mRNA_L-elsbetiae_contig7386.16262.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7386.16262.1
Unique NamemRNA_L-elsbetiae_contig7386.16262.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Match: D7G7Q0_ECTSI (RNA methyltransferase, TrmA family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q0_ECTSI)

HSP 1 Score: 498 bits (1281), Expect = 1.500e-173
Identity = 246/273 (90.11%), Postives = 261/273 (95.60%), Query Frame = 1
Query:    1 RVKFPTVYHGVDLGNVNPSKVVDVEQCPLATKGINEALPQAREDARERVGEAFDSGEGKRLGKRGATLLFRETTEEGTVTDNNAHVSERVNG-----KAGEFFQNNPYVLPHMVEYVVARAREGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAASNEISNCLFLAGTASNIFANVSFTPSETVVIVDPPRKGCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDLFPQTRHIENVITFQDTRK 804
            +VKFPT+YHGVDLGNVNPSKVVDVE+CPLAT+GINE+LP AR++ARERV  AFDSG+GKR+GKRGATLLFRETTEEGTVTDNNAHVSERV G     KAGEFFQNNPYVLPHMV+YVVARA+EGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAA+N+ISNCLFLAGTASNIFANVSFTPSETVVIVDPPRKGCD LFLGQLFKFRP+RLVYVSCDPATQARDAKEI+A GYEAVDIQPFDLFPQTRHIENVITFQD RK
Sbjct:  242 KVKFPTIYHGVDLGNVNPSKVVDVERCPLATEGINESLPPARQEARERVQAAFDSGDGKRVGKRGATLLFRETTEEGTVTDNNAHVSERVGGMVFNFKAGEFFQNNPYVLPHMVDYVVARAKEGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAATNDISNCLFLAGTASNIFANVSFTPSETVVIVDPPRKGCDQLFLGQLFKFRPTRLVYVSCDPATQARDAKEIMANGYEAVDIQPFDLFPQTRHIENVITFQDNRK 514          
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Match: A0A6H5JJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK5_9PHAE)

HSP 1 Score: 344 bits (883), Expect = 5.570e-118
Identity = 168/176 (95.45%), Postives = 173/176 (98.30%), Query Frame = 1
Query:  277 KAGEFFQNNPYVLPHMVEYVVARAREGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAASNEISNCLFLAGTASNIFANVSFTPSETVVIVDPPRKGCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDLFPQTRHIENVITFQDTRK 804
            KAGEFFQNNPYVLPHMV+YVVARA+EGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAA+N+ISNCLFLAGTASNIFANVSFTPSETVVIVDPPRKGCD LFLGQLFKFRP+RLVYVSCDPATQARDAKEI A GYEAVDIQPFDLFPQTRHIENVITFQDTRK
Sbjct:   11 KAGEFFQNNPYVLPHMVDYVVARAKEGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAATNDISNCLFLAGTASNIFANVSFTPSETVVIVDPPRKGCDQLFLGQLFKFRPTRLVYVSCDPATQARDAKEITANGYEAVDIQPFDLFPQTRHIENVITFQDTRK 186          
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Match: A0A835YJC5_9STRA (RNA methyltransferase, TrmA family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC5_9STRA)

