prot_L-elsbetiae_contig747.16357.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig747.16357.1
Unique Nameprot_L-elsbetiae_contig747.16357.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length90
Homology
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BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: D8LFA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFA3_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.500e-32
Identity = 56/82 (68.29%), Postives = 70/82 (85.37%), Query Frame = 0 
Query:    1 MCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANGQADEAAIASFKANI 82
            +CK CKHT+ MTGV CPCSDV V CLRCAE++C CP+  KYLLSWWTED+++ F++TA+ YL KLA+GQA+ AAIASF+ANI
Sbjct:  819 VCKNCKHTLFMTGVACPCSDVDVSCLRCAEESCDCPVAGKYLLSWWTEDDLNRFVRTAETYLRKLADGQANAAAIASFRANI 900
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BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: A0A1E7FMP1_9STRA (JmjC-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMP1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.490e-7
Identity = 24/72 (33.33%), Postives = 38/72 (52.78%), Query Frame = 0 
Query:    1 MCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANGQADE 72
            +C  CKH    + V C CS   V CLR +   C CP +++YL+ W  E+E++   +  +E   +L    AD+
Sbjct:  532 LCHACKHICFFSAVACECSRSKVSCLRHSHYMCRCPFERRYLMVWSPEEELTQTCELVKERCAELKPKDADD 603
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BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: A0A448ZL52_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZL52_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.750e-5
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 0 
Query:    1 MCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMS 52
            +C  CKH    + V C CS   V CLR +   C CP +++YL+ W  E+E++
Sbjct:  523 LCHACKHICFFSAVACECSRSKVSCLRHSHYMCRCPSERRYLMVWSPEEELT 574
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFA3_ECTSI2.500e-3268.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1E7FMP1_9STRA6.490e-733.33JmjC-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A448ZL52_9STRA2.750e-538.46Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004198Zinc finger, C5HC2-typePFAMPF02928zf-C5HC2coord: 2..52
e-value: 1.9E-9
score: 37.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig747contigL-elsbetiae_contig747:4853..5602 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig747.16357.1mRNA_L-elsbetiae_contig747.16357.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig747 4332..5669 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig747.16357.1 ID=prot_L-elsbetiae_contig747.16357.1|Name=mRNA_L-elsbetiae_contig747.16357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDE
MSVFLQTAQEYLLKLANGQADEAAIASFKANIKACYNRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004198Znf_C5HC2