mRNA_L-elsbetiae_contig760.16512.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig760.16512.1
Unique NamemRNA_L-elsbetiae_contig760.16512.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig760.16512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig760contigL-elsbetiae_contig760:12345..13614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.5548685-CDS-L-elsbetiae_contig760:12344..125421622816844.5548685-CDS-L-elsbetiae_contig760:12344..12542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 12345..12542 +
1691683856.5036259-CDS-L-elsbetiae_contig760:12344..125421691683856.5036259-CDS-L-elsbetiae_contig760:12344..12542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 12345..12542 +
1622816844.5671887-CDS-L-elsbetiae_contig760:13479..136141622816844.5671887-CDS-L-elsbetiae_contig760:13479..13614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 13480..13614 +
1691683856.513244-CDS-L-elsbetiae_contig760:13479..136141691683856.513244-CDS-L-elsbetiae_contig760:13479..13614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 13480..13614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig760.16512.1prot_L-elsbetiae_contig760.16512.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig760 12345..13614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig760.16512.1

>prot_L-elsbetiae_contig760.16512.1 ID=prot_L-elsbetiae_contig760.16512.1|Name=mRNA_L-elsbetiae_contig760.16512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
NGRSGRFEAGSASNGGHAGERGRPPFAAPGDGYGGSSSGGRGEDRRDGGT
TTSFFDGGESRTPEGKVPGPGLGAFPSSGLLPVELPAVLATSSGRYHAAP
RPTNPYATTPS
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mRNA from alignment at L-elsbetiae_contig760:12345..13614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig760.16512.1 ID=mRNA_L-elsbetiae_contig760.16512.1|Name=mRNA_L-elsbetiae_contig760.16512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1270bp|location=Sequence derived from alignment at L-elsbetiae_contig760:12345..13614+ (Laminarionema elsbetiae ELsaHSoW15)
AACGGCAGAAGCGGCCGCTTCGAGGCAGGCAGCGCGAGTAACGGGGGGCA
TGCGGGGGAGCGCGGGCGGCCTCCCTTTGCCGCGCCTGGCGACGGGTACG
GCGGCAGCTCCAGCGGCGGTCGTGGAGAGGATCGGAGAGACGGAGGAACG
ACGACCAGCTTCTTCGATGGAGGAGAGAGCCGGACGCCGGAGGGGAAGGT
CAAGAAGGAGTGTTCTGCGTTGTGCACCGCGCGCACTGGTTTGCTTGCTT
GCTGCCGACTGCCGTATAAAGTATAGTCGCCGTCGTCATTGTCAAGAAGA
TATCAGACGAGTTCCCGGGCACTTTGGCTTGGCCGAACGCCGTCTCGCCT
GGCGCCCGGGAATCTGCCAACGTTGGCAAAAAAACAAACTGCCAACAAGC
TGTTTGACCGGGTACAGCGACCTAGAACCTAACCAATGCACACCAACCTA
GCTTGGGAGGTTGAGTGAGGGTTGGGGTTAGGGGTAGGGTTAAGGGTTGG
GTTAGGCCCAACTAGGTTGAAGGCTGGAAACCCTGCGTTCTTCCTTCCGC
GTGAAAGACGCGGCTACCTTCAAGGACAATGCTGTACCGTTTGTTGCCAG
GGGGGCTCCTTTTTGCCAACAGATGCAGGTTCACGCCCGCCCCATCTCGC
CCGGTCGTTTTTCATTTAATGTGTTTCGCGGAACCACACCAGACGTTCAC
GAGCATCCGTGTAGTAGCCTCTCGTGAACGGCGAAGTAGTTGAAAATAGA
ATGGGCATTGTTTTCATATCACTACATCTCTCACCCGCACGCGCGACCGC
CGATTGCTGCTGAGGGGTGGAGGAACAGACGCGCGGTTTTCGTTTTGTCT
TGAGGGTTTATTTCTGTGCGCCATCCTTGCGGCGGAACAGCGATCCTTTC
CTTGTAGCCGGCTCGCTGACCCCCGGCGGGGGGTGACGCGATCGGTCCGG
AATGGGCGGGGGGATGGCGGAGACTTACGTAGCTTGCCGTCGTGCCGTGT
AGCCCCCCGAAAGTCTCCTTCTCGCGCGACCCCTTCTCGAGCCTCTAAAA
CCGGTGCTTCCGTGGCAGTGATCCTCTCCTCCACCAGCCAAATAAATATC
CAACCGCGCCCTCCATCGCTTGCGCACACGGACAGGTCCCAGGCCCAGGC
CTAGGTGCTTTCCCGTCGTCAGGGCTCCTCCCGGTGGAGTTGCCGGCGGT
ACTAGCCACCTCTTCCGGACGGTATCACGCGGCTCCCCGGCCCACCAATC
CCTACGCAACCACCCCGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig760:12345..13614+

>mRNA_L-elsbetiae_contig760.16512.1 ID=mRNA_L-elsbetiae_contig760.16512.1|Name=mRNA_L-elsbetiae_contig760.16512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig760:12345..13614+ (Laminarionema elsbetiae ELsaHSoW15)
AACGGCAGAAGCGGCCGCTTCGAGGCAGGCAGCGCGAGTAACGGGGGGCA
TGCGGGGGAGCGCGGGCGGCCTCCCTTTGCCGCGCCTGGCGACGGGTACG
GCGGCAGCTCCAGCGGCGGTCGTGGAGAGGATCGGAGAGACGGAGGAACG
ACGACCAGCTTCTTCGATGGAGGAGAGAGCCGGACGCCGGAGGGGAAGAA
CGGCAGAAGCGGCCGCTTCGAGGCAGGCAGCGCGAGTAACGGGGGGCATG
CGGGGGAGCGCGGGCGGCCTCCCTTTGCCGCGCCTGGCGACGGGTACGGC
GGCAGCTCCAGCGGCGGTCGTGGAGAGGATCGGAGAGACGGAGGAACGAC
GACCAGCTTCTTCGATGGAGGAGAGAGCCGGACGCCGGAGGGGAAGGTCC
CAGGCCCAGGCCTAGGTGCTTTCCCGTCGTCAGGGCTCCTCCCGGTGGAG
TTGCCGGCGGTACTAGCCACCTCTTCCGGACGGTATCACGCGGCTCCCCG
GCCCACCAATCCCTACGCAACCACCCCGTCGGTCCCAGGCCCAGGCCTAG
GTGCTTTCCCGTCGTCAGGGCTCCTCCCGGTGGAGTTGCCGGCGGTACTA
GCCACCTCTTCCGGACGGTATCACGCGGCTCCCCGGCCCACCAATCCCTA
CGCAACCACCCCGTCG
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