mRNA_L-elsbetiae_contig758.16482.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig758.16482.1
Unique NamemRNA_L-elsbetiae_contig758.16482.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig758.16482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig758contigL-elsbetiae_contig758:4117..5248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.7721856-CDS-L-elsbetiae_contig758:4116..42291622816841.7721856-CDS-L-elsbetiae_contig758:4116..4229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig758 4117..4229 +
1691683854.4554188-CDS-L-elsbetiae_contig758:4116..42291691683854.4554188-CDS-L-elsbetiae_contig758:4116..4229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig758 4117..4229 +
1622816841.7848938-CDS-L-elsbetiae_contig758:5080..52461622816841.7848938-CDS-L-elsbetiae_contig758:5080..5246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig758 5081..5246 +
1691683854.4687452-CDS-L-elsbetiae_contig758:5080..52461691683854.4687452-CDS-L-elsbetiae_contig758:5080..5246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig758 5081..5246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig758.16482.1prot_L-elsbetiae_contig758.16482.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig758 4117..5246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig758.16482.1

>prot_L-elsbetiae_contig758.16482.1 ID=prot_L-elsbetiae_contig758.16482.1|Name=mRNA_L-elsbetiae_contig758.16482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
RLGWRDFDVGKERGQAEIMTVPELMVLFVLASTCVNHSGSGGLFSVRGSS
VCPPAAWPRHPKSRRTLFFFLRFFCFVHEGCISRRPSKVATTG
back to top

mRNA from alignment at L-elsbetiae_contig758:4117..5248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig758.16482.1 ID=mRNA_L-elsbetiae_contig758.16482.1|Name=mRNA_L-elsbetiae_contig758.16482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1132bp|location=Sequence derived from alignment at L-elsbetiae_contig758:4117..5248+ (Laminarionema elsbetiae ELsaHSoW15)
CGACTCGGCTGGCGAGACTTTGACGTGGGAAAGGAGCGGGGGCAAGCTGA
AATCATGACAGTGCCTGAACTGATGGTGTTGTTTGTTTTGGCGTCAACTT
GCGTCAACCACAGGTGCCTGCTACTACTACTGTGTCCCGGACACATCTTA
TTCCAAACTGCCGTTGTTTGATCTTTGCGGTGACCTAGTTGAGCCACTTT
TAACACCGATACCCAAGCACAGAGAGTGTGTAGAGAGATAGGTGCTTTAC
TATCTCTGCCGTGCCACCAGCACAAGACTTTGACCCAGCAGCACTTCGGA
CCGCCGCAAGACCTTCCTCTGATGTGTGATATGTTCAGTGGGCAGCAGGG
CAGTGGGCAGCACACCGAACACCGAACCGCACGGTGTTGCTTCGACGAAC
TCACACCAGAGACGCCACTACAATTGCAGTAAGCAGTGAGATAGGCCCGG
TGTAACTCTGTCGCTCTGACTCGTTCACTGAGCAATGGGCAAACACAGCA
ACAGTTGTAAGGGGATTCGGTCAACATTGAACAGAGCTGACAGTCCCGCC
GTTCATGATGTTTTCGAGGACTTACTCTATCTAAATCTGCAATCGCTGAG
GCAAACTCTTAGATCGTGATCTTGCCCCTTTTGCGAGCTATGAGCCTACT
ATACAGCCTCCTAACATTGATACTGCGAGGTGAATCGCGCATTTTGCTCC
GTTGTCACTCTGTTTGTGTGTACCTACATCACTAAGCGAGTGTGACATAC
CCTGTTTGTGTACCTGCATAGATAGCCTAGATACAGCTTCCAACAATAGA
CTAGGCGAGCCAAACCCGTCTCGTAATCACTACTACTGAACCACTCCTAC
TGATTAGAGTCTAGGAGTCGAAGTTGCGTTTGGGACCTGAACTACTCTCC
GCATTCCGATTTGTGCCTGCTTTGAATTAACTCTGCCTCCCTCAACCGTC
CAACCAACAAACAGTGGCAGCGGCGGCCTTTTCTCCGTGCGGGGGTCGAG
CGTTTGTCCCCCCGCCGCTTGGCCGAGGCACCCGAAGTCCCGCCGCACCC
TCTTCTTCTTTCTCCGCTTCTTCTGCTTCGTCCATGAAGGGTGTATTTCA
CGGCGACCCTCGAAGGTGGCAACAACGGGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig758:4117..5248+

>mRNA_L-elsbetiae_contig758.16482.1 ID=mRNA_L-elsbetiae_contig758.16482.1|Name=mRNA_L-elsbetiae_contig758.16482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig758:4117..5248+ (Laminarionema elsbetiae ELsaHSoW15)
CGACTCGGCTGGCGAGACTTTGACGTGGGAAAGGAGCGGGGGCAAGCTGA
AATCATGACAGTGCCTGAACTGATGGTGTTGTTTGTTTTGGCGTCAACTT
GCGTCAACCACAGCGACTCGGCTGGCGAGACTTTGACGTGGGAAAGGAGC
GGGGGCAAGCTGAAATCATGACAGTGCCTGAACTGATGGTGTTGTTTGTT
TTGGCGTCAACTTGCGTCAACCACAGTGGCAGCGGCGGCCTTTTCTCCGT
GCGGGGGTCGAGCGTTTGTCCCCCCGCCGCTTGGCCGAGGCACCCGAAGT
CCCGCCGCACCCTCTTCTTCTTTCTCCGCTTCTTCTGCTTCGTCCATGAA
GGGTGTATTTCACGGCGACCCTCGAAGGTGGCAACAACGGGGTGGCAGCG
GCGGCCTTTTCTCCGTGCGGGGGTCGAGCGTTTGTCCCCCCGCCGCTTGG
CCGAGGCACCCGAAGTCCCGCCGCACCCTCTTCTTCTTTCTCCGCTTCTT
CTGCTTCGTCCATGAAGGGTGTATTTCACGGCGACCCTCGAAGGTGGCAA
CAACGGGG
back to top