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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 983 |
| Cds size | 822 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816840.2326794-CDS-L-elsbetiae_contig7562:4885..5283 | 1622816840.2326794-CDS-L-elsbetiae_contig7562:4885..5283 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7562 4886..5283 - |
| 1691683853.4489167-CDS-L-elsbetiae_contig7562:4885..5283 | 1691683853.4489167-CDS-L-elsbetiae_contig7562:4885..5283 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7562 4886..5283 - |
| 1622816840.2445662-CDS-L-elsbetiae_contig7562:5525..5721 | 1622816840.2445662-CDS-L-elsbetiae_contig7562:5525..5721 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7562 5526..5721 - |
| 1691683853.460665-CDS-L-elsbetiae_contig7562:5525..5721 | 1691683853.460665-CDS-L-elsbetiae_contig7562:5525..5721 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7562 5526..5721 - |
| 1622816840.2585757-CDS-L-elsbetiae_contig7562:6697..6925 | 1622816840.2585757-CDS-L-elsbetiae_contig7562:6697..6925 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7562 6698..6925 - |
| 1691683853.4710093-CDS-L-elsbetiae_contig7562:6697..6925 | 1691683853.4710093-CDS-L-elsbetiae_contig7562:6697..6925 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7562 6698..6925 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816840.2692373-UTR-L-elsbetiae_contig7562:6925..7085 | 1622816840.2692373-UTR-L-elsbetiae_contig7562:6925..7085 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7562 6926..7085 - |
| 1691683853.4819477-UTR-L-elsbetiae_contig7562:6925..7085 | 1691683853.4819477-UTR-L-elsbetiae_contig7562:6925..7085 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7562 6926..7085 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7562.16462.1 >prot_L-elsbetiae_contig7562.16462.1 ID=prot_L-elsbetiae_contig7562.16462.1|Name=mRNA_L-elsbetiae_contig7562.16462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=274bp
MSALEAAAAPAANSTNSTNRLSVEGAGGCSTPTEEASDAAESRLAKDESK
DSGDPMATAGGHGNDSNAEGASDAGKKAEGDKVEVSKAEEVAAAELETQP
GREAHTSKKRPREEQSKQGTGGAAAVTAAASTAAEAAAGCSEREPGEPKG
APSRVKVPTSQRGGSAAQPEVPKPLEDPGVHEVVSQNLATQEIKRVRRKM
NDRGPPPMPPSASPGRQATVGGGGEMVATGERNSGRAAGAAEIAERANGA
