mRNA_L-elsbetiae_contig7599.16504.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7599.16504.1
Unique NamemRNA_L-elsbetiae_contig7599.16504.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7599.16504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7599contigL-elsbetiae_contig7599:8825..9250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size298
Cds size183
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7599.16504.1prot_L-elsbetiae_contig7599.16504.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7599 8825..9136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.672298-CDS-L-elsbetiae_contig7599:8824..88821622816843.672298-CDS-L-elsbetiae_contig7599:8824..8882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7599 8825..8882 +
1691683855.8728023-CDS-L-elsbetiae_contig7599:8824..88821691683855.8728023-CDS-L-elsbetiae_contig7599:8824..8882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7599 8825..8882 +
1622816843.685339-CDS-L-elsbetiae_contig7599:9011..91361622816843.685339-CDS-L-elsbetiae_contig7599:9011..9136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7599 9012..9136 +
1691683855.8866715-CDS-L-elsbetiae_contig7599:9011..91361691683855.8866715-CDS-L-elsbetiae_contig7599:9011..9136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7599 9012..9136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.69604-UTR-L-elsbetiae_contig7599:9136..92501622816843.69604-UTR-L-elsbetiae_contig7599:9136..9250Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7599 9137..9250 +
1691683855.8998857-UTR-L-elsbetiae_contig7599:9136..92501691683855.8998857-UTR-L-elsbetiae_contig7599:9136..9250Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7599 9137..9250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7599.16504.1

>prot_L-elsbetiae_contig7599.16504.1 ID=prot_L-elsbetiae_contig7599.16504.1|Name=mRNA_L-elsbetiae_contig7599.16504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
RRPGFVAALLSPLSWDLVLILPRSSLSSRRVFDAFLSRTVVTVSHPWRLF
SLLCRATQCL*
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mRNA from alignment at L-elsbetiae_contig7599:8825..9250+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7599.16504.1 ID=mRNA_L-elsbetiae_contig7599.16504.1|Name=mRNA_L-elsbetiae_contig7599.16504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig7599:8825..9250+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCGACCGGGCTTTGTGGCGGCTCTTCTCTCTCCATTGTCGTGGGATCT
GGTGCTAAGTACTACCCCGTAGTAGTTTGTCGAACCGGAGTGTGATGCGT
TTCTGTCACACGTATGGTGGTTGTAAGAGTCTCCCGCCCGTGGCGGCTGT
TCTCTCTCCATCCATTGTCGTAGGATCTGGTGCTAAGTACTACCCCGTAG
TAGTTTGTCGAGCCGGAGGGTGTTTGATGCCTTTCTGTCACGTACTGTTG
TAACCGTCTCCCACCCGTGGCGGCTCTTCTCTCTCCTTTGTCGTGCGACG
CAGTGCTTGTAGCGGTAGTTGTCGAGCCGGAGTGTGGTGCATTTCTGTCA
CGTGCGGTAGAAGTCTCCCACCTTGATTCCGATTGCTGTTTTTTGTCGGT
GGATGTTGTCGTGGATTGCGCAGAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7599:8825..9250+

>mRNA_L-elsbetiae_contig7599.16504.1 ID=mRNA_L-elsbetiae_contig7599.16504.1|Name=mRNA_L-elsbetiae_contig7599.16504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig7599:8825..9250+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCGACCGGGCTTTGTGGCGGCTCTTCTCTCTCCATTGTCGTGGGATCT
GGTGCTAACGCCGACCGGGCTTTGTGGCGGCTCTTCTCTCTCCATTGTCG
TGGGATCTGGTGCTAATACTACCCCGTAGTAGTTTGTCGAGCCGGAGGGT
GTTTGATGCCTTTCTGTCACGTACTGTTGTAACCGTCTCCCACCCGTGGC
GGCTCTTCTCTCTCCTTTGTCGTGCGACGCAGTGCTTGTAGTACTACCCC
GTAGTAGTTTGTCGAGCCGGAGGGTGTTTGATGCCTTTCTGTCACGTACT
GTTGTAACCGTCTCCCACCCGTGGCGGCTCTTCTCTCTCCTTTGTCGTGC
GACGCAGTGCTTGTAG
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