAGCGGCAGCAGTCGGCATCGCAGCAGGCCGGCGGCGCCATGGGCGC
GGTCGGTGCGGGAGGGGCTCCGCCACTGATTGGAGGGGACACCCCCGAGG
CTGTGGCGGTCTGTCGTGCCCTCGAGCAGTGCTTGTTCCACCGCATCAGG
GTGAAAGAGTTCGGTGAGAGAGCCACCAGGAGATGCCATTTTTGCCGCCT
ATGTCTTGCCTTTGTACATAGGTTTATGTGACTTTACCCAACGATAAGAC
CCGAGAGAGACACACCGCAGTTAGACGAGTCTATCGACAACACACGTAGA
TACTGGTTCTTGCGAGGTTCGGTGGTTCAACATCGGAATTTCCGGGTGTA
TTTCTCTACTTGTTTCCGTGCCGGTGGTTTTCTACTCGCAGCCTCGCGGC
ATGCACCCTACTAGCCCAGGTGCTACAAACCGTTGTTTCTTATTTTGATT
GTTGCTCTGGCCCTGAGTCTCGCTTTCTCTGTCTCGCTCTCTTCTCTGTC
GCACGTCTGGATTGGCCTCCACACTCCACACCAGCGTAACTCTGCATCTG
GCATGCTGTTCAACCCCACCGTTTCGATCGCTCCCGCCGTCTTGAGGCCG
TCCCCGTAGCTGCTACTGAGCTGGGCCCCTAACACACCTCTGGCCGCAGT
CTCGCCACGAACCCCCCCCGCCGATAGCGGCGACGTGACCGACCATCCAC
TTCTGCGCATTTTGTCTCTGATGCACCCTCATCTTCGCCTGCTGCTTGTA
TGCACCCCGCCCTCTCACCATTCCTACCCCAGGCGTGATACCCTTCTGGG
CTTTCCTGGAGCGAGTGGAGCGGGTCCCCCTGGCCGGGGGAGCGAGCCGA
CCGGGCCCCCGTGATCGGCGGCTGTCGAGTGTCCGCAACACTATCGGCGC
GGTCGCGTCTCTGAGCAAGGTCTCGACGCCCCTCGGGAGGGCGAGGGCGT
GGATGCGGCAGTGCCTGGTGAGCAAATGCCTCGAGGCCTGCGTGGCGGCG
CTGCTCGACGAGGAGCGCCTGGTCAAGGTGAGAGAGGCGGATCGGACACG
TGCGCTTTGATCTCTTTTTTTTTTTTTTTTTCTTGTGCCGTTGTGGTTTT
TTACCAATTTTAGATTCGGCGTGTCTTTGGCGTACAAAGAGAGAGTTGTA
TCCTCCCGGCTCTTCGTCTCGGCCGCGAATTTTTGGGGGTGATTTGGCGG
CGGCTCGGCGATCCTGCTCTCGCCTTTTCGGTTGCTTGAAGGTGGTGGCG
CAGTGATACGGTACAGATGTTTTTTTTGTGTTTGTTTTTAGGCCATTTCT
TATAGGACCGAAAAAGCTAACCGAAAAGTGTGCATTCGCCCGAAAATGCC
ACTGTGCGCGAGTTCCATGATTATCCAGCAGCCGGCAGAAAAGACCTGAG
CAGCACCCAGTTTTCGGCCCCTAAGGTACCGATTGCAATCCGAGCACTTC
AGGCGTGTGCTTCACGGTGACATCTCTGGGCGTGCCAGTCGTGTGGGGCG
TGGGCGTTGCGTGTGGCGAGAGCTTTGTGTCGGAGTAGAATCTGATCCGA
ACTTTTTTGGTTTCACTTGAACCGAAAAAAGCATACAAATCCGATTCGAT
TCCGAGTCGGAAAGTTCGATCGGATTCTCTACTCCGCCACAAAACTCTCG
CCACACGCAACGCCCACGCCCCACACCATTGGCACGCCCAGAAATATCAC
CATGGAGCACACGCCTGAAGTGCTGCGATTGCAATCGGTGCCCTTGGGGC
GGAGAACTGGGTGCTGCTCAGCTCTTTTCTGCTGGCTGCTGAGTAATCTC
GTATCTCGCGCACAGTGGCATCCATTCTCGGGCAAATGCACACTTTTCGG
TCGGCTTTTTTGTTCGTATAAGAAATTGCCTTAGTTGTGTTGTATTTGTC
GCAAAAACAGAACGAACGCGAATTCAACCTGCCTATTTCGAAATTTAATG
TTGGGACCCGACGTCGCTGGCCACGGGGATGGAATGTATGTTGTAGACTG
GCCGGTCTTGTTCCCTTTTGAAAAATAAACAATGAATCAAAGATTCCTTT
TTAAGTTGGGCACCCTTAACCCAAGAACGAAACAGAGAAGCAGCATCTGC
ATCTCTGATCCTGGGTAACCTTACCCCCTTCGCCTCTTCCCGATCTGAGC
CAAAAGTGAAAGAGGCGTTTGCCGCCCTCGCCGCTGATTGCATCGGCCAA
ATGGCATCCAGCAGCAGAGGTACATCCATAGCAGCGTGAAAATCTTGCCC
CGGAGGCCTGCCTTCCAGCTGCTGCTGTTGAACCTGGTGAAGTTCAGCGC
CCGCACTGCCGTGGTATTTCGGGGAGCTTTCGTTCCCTCCCCGCACGCTC
