mRNA_L-elsbetiae_contig760.16513.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig760.16513.1
Unique NamemRNA_L-elsbetiae_contig760.16513.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig760.16513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig760contigL-elsbetiae_contig760:13637..13995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size359
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.5963478-UTR-L-elsbetiae_contig760:13636..136531622816844.5963478-UTR-L-elsbetiae_contig760:13636..13653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig760 13637..13653 +
1691683856.522392-UTR-L-elsbetiae_contig760:13636..136531691683856.522392-UTR-L-elsbetiae_contig760:13636..13653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig760 13637..13653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.6064441-CDS-L-elsbetiae_contig760:13653..139951622816844.6064441-CDS-L-elsbetiae_contig760:13653..13995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 13654..13995 +
1691683856.532123-CDS-L-elsbetiae_contig760:13653..139951691683856.532123-CDS-L-elsbetiae_contig760:13653..13995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 13654..13995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig760.16513.1prot_L-elsbetiae_contig760.16513.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig760 13654..13995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig760.16513.1

>prot_L-elsbetiae_contig760.16513.1 ID=prot_L-elsbetiae_contig760.16513.1|Name=mRNA_L-elsbetiae_contig760.16513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MMGRATLTAAAVARNPRKLHESPVGIAPIAVSVSRTRPPGSNPSAGRSGA
GAPAAPAAAAADTANAGRENGESSAGRSTEAASGAVSCGWRGGEEEESGV
SAGHATPAAPLRAG
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mRNA from alignment at L-elsbetiae_contig760:13637..13995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig760.16513.1 ID=mRNA_L-elsbetiae_contig760.16513.1|Name=mRNA_L-elsbetiae_contig760.16513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=359bp|location=Sequence derived from alignment at L-elsbetiae_contig760:13637..13995+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGGGGGCGCGGGAATGATGGGCAGAGCGACGTTGACGGCGGCGGCG
GTGGCCCGAAACCCGCGCAAGCTCCACGAGTCGCCCGTCGGCATCGCCCC
GATCGCGGTCTCGGTCTCCCGCACCAGACCGCCGGGTTCGAATCCCTCCG
CCGGCCGTTCGGGCGCCGGGGCTCCCGCCGCTCCTGCAGCTGCCGCTGCC
GACACCGCCAACGCAGGCCGAGAGAACGGCGAGAGCTCTGCGGGACGATC
GACAGAGGCCGCAAGCGGGGCTGTCAGCTGCGGCTGGAGAGGAGGAGAGG
AGGAGGAGAGCGGGGTTAGCGCTGGGCACGCCACACCGGCCGCGCCTCTC
CGGGCGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig760:13637..13995+

>mRNA_L-elsbetiae_contig760.16513.1 ID=mRNA_L-elsbetiae_contig760.16513.1|Name=mRNA_L-elsbetiae_contig760.16513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig760:13637..13995+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGGCAGAGCGACGTTGACGGCGGCGGCGGTGGCCCGAAACCCGCG
CAAGCTCCACGAGTCGCCCGTCGGCATCGCCCCGATCGCGGTCTCGGTCT
CCCGCACCAGACCGCCGGGTTCGAATCCCTCCGCCGGCCGTTCGGGCGCC
GGGGCTCCCGCCGCTCCTGCAGCTGCCGCTGCCGACACCGCCAACGCAGG
CCGAGAGAACGGCGAGAGCTCTGCGGGACGATCGACAGAGGCCGCAAGCG
GGGCTGTCAGCTGCGGCTGGAGAGGAGGAGAGGAGGAGGAGAGCGGGGTT
AGCGCTGGGCACGCCACACCGGCCGCGCCTCTCCGGGCGGGAATGATGGG
CAGAGCGACGTTGACGGCGGCGGCGGTGGCCCGAAACCCGCGCAAGCTCC
ACGAGTCGCCCGTCGGCATCGCCCCGATCGCGGTCTCGGTCTCCCGCACC
AGACCGCCGGGTTCGAATCCCTCCGCCGGCCGTTCGGGCGCCGGGGCTCC
CGCCGCTCCTGCAGCTGCCGCTGCCGACACCGCCAACGCAGGCCGAGAGA
ACGGCGAGAGCTCTGCGGGACGATCGACAGAGGCCGCAAGCGGGGCTGTC
AGCTGCGGCTGGAGAGGAGGAGAGGAGGAGGAGAGCGGGGTTAGCGCTGG
GCACGCCACACCGGCCGCGCCTCTCCGGGCGGGA
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