mRNA_L-elsbetiae_contig7387.16263.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7387.16263.1
Unique NamemRNA_L-elsbetiae_contig7387.16263.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7387.16263.1 vs. uniprot
Match: D7FLM8_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM8_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.300e-35
Identity = 75/97 (77.32%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 DNGYDAEAVQELLEWRKRLGEETKQLDPGSAVDDTLSEELRHLRKECRSQARKLEDMHHALAAKDDDENELRSKLRKSEGQYSKLRDLLRDVRQELA 291
            +NGYDA+AVQELLEWR+RLGEETK LD G AVD  LSEEL+HLRKECR QARKLE M H L  ++D ENELR KLRKSE  YSKLRDLLRDVR+ELA
Sbjct:   76 ENGYDAKAVQELLEWRERLGEETKNLDLGDAVDGRLSEELKHLRKECRLQARKLELMQHNLETREDKENELRRKLRKSETLYSKLRDLLRDVREELA 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7387.16263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLM8_ECTSI1.300e-3577.32Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7387contigL-elsbetiae_contig7387:4368..5598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.1e-30
Seed eggNOG ortholog2880.D7FLM8
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
Ec32 ortholog descriptionKinesin-like protein
Ec32 orthologEc-17_000550.3
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size294
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7387.16263.1prot_L-elsbetiae_contig7387.16263.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7387 4370..5598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.6460905-CDS-L-elsbetiae_contig7387:4369..44381622816822.6460905-CDS-L-elsbetiae_contig7387:4369..4438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7387 4370..4438 -
1691683840.0812976-CDS-L-elsbetiae_contig7387:4369..44381691683840.0812976-CDS-L-elsbetiae_contig7387:4369..4438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7387 4370..4438 -
1622816822.6568964-CDS-L-elsbetiae_contig7387:4803..49251622816822.6568964-CDS-L-elsbetiae_contig7387:4803..4925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7387 4804..4925 -
1691683840.0937047-CDS-L-elsbetiae_contig7387:4803..49251691683840.0937047-CDS-L-elsbetiae_contig7387:4803..4925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7387 4804..4925 -
1622816822.6707923-CDS-L-elsbetiae_contig7387:5498..55981622816822.6707923-CDS-L-elsbetiae_contig7387:5498..5598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7387 5499..5598 -
1691683840.1064527-CDS-L-elsbetiae_contig7387:5498..55981691683840.1064527-CDS-L-elsbetiae_contig7387:5498..5598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7387 5499..5598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7387.16263.1

>prot_L-elsbetiae_contig7387.16263.1 ID=prot_L-elsbetiae_contig7387.16263.1|Name=mRNA_L-elsbetiae_contig7387.16263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
