prot_L-elsbetiae_contig743.16320.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig743.16320.1
Unique Nameprot_L-elsbetiae_contig743.16320.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length172
Homology
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BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5J7A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 7.130e-11
Identity = 38/74 (51.35%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:   59 TFAAVIQSALGV--------------SNALRSPFRHISQFCSEGPLPRFSPPTNSPNMSRLGSRPFGCPAKAYA 118
            TFAA +Q+  G               SN   S FRH+SQFCS  P P  SPPTNSPN+SR GSRP GC A A A
Sbjct:   35 TFAASLQTNFGTPKTLGLSVVEPYLASNIFMSSFRHVSQFCSGFPWPGSSPPTNSPNISRFGSRPSGCLATAPA 108
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7A3_9PHAE7.130e-1151.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 75..171
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..55
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig743contigL-elsbetiae_contig743:23304..23819 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig743.16320.1mRNA_L-elsbetiae_contig743.16320.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig743 23304..23819 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig743.16320.1 ID=prot_L-elsbetiae_contig743.16320.1|Name=mRNA_L-elsbetiae_contig743.16320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
LRSLSPVGCFRVYLIAGPFFVSFDRPLSASLLLLLVPGGHEPLSSRQNLL
VPRPSLFPTFAAVIQSALGVSNALRSPFRHISQFCSEGPLPRFSPPTNSP
NMSRLGSRPFGCPAKAYAVVVTKNTCLQVQVAGAQQMAAVVKLQHRRTEP
STHVSRLACPCECVPHIDPPD*
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