HSP 1 Score: 295 bits (756), Expect = 4.370e-95
Identity = 161/272 (59.19%), Postives = 189/272 (69.49%), Query Frame = 1
Query:    1 RVKFPTVYHGVDLGNVNPSKVVDVEQCPLATKGINEALPQAREDARERVGEAFDSGEGKRLGKRGATLLFRETTEEGTVTDNNAHVSERVNG-----KAGEFFQNNPYVLPHMVEYVVARAR-EGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAASNEISNCLFLAGTASNIF--ANVSFTPSETVVIVDPPRKGCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDLFPQTRHIENVITFQ 792
            R+ FPT++H +D+  V+  K++DV QCP+A          AR   R+    AF +G   R   +GATLL R   +EG V DN   V+E V+G      AGEFFQNNPYVLP MVE+V+ARAR +G  K LIDAYCGGGLF L AS  F+ CAG+E+SP AV+CATRNA  N I NC FL GTAS IF  A   F    T VIVDPPRKGCD++FL QLF F P R+VYVSCDPATQARDAK+IVA GYE  D+ PFDLFPQTRHIENVITF+
Sbjct:  171 RLPFPTLFHDIDIETVDTQKILDVPQCPIAA---------ARARVRDAAAAAFAAGRA-RFKSKGATLLLRHV-KEGVVYDNKELVTEEVSGLTFKFTAGEFFQNNPYVLPSMVEHVLARARGDGDVKFLIDAYCGGGLFALCASRHFDACAGVEVSPAAVECATRNAQLNGIENCTFLQGTASAIFDSAQQLFDALSTAVIVDPPRKGCDEVFLAQLFAFAPRRVVYVSCDPATQARDAKDIVAAGYEITDVTPFDLFPQTRHIENVITFE 431          
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Match: A0A7S3USM6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USM6_HETAK)

HSP 1 Score: 290 bits (743), Expect = 1.230e-92
Identity = 157/287 (54.70%), Postives = 189/287 (65.85%), Query Frame = 1
Query:    1 RVKFPTVYH----GVDLGNVNPSKVVDVEQCPLATKGINEALPQAREDARERVGEAFDSGE---GKRLGKR------GATLLFRETTEEGTVTDNNAHVSERVNG-------KAGEFFQNNPYVLPHMVEYVVARAREGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAASNEISNCLFLAGTASNIFANVSFTPSETVVIVDPPRKGCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDLFPQTRHIENVITFQDTR 801
            R+  PT+Y     G+DL  V+  +++DV +C +AT  IN  L   R + R  V     SGE    K+ GKR      GATLL R+  + G  TD    V E V G       KAGEFFQNNP+VLPHMVEYV+ +A+  G   L+D YCGGGLFCLSAS  FE+CAG+EIS  ++  A RNAA N++ NC F+AG + NIF NV+F P ET +I+DPPRKGCD  FL QLF F P+R+VYVSCDPATQARD K +V  GY   DIQPFDLFPQTRHIENVITF   R
Sbjct:  165 RMTMPTIYELEQRGIDLSTVDRREILDVARCEIATDAINARLGSLRAETRALVAGQL-SGEIEVPKKKGKRKHSRPMGATLLLRDALD-GVETDQTKDVYEEVRGVGLRFEFKAGEFFQNNPFVLPHMVEYVLNKAKAPGVTKLLDTYCGGGLFCLSASPHFEECAGVEISEASIASAKRNAALNKLDNCNFIAGRSENIFGNVTFNPEETAIIIDPPRKGCDQKFLDQLFAFSPARVVYVSCDPATQARDTKIMVEAGYAVTDIQPFDLFPQTRHIENVITFDGPR 449          
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Match: A0A7S2UUU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUU9_9STRA)

