mRNA_L-elsbetiae_contig743.16320.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5KK77_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK77_9PHAE) HSP 1 Score: 108 bits (270), Expect = 3.030e-24 Identity = 65/117 (55.56%), Postives = 70/117 (59.83%), Query Frame = -2 Query: 42 ALAGQPNGRLPKRLM-FGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKVGKREGRGTRRFCRELRGSWPPGTRRRRRLADNGRSNETKKGPAI 347 A+A QP+GRLPKRLM FGEL+GGEN G+G EQNW +CLK DLK FE P DW AA V GTR RELRG WP GTR RRR ADN SNE GP I Sbjct: 1472 AVARQPDGRLPKRLMMFGELMGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAANVEGGGYSGTRWCYRELRGLWPFGTRARRRPADNEPSNEETAGPKI 1588
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 6.350e-22 Identity = 56/102 (54.90%), Postives = 61/102 (59.80%), Query Frame = -2 Query: 42 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFETPNADWMTAAKVGKREGRGTRRFCRELRGSWPPGTRRRRRLADNGRSNETKKGPAI 347 A+A QP+GRLPKRLMFGELVGGE+ G+G EQNW CLK D+K FE RELRGSWP GTR RRR ADN SNE GP I Sbjct: 235 AVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFE-----------------------ARELRGSWPLGTRARRRPADNEPSNEETAGPKI 313
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5JS41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS41_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 3.650e-16 Identity = 41/72 (56.94%), Postives = 45/72 (62.50%), Query Frame = -2 Query: 174 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 347 A+A QP+GRLPKRLMFGELVGGEN G+G EQNW +CLK DLK E P DW AAKV Sbjct: 6 AVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMIEARHGSTPDKRSFFGIPKPDWDEAAKV 77
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 3.790e-16 Identity = 42/72 (58.33%), Postives = 46/72 (63.89%), Query Frame = -2 Query: 174 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 347 A+A QP+GRLPKRLMFGELVGGEN G+G EQNW +CLK DLK FE P DW AAKV Sbjct: 65 AMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKV 136
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 3.630e-15 Identity = 48/88 (54.55%), Postives = 52/88 (59.09%), Query Frame = -2 Query: 174 ATCTWRHVFFVTTTA*ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 395 AT R V F A A+A QP+GRLPKRLMFGELVGGEN G+G EQNW +CLK DLK FE P DW AAKV Sbjct: 580 ATVRQRRVLF----AGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKV 663
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 6.520e-15 Identity = 42/72 (58.33%), Postives = 46/72 (63.89%), Query Frame = -2 Query: 174 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 347 A+A QP+GRLPKRLMFGELVGGEN G+G EQNW +CLK DLK FE P DW AAKV Sbjct: 486 AVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKV 557
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 7.320e-15 Identity = 42/72 (58.33%), Postives = 46/72 (63.89%), Query Frame = -2 Query: 174 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 347 A+A QP+GRLPKRLMFGELVGGEN G+G EQNW +CLK DLK FE P DW AAKV Sbjct: 184 AVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKV 255
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5JMY1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY1_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.220e-13 Identity = 37/68 (54.41%), Postives = 42/68 (61.76%), Query Frame = -2 Query: 174 QPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 335 +P+GRLPKRLMFGELVGGEN G+G EQNW +CLK DLK FE P DW A +V Sbjct: 21 EPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDDAEEV 88
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 2.060e-13 Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = -2 Query: 210 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFE 347 ALA QP+GRLPKRLM GELVGGE G+G EQNW+MCLK DLK FE Sbjct: 770 ALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDLKMFE 815
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.070e-12 Identity = 39/72 (54.17%), Postives = 44/72 (61.11%), Query Frame = -2 Query: 174 ALAGQPNGRLPKRLMFGELVGGENLGKGPSEQNWEMCLKGDLKAFET--------------PNADWMTAAKV 347 A+A QP+GRLPKRLMFGELVGGE+ G+G EQNW CLK D+K FE P W AAKV Sbjct: 203 AVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKV 274 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig743.16320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig743.16320.1 >prot_L-elsbetiae_contig743.16320.1 ID=prot_L-elsbetiae_contig743.16320.1|Name=mRNA_L-elsbetiae_contig743.16320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp LRSLSPVGCFRVYLIAGPFFVSFDRPLSASLLLLLVPGGHEPLSSRQNLLback to top mRNA from alignment at L-elsbetiae_contig743:23304..23819+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig743.16320.1 ID=mRNA_L-elsbetiae_contig743.16320.1|Name=mRNA_L-elsbetiae_contig743.16320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig743:23304..23819+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig743:23304..23819+ >mRNA_L-elsbetiae_contig743.16320.1 ID=mRNA_L-elsbetiae_contig743.16320.1|Name=mRNA_L-elsbetiae_contig743.16320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig743:23304..23819+ (Laminarionema elsbetiae ELsaHSoW15)back to top |