mRNA_L-elsbetiae_contig759.16500.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig759.16500.1 vs. uniprot
Match: A0A6H5JG23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG23_9PHAE) HSP 1 Score: 346 bits (887), Expect = 2.350e-93 Identity = 520/1561 (33.31%), Postives = 647/1561 (41.45%), Query Frame = 1
Query: 175 TPPSNTAGRG--KFPPEKRLGSGIVPDGRQDSSKAAK-RFFVRPKVGSERDDTTNKFL-----------------SETSETAKNILSGTTEVVVATLVNTGPANTFLTPLHNWSRSRKRVAEAVEAAATAAPSEARSAXXXXXXXXXXQRALFEEQEEVRTNNPWLGLLRDTFPLPQPVKNTYSALVSVAAVPGQLLQTGKQTAEALTVAAETAGAMPD-------RVRETVARGQATARTAQEVLAEAPGRVQEVVTATREFPGKMGRVVEEGTEAVEAAVEAGRKAADAVETLPSRLPDLIETVGDDAL----SLAEGTAAGADAAGTALWGLTKEVAAWAADLVLRQALTPVHEYRTSTRRVQAALDEELAALPQASLPPRS--SAEKAPSNPTALVTAGTTPPVAGDSAALGEDTTPDIGDSM----------------------------PMSRLVGLRGRFLSWRRKRKSIPAVAVADEDDDEE---GDVVENVAVDSKEI-----SAVAAAVSKPAISQEARAETASAAAQAESTIAARRSEEAEVGAAAKTLIAENVLVTDGQVVTGEVLLPVAASVTVGG---------------ADEASSKENIYVAPVGALAISVASEDRG------AVESAAVPVAARPLGEAADFEDEGKETAADADKRPVARA-TPADLSDDLDLD-QRTAALAGDDESLAGKI--EIASERGESQTASASSFAGSSPFSGASSDTGERALADAEQAGGASVGGKGVDYTSSGEQ-----MGSPSSSTVAAIAPSKEVAASAATPRVDTGSDYKNALLGGPNVDTLTKNYRPSPVVNSVESTAAAAVNDAEETVTSTLPSAVGSTARKQETAEAAPLETGERPGPAVSSA--SPSSPVP-TGTALSPAGSPSRHRVSRKKEGRGSPAAQE----RFEAPTKAAERE-GPADDAGATVSSEKPPVVPSEAASDEVAETAAAGQAVPRGAGKAGIVGGGSGTLEVPSSPSSAVNPAAEFLRDWVVKAVPQKKAELKRKESAVCWERQWYPVATVLELLQ--------QHXXXXXXXXXRFQMLDRAYELAPIPREGRRRSP---DFRGWGCRAI-ADDEVSDPER-TRSSVGPAAAVAAARVPLRESNGLLWAWPDTSPEGLAAAELAGP----AALPDFLGIGGTLGRAPGVWRR-LLRRQIAPQRAPESTDEHGGGGHEAERKKRGNQR---------------HALFVEREISCGFSDAVRGLVTASHGQAVRALTAGGNGDVNAPKDDDLLVDASPAGGDESSSGVLRAAFDTSSARGEVLFSSPTVVEWRFSP---------------------AWAVQEESATTAATTGEG--------AVTATSSRQRSWLRRRLSGLGGGGRGSGGVVGRRSRVSRSAAGSDQRDTRALEGGVRQVAAAHYVASLLPVGPNRTKVFARLEVEPSG--LLGGRSLWWSRRIRRGLLVAALDEVASC---RSAA--------------------------------TGGGNGGRLLSSVAEAWLEGAAEGGPF 4239
