mRNA_L-elsbetiae_contig743.16320.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig743.16320.1
Unique NamemRNA_L-elsbetiae_contig743.16320.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5KK77_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK77_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.030e-24
Identity = 65/117 (55.56%), Postives = 70/117 (59.83%), Query Frame = -2
Query:   42 ALAGQPNGRLPKRLM-FGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKVGKREGRGTRRFCRELRGSWPPGTRRRRRLADNGRSNETKKGPAI 347
            A+A QP+GRLPKRLM FGEL+GGEN G+G  EQNW +CLK DLK FE               P  DW  AA V      GTR   RELRG WP GTR RRR ADN  SNE   GP I
Sbjct: 1472 AVARQPDGRLPKRLMMFGELMGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAANVEGGGYSGTRWCYRELRGLWPFGTRARRRPADNEPSNEETAGPKI 1588          
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.350e-22
Identity = 56/102 (54.90%), Postives = 61/102 (59.80%), Query Frame = -2
Query:   42 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFETPNADWMTAAKVGKREGRGTRRFCRELRGSWPPGTRRRRRLADNGRSNETKKGPAI 347
            A+A QP+GRLPKRLMFGELVGGE+ G+G  EQNW  CLK D+K FE                        RELRGSWP GTR RRR ADN  SNE   GP I
Sbjct:  235 AVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFE-----------------------ARELRGSWPLGTRARRRPADNEPSNEETAGPKI 313          
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5JS41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS41_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.650e-16
Identity = 41/72 (56.94%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  174 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 347
            A+A QP+GRLPKRLMFGELVGGEN G+G  EQNW +CLK DLK  E               P  DW  AAKV
Sbjct:    6 AVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMIEARHGSTPDKRSFFGIPKPDWDEAAKV 77          
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.790e-16
Identity = 42/72 (58.33%), Postives = 46/72 (63.89%), Query Frame = -2
Query:  174 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 347
            A+A QP+GRLPKRLMFGELVGGEN G+G  EQNW +CLK DLK FE               P  DW  AAKV
Sbjct:   65 AMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKV 136          
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.630e-15
Identity = 48/88 (54.55%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  174 ATCTWRHVFFVTTTA*ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 395
            AT   R V F    A A+A QP+GRLPKRLMFGELVGGEN G+G  EQNW +CLK DLK FE               P  DW  AAKV
Sbjct:  580 ATVRQRRVLF----AGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKV 663          
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.520e-15
Identity = 42/72 (58.33%), Postives = 46/72 (63.89%), Query Frame = -2
Query:  174 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 347
            A+A QP+GRLPKRLMFGELVGGEN G+G  EQNW +CLK DLK FE               P  DW  AAKV
Sbjct:  486 AVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKV 557          
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 7.320e-15
Identity = 42/72 (58.33%), Postives = 46/72 (63.89%), Query Frame = -2
Query:  174 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 347
            A+A QP+GRLPKRLMFGELVGGEN G+G  EQNW +CLK DLK FE               P  DW  AAKV
Sbjct:  184 AVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKV 255          
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5JMY1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.220e-13
Identity = 37/68 (54.41%), Postives = 42/68 (61.76%), Query Frame = -2
Query:  174 QPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 335
            +P+GRLPKRLMFGELVGGEN G+G  EQNW +CLK DLK FE               P  DW  A +V
Sbjct:   21 EPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDDAEEV 88          
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.060e-13
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = -2
Query:  210 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFE 347
            ALA QP+GRLPKRLM GELVGGE  G+G  EQNW+MCLK DLK FE
Sbjct:  770 ALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDLKMFE 815          
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.070e-12
Identity = 39/72 (54.17%), Postives = 44/72 (61.11%), Query Frame = -2
Query:  174 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 347
