mRNA_L-elsbetiae_contig7428.16311.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7428.16311.1
Unique NamemRNA_L-elsbetiae_contig7428.16311.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7428.16311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7428contigL-elsbetiae_contig7428:926..1238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.3185203-UTR-L-elsbetiae_contig7428:925..9321622816827.3185203-UTR-L-elsbetiae_contig7428:925..932Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7428 926..932 +
1691683843.7361531-UTR-L-elsbetiae_contig7428:925..9321691683843.7361531-UTR-L-elsbetiae_contig7428:925..932Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7428 926..932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.3305721-CDS-L-elsbetiae_contig7428:932..12381622816827.3305721-CDS-L-elsbetiae_contig7428:932..1238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7428 933..1238 +
1691683843.748801-CDS-L-elsbetiae_contig7428:932..12381691683843.748801-CDS-L-elsbetiae_contig7428:932..1238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7428 933..1238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7428.16311.1prot_L-elsbetiae_contig7428.16311.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7428 933..1238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7428.16311.1

>prot_L-elsbetiae_contig7428.16311.1 ID=prot_L-elsbetiae_contig7428.16311.1|Name=mRNA_L-elsbetiae_contig7428.16311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MRRKRLSISPTSSVHTWVAPRFCLLACSGDQEERVLRRTHQTGWWAFPTR
SAHTWVATASVFWRGGDQEARVLQELCKGQDGQSHQHQVRTPGVAPSVRR
LA
back to top

mRNA from alignment at L-elsbetiae_contig7428:926..1238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7428.16311.1 ID=mRNA_L-elsbetiae_contig7428.16311.1|Name=mRNA_L-elsbetiae_contig7428.16311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=313bp|location=Sequence derived from alignment at L-elsbetiae_contig7428:926..1238+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGAACATGCGAAGAAAGAGATTATCAATCTCACCAACGTCAAGTGTAC
ACACCTGGGTTGCACCAAGGTTCTGTCTTTTGGCCTGTAGTGGGGACCAA
GAAGAGAGAGTTCTGCGGCGGACACACCAAACGGGATGGTGGGCCTTCCC
CACAAGAAGTGCGCACACCTGGGTTGCGACAGCGTCTGTCTTTTGGCGTG
GCGGGGACCAAGAAGCGAGAGTTCTGCAGGAACTATGCAAAGGACAAGAT
GGTCAATCTCACCAGCATCAAGTGCGCACGCCTGGGGTTGCACCAAGCGT
CCGTCGGTTAGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7428:926..1238+

>mRNA_L-elsbetiae_contig7428.16311.1 ID=mRNA_L-elsbetiae_contig7428.16311.1|Name=mRNA_L-elsbetiae_contig7428.16311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig7428:926..1238+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAAGAAAGAGATTATCAATCTCACCAACGTCAAGTGTACACACCTG
GGTTGCACCAAGGTTCTGTCTTTTGGCCTGTAGTGGGGACCAAGAAGAGA
GAGTTCTGCGGCGGACACACCAAACGGGATGGTGGGCCTTCCCCACAAGA
AGTGCGCACACCTGGGTTGCGACAGCGTCTGTCTTTTGGCGTGGCGGGGA
CCAAGAAGCGAGAGTTCTGCAGGAACTATGCAAAGGACAAGATGGTCAAT
CTCACCAGCATCAAGTGCGCACGCCTGGGGTTGCACCAAGCGTCCGTCGG
TTAGCGATGCGAAGAAAGAGATTATCAATCTCACCAACGTCAAGTGTACA
CACCTGGGTTGCACCAAGGTTCTGTCTTTTGGCCTGTAGTGGGGACCAAG
AAGAGAGAGTTCTGCGGCGGACACACCAAACGGGATGGTGGGCCTTCCCC
ACAAGAAGTGCGCACACCTGGGTTGCGACAGCGTCTGTCTTTTGGCGTGG
CGGGGACCAAGAAGCGAGAGTTCTGCAGGAACTATGCAAAGGACAAGATG
GTCAATCTCACCAGCATCAAGTGCGCACGCCTGGGGTTGCACCAAGCGTC
CGTCGGTTAGCG
back to top