prot_L-elsbetiae_contig7559.16456.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7559.16456.1
Unique Nameprot_L-elsbetiae_contig7559.16456.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length307
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7559.16456.1 vs. uniprot
Match: D7G1K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K4_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 3.350e-50
Identity = 129/229 (56.33%), Postives = 142/229 (62.01%), Query Frame = 0 
Query:    1 GGEPLRQLQKVCGLPGPDGSIQAFTPHDEDWPGAAGDGPAF---GPEXXXXXXXXXXXXXXXXXXXGSVFVFVMAALVGILVSYTASATLIVRKVEGLWRLPFGGGVFEALCEGMAQCWRGFCRRCXXXXF----GREGSRCGSRRGCSARLCTCRYHTTPAGEGSRLIFPPNGDIEESRRPRRGRS-GRSNGDSSTA-----RSSSLSRRTNPNPSYDAGEASRPRAR 216
            GG+ L QLQKVCGLPGPDGSIQAFTPHDE+     GD P     GP                     +V V++MAALVGILVSY  SATLIVRKVEGLWRLPFGGGVFEALCEG AQCWRGF R  XXXX     G +GS    +R   +      Y T+ AGEG RLIFP  GD EE+RR RRGRS G S G          RSSS +RRT  +  Y+  EASRPRAR
Sbjct:    6 GGKSLHQLQKVCGLPGPDGSIQAFTPHDEEEGSYFGDDPTTEDPGPSLSGGGSRKW-----------TVIVYIMAALVGILVSYVTSATLIVRKVEGLWRLPFGGGVFEALCEGAAQCWRGFRRXXXXXXXXXFRGDDGSPGDGQRPDFSERKLYGY-TSAAGEGRRLIFPTRGDAEETRRGRRGRSRGTSRGXXXXXXXXXXRSSSPTRRT-ASTFYEDEEASRPRAR 221
[Close]
BLAST of mRNA_L-elsbetiae_contig7559.16456.1 vs. uniprot
Match: A0A6H5KCH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.330e-42
Identity = 104/178 (58.43%), Postives = 113/178 (63.48%), Query Frame = 0 
Query:    1 GGEPLRQLQKVCGLPGPDGSIQAFTPHDEDWPGAAGDGPAFGPEXXXXXXXXXXXXXXXXXXXGSVFVFVMAALVGILVSYTASATLIVRKVEGLWRLPFGGGVFEALCEGMAQCWRGFCRRCXXXXF----GREGSRCGSRRGCSARLCTCRYHTTPAGEGSRLIFPPNGDIEESRR 174
            GG+ L QLQKVCGLPGPDGSIQAFTPHDE+     G  P                         +V V++MAALVGILVSY ASATLIVRKVEGLWRLPFGGGVF ALCEG AQCWRGF RRCXXXX     G +GS     R   +      Y T+ AGEG RLIFP  GD EE+RR
Sbjct:  379 GGKSLHQLQKVCGLPGPDGSIQAFTPHDEEEESYFGGDPT--------TEGTEPSVGGGGNRKWTVVVYIMAALVGILVSYVASATLIVRKVEGLWRLPFGGGVFGALCEGAAQCWRGFRRRCXXXXXXXFRGDDGSPGDDERPDFSEGKLYGY-TSAAGEGRRLIFPTRGDAEETRR 547
[Close]
BLAST of mRNA_L-elsbetiae_contig7559.16456.1 vs. uniprot
Match: A0A835ZD19_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD19_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.980e-6
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:   66 VFVFVMAALVGILVSYTASATLIVRKVEGLWRLPFGGGVFEALCEGMA 113
            V V++M A + +LVSY  SA +I+R+ EG+WRLPFGGGV +AL   +A
Sbjct:  554 VVVYLMIAALALLVSYMVSAAIILRRTEGIWRLPFGGGVLDALHRALA 601
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7559.16456.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1K4_ECTSI3.350e-5056.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCH0_9PHAE2.330e-4258.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD19_9STRA8.980e-654.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..306
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..65
NoneNo IPR availableTMHMMTMhelixcoord: 66..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7559contigL-elsbetiae_contig7559:1111..3980 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7559.16456.1mRNA_L-elsbetiae_contig7559.16456.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7559 1111..3980 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7559.16456.1 ID=prot_L-elsbetiae_contig7559.16456.1|Name=mRNA_L-elsbetiae_contig7559.16456.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
GGEPLRQLQKVCGLPGPDGSIQAFTPHDEDWPGAAGDGPAFGPEAPLGGG
ASRSGGGNSRSGKGSVFVFVMAALVGILVSYTASATLIVRKVEGLWRLPF
GGGVFEALCEGMAQCWRGFCRRCCCCCFGREGSRCGSRRGCSARLCTCRY
HTTPAGEGSRLIFPPNGDIEESRRPRRGRSGRSNGDSSTARSSSLSRRTN
PNPSYDAGEASRPRARSDSSGDGNRERRGGRYGGGGGGGGGMPASAASGR
SRTGSGSSGGGRSGSPRTSTAKKKRVQILAASAVDAAAAAARLAAEIAND
GDDEAR*
back to top