TP TAGRG K P ++R + PDG +D+ +A + FVRPKV N S+T TA I+S TTEVVVAT+ +TG AN LTPLH WS SRKRVAEAVEA XXXXXXXXXX NPW+ LR LPQPVK TYS +VAAVPGQL ++G+Q A +L+ A E R R + TARTA+E + E PGRV+E+V AT+ ETLPSRLP LIET DDAL LAEGTA G DAAGTALW +TKE+ WAAD VLR LTPVHEY S RRVQ ALD+E A+ RS SAE+A P A ++ L P+SRL GLR RF SWR +++SI AVAVA N ++E+ V+ V P E+R TA A IAA RS+ A A SKE ++ GA A + A D A + V + RP+ E E +E AD+ R + A S L L +A LA ++A + + S+ G ASA G S G + +G +A GEQ G+ + S ++ I+ S V A V TG+ L T + SP + AAA AEE VT+T V + A P G P V S P S +P T L+ +G+ EGRGS A++ R +A T RE P+ + A+ P VP S+ AAA +A + V PA EFL+DWV AVP+KK ELKR+E AVCWERQWYPVA V +L Q + RF+ML R YEL +P EG P + R W CR++ A D E+ +RSS AA VP+RES+GLLWAWPD SPEGL AA LA P A L D GG +P WRR LLRR A E G G A +KRG + VE ++ CG+S+AV GL+ +HG+AV AGG G +E++ A GEV+F+ PTVV WRF P A A +++ ++ GE AV+ TS R WLRRRLSG G+++R GG + YVA LLPVGP TKVFARLEVEPSG LL G SL SRR+RRG L A+D+ A+ RSAA +GG G RL S E W+ GA GGPF
Sbjct: 45 TPLKATAGRGGSKVPRKERTSA---PDGSKDTREAWRWGGFVRPKVYPASKQNKNXXXXXXXXXXXXXXDIGTAGSDTG-TAMAIVSQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEAXXXX--------XXXXXXXXXXXXXXXXXXXXXXXTNPWVAHLRVV--LPQPVKKTYS---TVAAVPGQLAKSGEQAAASLSAAKENLAXXXXXXXXXXXRARGATMQALETARTAREAITEVPGRVEELVKATQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETLPSRLPSLIETTTDDALVLAGDLAEGTALGLDAAGTALWEVTKELGGWAADFVLRPVLTPVHEYHMSARRVQDALDDERVVALNAAGKSRSLSSAEEA----------NVGVPEAATNSILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRTPVSRLAGLRRRFSSWRCRKRSIVAVAVAXXXXXXXXVGSSQSSNATTGTREVVHDPTPTVSETVVVPV---ESRGRTAPVAGL---EIAAGRSDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVVPSKEAAPLSEPGATASAPALGDEKLTRPLLAEDDGLVSLEPRPVAAVGPLEQEEEEQEGGADRGGACRGNSTAIASGTLGLKPDGSATLAAAATTVAAVLAEDGLSQAGNVAGASAGRARGGSKQEGDDNGSGHKA----------------------GEQDPPAIEGTATPSGLSRISASTAVVAPXXXXXVGTGAAXXXTKLAA------TSSTAASPAADLAGDAAAAEALAAEE-VTATFEVDVDAAP------SAPPTTAGPTPLSRVRSTHGEPGSDLPNTAPPLAVSGA-----AQEDGEGRGSSVAKQNDKPRADAATDGKSREKAPSAEPTASALKTSPEQVPP---SEGDTNPAAAAEAXXXXXXXXXXX-XXXXXXXXXXXXAWGVQPAVEFLKDWVEAAVPRKKEELKRREDAVCWERQWYPVAVVSDLRQLLLRRLRRRRWRGGDGRSVRFEMLGREYEL--LPPEGGADKPTSLETRAWRCRSVVALGGGPDEEKPSRSST----VAAAEEVPVRESSGLLWAWPDISPEGLEAAALASPSCSAAGLDDDYCGGGDETASP--WRRVLLRRHTAV--------EGGYGDGPAREEKRGGSXXXXXXXXXXXXXXXXEVVVVEHDVPCGYSEAVGGLLDPAHGEAVMGAAAGGG-----------------EGREEAA------------AWGEVVFAPPTVVGWRFEPTPXXXXXXXEAAGRSEETSIPASADRDQPSSPPVPDGESPVVMKEKEAVSNTSPGLR-WLRRRLSG---------------------GLGAEERRPGVGVGG----GSVRYVAVLLPVGPEHTKVFARLEVEPSGRRLLDGLSLG-SRRLRRGTLAKAIDDAAAAAVRRSAAGEQAQADAGRGAKISTTHGGGESGESVSGRSSSGGKGGARLTSPAVEEWVRGAGNGGPF 1456