CGCGCGCGCGTTTGTAAATTCCCTCGCCCGTCACCCGTGCCCCTTTCCCC
CGTCGTCCGACCCCGCAGGTCTTTTACGAGCCGACCGCACTCGCGCGCTG
CCGCGAGGGATCCATCATCCTCCTGCGCCTGTGCGCGGCCCTGGAGTCCT
TCGACCTGGCCATCGACACCGACCAATCAGCTCTCAACATCCAGCCGCGC
TGGCCAATCCTGGAAGAGGAGGCCGAGTGGGACCGCCGCGCTGCTGCTGC
TGCGGCGGCGGCGGCAGCAACAGCGGCGTCAGCGGCAGCCGCCCGTGCCC
CCGCCTCGAGATCATTCGGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig760:23557..27076+ >mRNA_L-elsbetiae_contig760.16515.1 ID=mRNA_L-elsbetiae_contig760.16515.1|Name=mRNA_L-elsbetiae_contig760.16515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1614bp|location=Sequence derived from alignment at L-elsbetiae_contig760:23557..27076+ (Laminarionema elsbetiae ELsaHSoW15) ATGAGCTGGCTTTCCTCGATCATTTCTGGCCATCGTGATGACGATGTTTC CAGCAAGCAGCTGCAAGCGAGACAGATGAGCTGGCTTTCCTCGATCATTT CTGGCCATCGTGATGACGATGTTTCCAGCAAGCAGCTGCAAGCGAGACAG CGGGCGGCTACCCGGGCAAAGCTCGTCAAGAACCTTCGGAATGCAGCGCA AGCATTGGCGGCGCTGCAGGCCCGGCAGCGGCAGCAGTCGGCATCGCAGC AGGCCGGCGGCGCCATGGGCGCGGTCGGTGCGGGAGGGGCTCCGCCACTG ATTGGAGGGGACACCCCCGAGGCTGTGGCGGTCTGTCGTGCCCTCGAGCA GTGCTTGTTCCACCGCATCAGGGTGAAAGAGTTCGCGGGCGGCTACCCGG GCAAAGCTCGTCAAGAACCTTCGGAATGCAGCGCAAGCATTGGCGGCGCT GCAGGCCCGGCAGCGGCAGCAGTCGGCATCGCAGCAGGCCGGCGGCGCCA TGGGCGCGGTCGGTGCGGGAGGGGCTCCGCCACTGATTGGAGGGGACACC CCCGAGGCTGTGGCGGTCTGTCGTGCCCTCGAGCAGTGCTTGTTCCACCG CATCAGGGTGAAAGAGTTCGGCGTGATACCCTTCTGGGCTTTCCTGGAGC GAGTGGAGCGGGTCCCCCTGGCCGGGGGAGCGAGCCGACCGGGCCCCCGT GATCGGCGGCTGTCGAGTGTCCGCAACACTATCGGCGCGGTCGCGTCTCT GAGCAAGGTCTCGACGCCCCTCGGGAGGGCGAGGGCGTGGATGCGGCAGT GCCTGGTGAGCAAATGCCTCGAGGCCTGCGTGGCGGCGCTGCTCGACGAG GAGCGCCTGGTCAAGGCGTGATACCCTTCTGGGCTTTCCTGGAGCGAGTG GAGCGGGTCCCCCTGGCCGGGGGAGCGAGCCGACCGGGCCCCCGTGATCG GCGGCTGTCGAGTGTCCGCAACACTATCGGCGCGGTCGCGTCTCTGAGCA AGGTCTCGACGCCCCTCGGGAGGGCGAGGGCGTGGATGCGGCAGTGCCTG GTGAGCAAATGCCTCGAGGCCTGCGTGGCGGCGCTGCTCGACGAGGAGCG CCTGGTCAAGGTCTTTTACGAGCCGACCGCACTCGCGCGCTGCCGCGAGG GATCCATCATCCTCCTGCGCCTGTGCGCGGCCCTGGAGTCCTTCGACCTG GCCATCGACACCGACCAATCAGCTCTCAACATCCAGCCGCGCTGGCCAAT CCTGGAAGAGGAGGCCGAGTGGGACCGCCGCGCTGCTGCTGCTGCGGCGG CGGCGGCAGCAACAGCGGCGTCAGCGGCAGCCGCCCGTGCCCCCGCCTCG AGATCATTCGGCGTCTTTTACGAGCCGACCGCACTCGCGCGCTGCCGCGA GGGATCCATCATCCTCCTGCGCCTGTGCGCGGCCCTGGAGTCCTTCGACC TGGCCATCGACACCGACCAATCAGCTCTCAACATCCAGCCGCGCTGGCCA ATCCTGGAAGAGGAGGCCGAGTGGGACCGCCGCGCTGCTGCTGCTGCGGC GGCGGCGGCAGCAACAGCGGCGTCAGCGGCAGCCGCCCGTGCCCCCGCCT CGAGATCATTCGGC back to top
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