            A+A QP+GRLPKRLMFGELVGGE+ G+G  EQNW  CLK D+K FE               P   W  AAKV
Sbjct:  203 AVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKV 274          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK77_9PHAE3.030e-2455.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KLX9_9PHAE6.350e-2254.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS41_9PHAE3.650e-1656.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF72_9PHAE3.790e-1658.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKI4_9PHAE3.630e-1554.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA81_9PHAE6.520e-1558.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4M0_9PHAE7.320e-1558.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMY1_9PHAE1.220e-1354.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN66_9PHAE2.060e-1376.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWS4_9PHAE1.070e-1254.17Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig743contigL-elsbetiae_contig743:23304..23819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size516
Cds size516
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.6539392-CDS-L-elsbetiae_contig743:23303..238191622816827.6539392-CDS-L-elsbetiae_contig743:23303..23819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig743 23304..23819 +
1691683843.9431484-CDS-L-elsbetiae_contig743:23303..238191691683843.9431484-CDS-L-elsbetiae_contig743:23303..23819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig743 23304..23819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig743.16320.1prot_L-elsbetiae_contig743.16320.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig743 23304..23819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig743.16320.1

>prot_L-elsbetiae_contig743.16320.1 ID=prot_L-elsbetiae_contig743.16320.1|Name=mRNA_L-elsbetiae_contig743.16320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
LRSLSPVGCFRVYLIAGPFFVSFDRPLSASLLLLLVPGGHEPLSSRQNLL
VPRPSLFPTFAAVIQSALGVSNALRSPFRHISQFCSEGPLPRFSPPTNSP
NMSRLGSRPFGCPAKAYAVVVTKNTCLQVQVAGAQQMAAVVKLQHRRTEP
STHVSRLACPCECVPHIDPPD*
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mRNA from alignment at L-elsbetiae_contig743:23304..23819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig743.16320.1 ID=mRNA_L-elsbetiae_contig743.16320.1|Name=mRNA_L-elsbetiae_contig743.16320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig743:23304..23819+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCGGTCCCTTTCCCCCGTTGGTTGTTTTCGCGTCTATCTTATTGCTGG GCCCTTTTTTGTCTCGTTTGATCGCCCGTTGTCGGCGAGCCTCCTCCTCC TCCTTGTGCCGGGAGGCCATGAACCTCTCAGCTCCCGGCAGAACCTCCTC GTGCCACGTCCTTCCCTCTTCCCCACCTTCGCTGCTGTCATCCAATCGGC GTTGGGGGTTTCGAACGCCTTGAGGTCGCCCTTCAGGCACATCTCCCAGT TCTGTTCCGAGGGGCCCTTGCCCAGGTTCTCCCCCCCCACCAACTCGCCG AACATGAGCCGCTTGGGGAGTCGCCCGTTCGGTTGCCCTGCCAAGGCCTA TGCTGTGGTTGTCACAAAAAACACGTGCCTCCAAGTACAAGTTGCGGGCG CACAACAAATGGCAGCCGTCGTAAAGCTGCAGCATCGTAGAACAGAGCCA TCGACGCATGTTTCGCGGCTCGCTTGCCCGTGTGAGTGCGTTCCGCATAT CGACCCCCCAGACTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig743:23304..23819+

>mRNA_L-elsbetiae_contig743.16320.1 ID=mRNA_L-elsbetiae_contig743.16320.1|Name=mRNA_L-elsbetiae_contig743.16320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig743:23304..23819+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCGGTCCCTTTCCCCCGTTGGTTGTTTTCGCGTCTATCTTATTGCTGG
GCCCTTTTTTGTCTCGTTTGATCGCCCGTTGTCGGCGAGCCTCCTCCTCC
TCCTTGTGCCGGGAGGCCATGAACCTCTCAGCTCCCGGCAGAACCTCCTC
GTGCCACGTCCTTCCCTCTTCCCCACCTTCGCTGCTGTCATCCAATCGGC
GTTGGGGGTTTCGAACGCCTTGAGGTCGCCCTTCAGGCACATCTCCCAGT
TCTGTTCCGAGGGGCCCTTGCCCAGGTTCTCCCCCCCCACCAACTCGCCG
AACATGAGCCGCTTGGGGAGTCGCCCGTTCGGTTGCCCTGCCAAGGCCTA
TGCTGTGGTTGTCACAAAAAACACGTGCCTCCAAGTACAAGTTGCGGGCG
CACAACAAATGGCAGCCGTCGTAAAGCTGCAGCATCGTAGAACAGAGCCA
TCGACGCATGTTTCGCGGCTCGCTTGCCCGTGTGAGTGCGTTCCGCATAT
CGACCCCCCAGACTAGCTCCGGTCCCTTTCCCCCGTTGGTTGTTTTCGCG
TCTATCTTATTGCTGGGCCCTTTTTTGTCTCGTTTGATCGCCCGTTGTCG
GCGAGCCTCCTCCTCCTCCTTGTGCCGGGAGGCCATGAACCTCTCAGCTC
CCGGCAGAACCTCCTCGTGCCACGTCCTTCCCTCTTCCCCACCTTCGCTG
CTGTCATCCAATCGGCGTTGGGGGTTTCGAACGCCTTGAGGTCGCCCTTC
AGGCACATCTCCCAGTTCTGTTCCGAGGGGCCCTTGCCCAGGTTCTCCCC
CCCCACCAACTCGCCGAACATGAGCCGCTTGGGGAGTCGCCCGTTCGGTT
GCCCTGCCAAGGCCTATGCTGTGGTTGTCACAAAAAACACGTGCCTCCAA
GTACAAGTTGCGGGCGCACAACAAATGGCAGCCGTCGTAAAGCTGCAGCA
TCGTAGAACAGAGCCATCGACGCATGTTTCGCGGCTCGCTTGCCCGTGTG
AGTGCGTTCCGCATATCGACCCCCCAGACTAG
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