BLAST of mRNA_L-elsbetiae_contig759.16500.1 vs. uniprot
Match: D7FH24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH24_ECTSI) HSP 1 Score: 306 bits (783), Expect = 7.580e-81 Identity = 475/1461 (32.51%), Postives = 585/1461 (40.04%), Query Frame = 1
Query: 367 ILSGTTEVVVATLVNTGPANTFLTPLHNWSRSRKRVAEAVEAAATAAPSEARSAXXXXXXXXXXQRALFEEQEEVRTNNPWLGLLRDTFPLPQPVKNTYSALVSVAAVPGQLLQTGKQTAEALTVA-------AETAGAMPDRVRETVARGQATARTAQEVLAEAPGRVQEVVTATREFPGKMGRVVEEGTEAVEAAVEAGRKAADAVETLPSRLPDLIETVGDDAL----SLAEGTAAGADAAGTALWGLTKEVAAWAADLVLRQALTPVHEYRTSTRRVQAALDEELAALPQASLPPRS--SAEKAP-SNPTALVTAGTTPPVAGDSAALGEDTTPDIGDSM------------------PMSRLVGLRGRFLSWRRKRKSIPAVAVADEDDDEEGDVVENVAVDSKEISAVAAAV--SKPAISQEARAETAS---AAAQAESTIAARRSEEAEVGAAAKTLIAENVLVTDGQVVTGEVLLPVAASVTVGGADEASSKENIYVAPVGALAISVASEDRGAVESAAVPVAARPLGEAADFEDEGKETAADADKRPVARATPADLSDDLDLDQRTAALAGDDESLAGKIEIASER----GESQTASASSFAGSSPFSGASSDTGERALADAEQAG---GASVG-GKGV-----DYTSSGEQMGSPSSSTVAAIA-PSKEVAASAATPRVDTGSDYKNALLGGPNVDTLTKNYRPSPVVNSVESTAAAAVNDAE----------ETVTSTLPSAV-GSTARKQETAEAAPLETGERPGPAVSSASPSSPVPTGTALSPAGSPSRHRVSRKKEGRGSPAAQE----RFEAPTKAAERE-----GPADDAGATVSSEKPPVVPSEAASDEVAETAAAGQAVPRGAGKAGIVGGGSGTLEVPSSPSSAVNPAAEFLRDWVVKAVPQKKAELKRKESAVCWERQWYPVATVLELLQ-----QHXXXXXXXXXRFQMLDRAYELAPIPREGRRRSP---DFRGWGCRAI-ADDEVSDPER-TRSSVGPAAAVAAARVPLRESNGLLWAWPDTSPEGLAAAELAGPAALPDFLGIGGTLGRAPGVWRRLLRRQIAPQRAPESTDEHGGGGHEAERKKRGNQR-------HALFVEREISCGFSDAVRGLVTASHGQAVRALTAGGNGDVNAPKDDDLLVDASPAGGDESS---SGVLRAAFDTSSARGEVLFSSPTVVEWRF------------------------SPAWAVQEESATTAATTGEG--------AVTATSSRQRSWLRRRLSG----------LGGGGRGSGGVVGRRSRVSRSAAGSDQRDTRALEGGVRQVAAAHYVASLLPVGPNRTKVFARLEVEPSG--LLGGRSLWWSRRIRRGLLVAALDEVASC---RSAA--------------------------------TGGGNGGRLLSSVAEAWLEGAAEGGPF 4239
I+S TTEVVVAT+ +TG AN LTPLH WS SRKRVAEAVEA XXXXXXXXXX NPW+ LLR LPQPVK TY +VAAVPGQL ++G+Q A +L+ A AE P R R + T R +E+V A ETLPSRLP LIET DDAL LAEGTA G DAAGTALW +TKE+ WAAD VLR LTPVHEYRTSTRRVQ ALDEE A+ RS SAE+A P ++G + P+SRL GLRGRF SWRR+++SI AVAVA DE+GD + S + AV P +S+ A S AA A IAA RS+ A E + T V P V VGG + + +E+ + VG +VA A +S A+ P EDE + R A+ + L+ R A G E + + E ++R G TA AS G P A++ A +AG GAS G +G D SG + G + A PS SA+T V + S AAA AE + S+ P+A G T + A + P E+G S P++ P