HSP 1 Score: 262 bits (669), Expect = 3.230e-83
Identity = 151/308 (49.03%), Postives = 187/308 (60.71%), Query Frame = 1
Query:    1 RVKFPTVYH----GVDLGNVNPSKVVDVEQCPLATKGINEALPQAREDARERVGEAFDSGEGKR------------------LGKRGATLLFRETTEEGTVTDNNAHVSERVNG-------KAGEFFQNNPYVLPHMVEYVVARAREGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAASNEIS-----------------------NCLFLAGTASNIFAN--VSFTPSETVVIVDPPRKGCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDLFPQT 762
            R+K PT+Y+    GVDL  +  +KV+D EQCP+AT+ INE LP  R + R+R+ + ++    K+                      G TLL RET E G VTD  A V ERV G       KAGEFFQNNP+VLPHM+E+VV+ AR  G  +LIDAYCGGGLFCL A+  F++ AG+EIS  AV CA RNA  N IS                        C F+AGTAS IF      F P +T +I+DPPRKGCDD FL QLF F P+R+VYVSCDPATQARD ++IV  G++ +D+ PFDLFPQT
Sbjct:   39 RMKLPTLYYLEKRGVDLSTLPMNKVLDAEQCPIATQAINERLPSLRLETRDRIRKKYEDDMKKKAEGVEEEKPKKTPRKRRNFHNMGETLLLRETLE-GVVTDPKAVVHERVKGIGLEFEFKAGEFFQNNPFVLPHMIEHVVSWARAPGVDHLIDAYCGGGLFCLCAAPHFKELAGVEISGTAVACAQRNARRNGISAEQEGEGAAGAEVQEVNHIPGAGKCRFVAGTASTIFGPGVEHFPPHQTAIILDPPRKGCDDEFLNQLFAFGPARVVYVSCDPATQARDTRKIVEAGFKILDVTPFDLFPQT 345          
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Match: A0A4D9D5L4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5L4_9STRA)

HSP 1 Score: 263 bits (673), Expect = 6.700e-83
Identity = 144/254 (56.69%), Postives = 177/254 (69.69%), Query Frame = 1
Query:   61 VVDVEQCPLATKGINEALPQAREDARERVGEAFDSGEGKRLGKRGATLLFRETTEEGTVTDNNAHVSERVNG-----KAGEFFQNNPYVLPHMVEYVVARAREGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAASNEISNCLFLAGTASNIFANVS-FTPSETVVIVDPPRKGCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDLFPQTRHIENVITFQDTRK 804
            +VDV +C +AT  IN  L   RE+ R     A    E  R  K GATLL RET E G VTD  A VS++V G      AG FFQNNPYVLPHMVEYVV +A     + L+DAYCGGGLFCLSAS +FE C G+EIS +A+  A RNA  N+I NC F AG A++IFA +   + ++TV I+DPPRKGCD+ FL QL +FRP+R+VYVSCDPATQARDA+ ++  GY+  ++QPFDLFPQTRHIENVI F +  +
Sbjct:  146 LVDVPECAIATPAINARLRGLREEVRV-TARAAAVAETPRKPK-GATLLLRETRE-GVVTDPRAEVSDQVGGLLFKYTAGSFFQNNPYVLPHMVEYVVRKAGAPNVRYLVDAYCGGGLFCLSASKNFEACYGVEISELAILSAQRNAELNKIGNCHFQAGDATDIFAGIGHISGADTVTILDPPRKGCDEGFLTQLCRFRPARIVYVSCDPATQARDARFLLERGYDIEEVQPFDLFPQTRHIENVIVFVEAHR 396          
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Match: A0A317ZGC5_9BACT (SAM-dependent methyltransferase n=2 Tax=Coraliomargarita sinensis TaxID=2174842 RepID=A0A317ZGC5_9BACT)

HSP 1 Score: 263 bits (672), Expect = 7.510e-83
Identity = 141/249 (56.63%), Postives = 171/249 (68.67%), Query Frame = 1
Query:   55 SKVVDVEQCPLATKGINEALPQAREDARERVGEAFDSGEGKRLGKRGATLLFRETTEEGTVTDNNAHVSERVNG-----KAGEFFQNNPYVLPHMVEYVVARAREGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAASNEISNCLFLAGTASNIFANVSFTPSETVVIVDPPRKGCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDLFPQTRHIENVIT 786
            +++VDV+QCP+AT+ INEALP+ARE+AR R G       GK+  KRG TLL R   E G VTD    VSERV       KAGEFFQNNPY+LP +VEYV A A   GA+ L+DAYCG GLF LS + +FE+ AG+EIS  AV  A  NA  + + N  F+ G A  IF  + F   ET +++DPPRKGCD+ F  QL  +RP RLVYVSCDPATQARD KE +A GY+   IQPFDLFP TRHIENV++
Sbjct:  165 NQIVDVQQCPIATEAINEALPEAREEAR-RAG-------GKKRRKRGGTLLMRHVLE-GVVTDPQEIVSERVGEVCFQFKAGEFFQNNPYILPELVEYVAAEAASEGARYLVDAYCGVGLFALSTAKNFEQVAGVEISEPAVRWAQANAKISNVKNARFVIGKAEAIFNGLKFPAGETAMVIDPPRKGCDESFRQQLLAYRPQRLVYVSCDPATQARDLKEFIAGGYQITRIQPFDLFPHTRHIENVVS 404          
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Match: A0A424QZZ2_9BACT (Class I SAM-dependent RNA methyltransferase n=2 Tax=Puniceicoccaceae TaxID=415002 RepID=A0A424QZZ2_9BACT)