DNGYDAEAVQELLEWRKRLGEETKQLDPGSAVDDTLSEELRHLRKECRSQ
ARKLEDMHHALAAKDDDENELRSKLRKSEGQYSKLRDLLRDVRQELA
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mRNA from alignment at L-elsbetiae_contig7387:4368..5598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7387.16263.1 ID=mRNA_L-elsbetiae_contig7387.16263.1|Name=mRNA_L-elsbetiae_contig7387.16263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1231bp|location=Sequence derived from alignment at L-elsbetiae_contig7387:4368..5598- (Laminarionema elsbetiae ELsaHSoW15)
GACAACGGATATGACGCCGAAGCCGTGCAGGAGCTGCTAGAGTGGCGAAA
GCGTCTCGGCGAGGAAACCAAACAGCTTGATCCGGGCAGCGCTGTTGACG
GTAAGAGTGGTGGTTGTCTCGCGCGATGGTTTTTCTGTGGGATAGCCGAG
GGGCCCACCTTCTTGAATCCTCACGAGCACCATATCGCCACACGCTCCAA
ATCAAGACATCGCCATTCAAAACATGCCTACTTACAACAAGTCATTTCAA
GGATATTAAAGCAAGACGTTCTGCGGAATCATGGGCCAGCTTTGAACTGC
AGGCAACACAAACAGAATAGCACATGTCGGGAAGCACTACTGTTCATACA
TGGGCGTGCAAGAGAAAAGGGTGATAAGAAGAGCCTCGAGTACTTTCCAC
ATGAACGAGAGTGCTCCCCTACTCCCTGACCACTTGAAACCCCTGGGCCC
CTCTGACTTCTGTGCTAGACATGTGGGAACATGAAAGAGGCCCCATAACT
CGGGGAATCAACGTTCGAAACGATTTTCTGCGGATCGCCCCATGCGTGTG
TCGGTTTGGAATGCGGTCGTCGCCAAGACGGAAGGGAAAATAAAACAACG
TGTTTAAAGTACATATGGTAATTCAAAGTCATGCTTCAGTGAAACAGCAA
GGTTCCATCGTATCGTTAAACAGATACCCTGAGCGAAGAACTCAGGCACC
TGAGAAAGGAGTGCCGATCCCAAGCGCGGAAGCTGGAGGACATGCATCAC
GCCCTGGCAGCGAAAGATGACGACGAAAACGAGCTAAGGAGCAAGGTGGG
GAGGATTAAGCAACCTCTGCAGCATATGTATGTGCGAAGGAGCGATTTTT
GCAGGAGAAGCAGCGGTGCGGTTGGTGGAAAGCAGGGCCGGCAGCGCCGG
GCATTTGCCAGTCATCCGAACGACAACACGATATCGACGTCGACGAAAGT
ATCACCAAGCTCTCAAAACTTACGCCCGATGCACTCTCAGCTCTAGCAAA
AAGCCTCAGGCTCAAAGATGCAAATCTAGGAACCTTGGGAAAACTTTTCT
CCCTCGCTCTCACAATTATATTGTCCTCCCACACGTCAACATTCCCTTGC
TAATCCAAGTGAGATCCCGCCTTAAACTTGCGCGTACGTCGTCGTCGTTT
TCCCGAAAAGCTTCGGAAGTCAGAAGGGCAGTACTCCAAGCTACGCGACC
TTCTCCGGGATGTGCGCCAAGAGCTTGCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7387:4368..5598-

>mRNA_L-elsbetiae_contig7387.16263.1 ID=mRNA_L-elsbetiae_contig7387.16263.1|Name=mRNA_L-elsbetiae_contig7387.16263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig7387:4368..5598- (Laminarionema elsbetiae ELsaHSoW15)
GACAACGGATATGACGCCGAAGCCGTGCAGGAGCTGCTAGAGTGGCGAAA
GCGTCTCGGCGAGGAAACCAAACAGCTTGATCCGGGCAGCGCTGTTGACG
GACAACGGATATGACGCCGAAGCCGTGCAGGAGCTGCTAGAGTGGCGAAA
GCGTCTCGGCGAGGAAACCAAACAGCTTGATCCGGGCAGCGCTGTTGACG
ATACCCTGAGCGAAGAACTCAGGCACCTGAGAAAGGAGTGCCGATCCCAA
GCGCGGAAGCTGGAGGACATGCATCACGCCCTGGCAGCGAAAGATGACGA
CGAAAACGAGCTAAGGAGCAAGATACCCTGAGCGAAGAACTCAGGCACCT
GAGAAAGGAGTGCCGATCCCAAGCGCGGAAGCTGGAGGACATGCATCACG
CCCTGGCAGCGAAAGATGACGACGAAAACGAGCTAAGGAGCAAGCTTCGG
AAGTCAGAAGGGCAGTACTCCAAGCTACGCGACCTTCTCCGGGATGTGCG
CCAAGAGCTTGCGCTTCGGAAGTCAGAAGGGCAGTACTCCAAGCTACGCG
ACCTTCTCCGGGATGTGCGCCAAGAGCTTGCG
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