A+S AG R EGRGS A+ R +A T RE GP A T ++PP S AAA + V PA EFL+ WV AVP+KK ELKR+E AVCWERQWYPVA +L + + RF+ML R YEL +P +G P + R W CR+I A D+ D E+ +RSS AA VP+RES+GLLWAWPDTSP+GL AA LA PA+ + VE ++ CG+S+AV GL+ +HG+AV A +GV RAA + +GEV+F+ PT V WRF +PA A +++ GE A R R WLRRRLSG +GGGGRGS YV LLPVGP RTKVFARLEV P G LL G SL SRR RRG L A+D+ A+ RSAA +GG G RL S E W+ GA GGPF
Sbjct: 3 IVSQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEAXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXNPWVALLRAA--LPQPVKKTYR---TVAAVPGQLAKSGEQAAASLSAAKDNLAAAAEVXXXAPGRARGAATQALETTRXXXXXXXXXXXXXEELVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAETLPSRLPGLIETTTDDALVLAGDLAEGTALGLDAAGTALWEVTKELGGWAADSVLRPVLTPVHEYRTSTRRVQDALDEERVVALNAAGKKRSLSSAEEANVGGPEXXXXXXXXXXXXXXXXXXXXXXLGEVGSAAXXXXXXXXXXXXXSDRRTPVSRLAGLRGRFSSWRRRKRSIVAVAVAF---DEDGDNTAGSSQGSNATTGTREAVLDPTPTVSETVLARVESRGRAAPVAGLEIAAGRSDAAXXXXXXXXXX-EEAMATSTAPVRTVTDPPDTGGVGVGGRQQPTLEESSTQSSVGGATAAVAPSKEAAPQSEPGAPASAPA-----LEDE-----------KLTRPPLAEDGGPVSLEPRPVADTGPLEQVEEEPEGGADRRAAGGGISTAIASGTLGLKPEGSATAAAAVLADDGLMRAGVVAGASAGRARGDPKQMGDDNGSGHKAGEQDPPAIEGTATPSGLSRTSASTAVVAPXXXXXXXXXXXXXXKLAXXXXXXXXPAAGLTSDAAAEALAAEXXXXXXXXDLDAAPSSAPTATAGPTPLPR--ARSTPRESG--------SDLPNTAPPQ--AVSGAGQEDR-------EGRGSGVAKRNDKPRADAATGDESRENAPSVGPTASALKTSPEQQPP-------SKADTNPAAAXXXXXXXXXAGEXXXXXXXXXXXXXXXAWGVQPAVEFLKGWVEAAVPRKKEELKRREDAVCWERQWYPVAFASDLRRLRRRRRRWRGGDGRSVRFEMLGREYEL--LPPDGVADKPTSLETRAWRCRSIVAPDDGPDEEKPSRSST----VAAAEEVPVRESSGLLWAWPDTSPKGLEAAALASPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEVVVVEHDVPCGYSEAVGGLLDPAHGEAVMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFRAASGSPRGQGEVVFAPPTFVGWRFEPTPXXXXXXXXXXXXXXXXXXASTPASADRDQXXXXXVPDGESPEVIKEKEAAWNAPPRGR-WLRRRLSGGLGAEERRPGVGGGGRGS----------------------------------VRYVVVLLPVGPERTKVFARLEVAPPGRRLLDGLSLG-SRRGRRGTLAKAIDDAAAAAVRRSAAGDQAQADAGRGAKSSTTHGGGESGESVSGRSSSGGKGGARLTSPAVEEWVRGAGNGGPF 1363
BLAST of mRNA_L-elsbetiae_contig759.16500.1 vs. uniprot
Match: A0A6H5JDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP5_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.530e-32 Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = -2
Query: 5980 KAATGFAQSSVNRAGFAVAHSVANGVLKGAEAAADWAGDGALAREYVMLFIAAFCLVFKRGVGAAVALLVVIRFGRTIAQRLVSEGWKLERQKR 6261