HSP 1 Score: 261 bits (667), Expect = 5.200e-82
Identity = 141/247 (57.09%), Postives = 168/247 (68.02%), Query Frame = 1
Query:   61 VVDVEQCPLATKGINEALPQAREDARERVGEAFDSGEGKRLGKRGATLLFRETTEEGTVTDNNAHVSERVNG-----KAGEFFQNNPYVLPHMVEYVVARAREGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAASNEISNCLFLAGTASNIFANVSFTPSETVVIVDPPRKGCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDLFPQTRHIENVIT 786
            +VDVE CP+AT+ INE LP AR +ARE       SG GK+  +RG TLL R   E G VTD  A VSERV G     +AGEFFQNNPY+LP MV+YV+  A+ GG + L+DAYCG GLF LSA++SF + AG+E+S  AV  A  N   + I N  FL G A  IF  +SF P ET VI+DPPRKGCD  F  QL  +RP+R+VYVSC+PATQ RD +E +  GY    IQPFDLFP TRHIENVIT
Sbjct:  168 IVDVESCPIATQAINEVLPGARAEARE-------SG-GKKRRQRGGTLLLRHVLE-GVVTDPKAVVSERVGGLTFQFRAGEFFQNNPYILPQMVDYVIGEAKFGGVQYLVDAYCGSGLFALSAASSFTQVAGVEVSDQAVLWAQANCRISRIENARFLIGKAEAIFKGLSFLPEETTVIIDPPRKGCDASFRDQLMGYRPARVVYVSCNPATQTRDVEEFLQSGYRIERIQPFDLFPHTRHIENVIT 405          
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Match: D5ENM2_CORAD (RNA methyltransferase, TrmA family n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24) TaxID=583355 RepID=D5ENM2_CORAD)

HSP 1 Score: 261 bits (666), Expect = 6.190e-82
Identity = 144/249 (57.83%), Postives = 170/249 (68.27%), Query Frame = 1
Query:   55 SKVVDVEQCPLATKGINEALPQAREDARERVGEAFDSGEGKRLGKRGATLLFRETTEEGTVTDNNAHVSERVNG-----KAGEFFQNNPYVLPHMVEYVVARAREGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAASNEISNCLFLAGTASNIFANVSFTPSETVVIVDPPRKGCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDLFPQTRHIENVIT 786
            +++VDVEQCP+AT+ INEALP+ARE+AR        SG GK+  +RG TLL R   E G VTD  A VSERV       KAGEFFQNNP++LP MV+YV A A   GA+ L+DAYCG GLF LS + SFE+ AG+E+S  AV  A  N   + ISN  FL G A  IF  + F   ET +I+DPPRKGCD+ F  QL +FRP RLVYVSCDPATQARD K  V  GY    IQPFDLFP TRHIENV++
Sbjct:  166 NQIVDVEQCPIATREINEALPEAREEARL-------SG-GKKRRQRGGTLLLRHVLE-GVVTDPKAVVSERVRDVTFQFKAGEFFQNNPFILPKMVDYVEAEASADGARYLVDAYCGSGLFALSTAKSFEQVAGVEVSDQAVLWAQANCRISGISNARFLIGKAEAIFNGLKFPADETALIIDPPRKGCDESFRLQLLQFRPQRLVYVSCDPATQARDVKAFVDGGYRVTRIQPFDLFPHTRHIENVVS 405          
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Match: W7TEN0_9STRA (Rna family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEN0_9STRA)