PPAEHRARVDGPRSADGERRKQSE back to topmRNA from alignment at L-elsbetiae_contig7562:4886..7085- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7562.16462.1 ID=mRNA_L-elsbetiae_contig7562.16462.1|Name=mRNA_L-elsbetiae_contig7562.16462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2200bp|location=Sequence derived from alignment at L-elsbetiae_contig7562:4886..7085- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGTGACGTACCACTTGCAGAGCTTAATGGAGTGAGTGGTTTTCTC
AGGAAGAAGCAGCTCTTTTCGGGTTGAATCGAAGACGAGGGCATATTTTT
CTGCATTTTTCAAACGCCTGGAGTTCGCGTCTGTACGCCTACTGCAGCAG
ACATACAACGATGTCGGCCCTAGAGGCGGCCGCTGCTCCCGCTGCTAACA
GCACCAACAGCACCAACAGACTATCAGTAGAAGGGGCGGGGGGCTGCTCA
ACACCAACAGAAGAAGCGAGCGATGCTGCAGAGAGTCGGCTGGCGAAGGA
CGAATCGAAGGACAGCGGGGACCCCATGGCAACGGCGGGCGGGCATGGCA
ACGACTCGAACGCGGAAGGCGCGAGCGACGCCGGGAAGGTATGGCCGGGG
TATTTCCAGGTAGCACGCGTCGTCGTTGTTGGTGTGATCACCCATGCCTT
TCTCCGGTCTCCGGAGCTGTAAAAAAATTTGCGAAGAATTGCGCGGGGCA
AACAAAAACCTGGGCCGAAAGGCCCATCCACCAACACACCTGTGGACCAC
CTTCTTGTGGTGAATCTACATGTACTACCTACCCGGCTGCTTACTAAGCC
GGCATTTCGCAGGAGGTGCCTTTCTTTTCGCAACAAGAAGTTTACGTGCA
CCTTATCATCGCCGCAGCAATGCGATGAATGCACCTCACCTCTCGCCCTT
TTTGAATGTCCACTCTCCCCCTCTTTATTTCCACTGCGCCAGGAGGTTGA
TTCACTGGAACGACGTAAGTACATACATCCAGGGACAGAGTAGGACTTGT
AGGAGTGAGTTGAAAGATTCCGCAAGGTTTTTGCGCGTTGTACTGCTATA
TGGACGTGGGAAAATGCGCGTGGACTGCATGCGTGAAAATCCGGCTGCCA
CACCTGTTCATGGAATGCCGCGCAAAGCACCGGCGTCTTGCGGCGGCCGT
GTCCATAAATGCGGTAAATCTGTCACAAGTACACAATGTATGTACCCCAC
CCTTGTAGGTATACGCGCACCCATCGCTGCATAACTTATCCATTATCCAC
ACACGCCATTTAGATCTTTACACCCGTTCGATCAGACAATTCTAGGATGC
GCATCTCTTTTTCCTGCCGTTTCTTCTTGTTGGCGGATGATCTCCTGCAC
TTTAGCGTGCTCTACGCGCCGCTCACCCCAAGTTTCCTCCCCCATCTTCG
CACCGGCCTCGTCACGGACGGTACATATGTACATGTACATATGTTTGAAT
CCATCGTGACCAAAAGCCTCCAAACCAATCACATGGGATGTCATGCTTCC
TTCCCCTTCACAAACATGGGCTAACAATTCCCTCTCCGTCGCTTTGTCGT
CTGCGGAAACACAGAAAGCAGAAGGAGACAAGGTGGAGGTTTCGAAGGCA
GAAGAAGTAGCAGCCGCGGAGCTGGAGACGCAGCCGGGGCGTGAAGCCCA
CACCTCGAAGAAGCGTCCCCGGGAAGAGCAATCCAAACAAGGCACGGGCG
GCGCGGCAGCGGTGACGGCAGCAGCATCAACGGCAGCAGAGGCGGCAGCG
GGGTGTTCAGGTGCGTCGTTTGGTCTCGGTGTGCATACGGATGTATGTAC
GTCTCCCTGGGTTCTGGGGCAAGGCACACGTACGCTGCATTTGTAGACGG
GTGTATGCATGGACACACACACACACACACACACACACACACCCGTAGCG
CGGCGCACACGTTCTCCACACGGCGGTTGACCCTCTGCATATCACTCCGG
CGCTGCTGATTTCGCTCCCCGCAAATGAACTTTTCGATGCGCGATACAGC
AGAGAGAGAACCCGGCGAGCCAAAGGGGGCCCCGAGCCGCGTCAAAGTAC
CGACTAGCCAGCGAGGGGGATCCGCAGCACAACCGGAAGTACCCAAGCCG
CTGGAGGACCCCGGCGTGCACGAGGTGGTGTCGCAAAACCTAGCGACCCA
AGAAATCAAGCGCGTTCGAAGGAAGATGAACGACCGGGGCCCCCCGCCGA