+AATG+AQSSVNRAGFAV S+ANG+L+GAEAAADWAGDGALAREYV+LFIAAFCLVFKRGVGAAVALLVVIRFGR AQ+LV EGWK+ER KR
Sbjct: 733 RAATGYAQSSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALAREYVLLFIAAFCLVFKRGVGAAVALLVVIRFGRIAAQKLVLEGWKMERAKR 826
BLAST of mRNA_L-elsbetiae_contig759.16500.1 vs. uniprot
Match: D7FH23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH23_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 1.930e-13 Identity = 86/208 (41.35%), Postives = 103/208 (49.52%), Query Frame = -2
Query: 5680 KAATGFAQSSVNRAGFAVAHSVANGVLKGAEAAADWAGDGALAREYVMLFIAAFCLVFKRGVGAAVALLVVIRFGRTIAQRLVSEGWKLERQKRARARESGGVAA-----AAAGD-ATTYRRDNPSVSYPAGAAASDGR--------PRRGKAAETAKAQEERRPRVRKSAKKAQRNPAXXXXXXXXXXRKPLWDSESEDDGGGCVVM 6261
+AATG+AQSSVNRAGFAV S+ANG+L+GAEAAADWAGDGALARE FGR AQ+LV EGWK+ER KR A GD AT RRD AAA GR K +++ + R SA++ ++ PA RKPLW+ ES+DD GCVVM
Sbjct: 786 RAATGYAQSSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALARE----------------------------FGRIAAQKLVLEGWKMERAKRRXXXXXXXXXXXXXXXAVDGDGATGSRRDTSGY-----AAAPAGRRXXXXXXXXXXXXXXXXXKGASKKKGKERGSARRTKK-PA----------RKPLWE-ESDDDDRGCVVM 948 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig759.16500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig759.16500.1 >prot_L-elsbetiae_contig759.16500.1 ID=prot_L-elsbetiae_contig759.16500.1|Name=mRNA_L-elsbetiae_contig759.16500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1383bp MWLLVPLLILPTCTGLKFHLPLLQRRDTPPSNTAGRGKFPPEKRLGSGIVback to top mRNA from alignment at L-elsbetiae_contig759:20992..29446+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig759.16500.1 ID=mRNA_L-elsbetiae_contig759.16500.1|Name=mRNA_L-elsbetiae_contig759.16500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8455bp|location=Sequence derived from alignment at L-elsbetiae_contig759:20992..29446+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig759:20992..29446+ >mRNA_L-elsbetiae_contig759.16500.1 ID=mRNA_L-elsbetiae_contig759.16500.1|Name=mRNA_L-elsbetiae_contig759.16500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8298bp|location=Sequence derived from alignment at L-elsbetiae_contig759:20992..29446+ (Laminarionema elsbetiae ELsaHSoW15)back to top |