TGCCGCCATCGGCCTCTCCTGGCCGGCAGGCAACGGTGGGCGGCGGAGGG
GAGATGGTGGCAACGGGGGAAAGAAACAGCGGTAGAGCCGCCGGCGCTGC
TGAAATAGCGGAGCGGGCGAACGGCGCGCCCCCCGCAGAGCACCGGGCAC
GGGTGGACGGGCCCCGGTCGGCGGATGGGGAACGAAGGAAGCAATCAGAG
back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7562:4886..7085- >mRNA_L-elsbetiae_contig7562.16462.1 ID=mRNA_L-elsbetiae_contig7562.16462.1|Name=mRNA_L-elsbetiae_contig7562.16462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1644bp|location=Sequence derived from alignment at L-elsbetiae_contig7562:4886..7085- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCCCTAGAGGCGGCCGCTGCTCCCGCTGCTAACAGCACCAACAG
CACCAACAGACTATCAGTAGAAGGGGCGGGGGGCTGCTCAACACCAACAG
AAGAAGCGAGCGATGCTGCAGAGAGTCGGCTGGCGAAGGACGAATCGAAG
GACAGCGGGGACCCCATGGCAACGGCGGGCGGGCATGGCAACGACTCGAA
CGCGGAAGGCGCGAGCGACGCCGGGAAGATGTCGGCCCTAGAGGCGGCCG
CTGCTCCCGCTGCTAACAGCACCAACAGCACCAACAGACTATCAGTAGAA
GGGGCGGGGGGCTGCTCAACACCAACAGAAGAAGCGAGCGATGCTGCAGA
GAGTCGGCTGGCGAAGGACGAATCGAAGGACAGCGGGGACCCCATGGCAA
CGGCGGGCGGGCATGGCAACGACTCGAACGCGGAAGGCGCGAGCGACGCC
GGGAAGAAAGCAGAAGGAGACAAGGTGGAGGTTTCGAAGGCAGAAGAAGT
AGCAGCCGCGGAGCTGGAGACGCAGCCGGGGCGTGAAGCCCACACCTCGA
AGAAGCGTCCCCGGGAAGAGCAATCCAAACAAGGCACGGGCGGCGCGGCA
GCGGTGACGGCAGCAGCATCAACGGCAGCAGAGGCGGCAGCGGGGTGTTC
AGAAAGCAGAAGGAGACAAGGTGGAGGTTTCGAAGGCAGAAGAAGTAGCA
GCCGCGGAGCTGGAGACGCAGCCGGGGCGTGAAGCCCACACCTCGAAGAA
GCGTCCCCGGGAAGAGCAATCCAAACAAGGCACGGGCGGCGCGGCAGCGG
TGACGGCAGCAGCATCAACGGCAGCAGAGGCGGCAGCGGGGTGTTCAGAG
AGAGAACCCGGCGAGCCAAAGGGGGCCCCGAGCCGCGTCAAAGTACCGAC
TAGCCAGCGAGGGGGATCCGCAGCACAACCGGAAGTACCCAAGCCGCTGG
AGGACCCCGGCGTGCACGAGGTGGTGTCGCAAAACCTAGCGACCCAAGAA
ATCAAGCGCGTTCGAAGGAAGATGAACGACCGGGGCCCCCCGCCGATGCC
GCCATCGGCCTCTCCTGGCCGGCAGGCAACGGTGGGCGGCGGAGGGGAGA
TGGTGGCAACGGGGGAAAGAAACAGCGGTAGAGCCGCCGGCGCTGCTGAA
ATAGCGGAGCGGGCGAACGGCGCGCCCCCCGCAGAGCACCGGGCACGGGT
GGACGGGCCCCGGTCGGCGGATGGGGAACGAAGGAAGCAATCAGAGAGAG
AGAACCCGGCGAGCCAAAGGGGGCCCCGAGCCGCGTCAAAGTACCGACTA
GCCAGCGAGGGGGATCCGCAGCACAACCGGAAGTACCCAAGCCGCTGGAG
GACCCCGGCGTGCACGAGGTGGTGTCGCAAAACCTAGCGACCCAAGAAAT
CAAGCGCGTTCGAAGGAAGATGAACGACCGGGGCCCCCCGCCGATGCCGC
CATCGGCCTCTCCTGGCCGGCAGGCAACGGTGGGCGGCGGAGGGGAGATG
GTGGCAACGGGGGAAAGAAACAGCGGTAGAGCCGCCGGCGCTGCTGAAAT
AGCGGAGCGGGCGAACGGCGCGCCCCCCGCAGAGCACCGGGCACGGGTGG
ACGGGCCCCGGTCGGCGGATGGGGAACGAAGGAAGCAATCAGAG back to top
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