HSP 1 Score: 263 bits (673), Expect = 3.620e-81
Identity = 144/254 (56.69%), Postives = 177/254 (69.69%), Query Frame = 1
Query:   61 VVDVEQCPLATKGINEALPQAREDARERVGEAFDSGEGKRLGKRGATLLFRETTEEGTVTDNNAHVSERVNG-----KAGEFFQNNPYVLPHMVEYVVARAREGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEISPMAVDCATRNAASNEISNCLFLAGTASNIFANVS-FTPSETVVIVDPPRKGCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDLFPQTRHIENVITFQDTRK 804
            +VDV +C +AT  IN  L   RE+ R     A    E  R  K GATLL RET E G VTD  A VS++V G      AG FFQNNPYVLPHMVEYVV +A     + L+DAYCGGGLFCLSAS +FE C G+EIS +A+  A RNA  N+I NC F AG A++IFA +   + ++TV I+DPPRKGCD+ FL QL +FRP+R+VYVSCDPATQARDA+ ++  GY+  ++QPFDLFPQTRHIENVI F +  +
Sbjct:  296 LVDVPECAIATPAINARLRGLREEVRV-TARAAAVAETPRKPK-GATLLLRETRE-GVVTDPRAEVSDQVGGLLFKYTAGSFFQNNPYVLPHMVEYVVRKAGAPNVRYLVDAYCGGGLFCLSASKNFEACYGVEISELAILSAQRNAELNKIGNCHFQAGDATDIFAGIGHISGADTVTILDPPRKGCDEGFLTQLCRFRPARIVYVSCDPATQARDARFLLERGYDIEEVQPFDLFPQTRHIENVIVFVEAHR 546          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7386.16262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q0_ECTSI1.500e-17390.11RNA methyltransferase, TrmA family n=1 Tax=Ectocar... [more]
A0A6H5JJK5_9PHAE5.570e-11895.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJC5_9STRA4.370e-9559.19RNA methyltransferase, TrmA family n=1 Tax=Tribone... [more]
A0A7S3USM6_HETAK1.230e-9254.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UUU9_9STRA3.230e-8349.03Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9D5L4_9STRA6.700e-8356.69Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A317ZGC5_9BACT7.510e-8356.63SAM-dependent methyltransferase n=2 Tax=Coraliomar... [more]
A0A424QZZ2_9BACT5.200e-8257.09Class I SAM-dependent RNA methyltransferase n=2 Ta... [more]
D5ENM2_CORAD6.190e-8257.83RNA methyltransferase, TrmA family n=1 Tax=Coralio... [more]
W7TEN0_9STRA3.620e-8156.69Rna family n=1 Tax=Nannochloropsis gaditana TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7386contigL-elsbetiae_contig7386:4487..9661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score502.3
Seed ortholog evalue1.4e-139
Seed eggNOG ortholog2880.D7G7Q0
Preferred nameTRM2
KEGG koko:K15331
Hectar predicted targeting categoryother localisation
GOsGO:0000014,GO:0001510,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008309,GO:0008409,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016740,GO:0016741,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0030488,GO:0030696,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035312,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051908,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:0140098,GO:0140101,GO:1901360
EggNOG free text desc.S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
EggNOG OGsCOG2265@1,KOG2187@2759
EC2.1.1.35
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Ec32 ortholog descriptionTRAM domain
Ec32 orthologEc-06_000810.1
Exons5
Model size810
Cds size810
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7386.16262.1prot_L-elsbetiae_contig7386.16262.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7386 4487..9661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.5153081-CDS-L-elsbetiae_contig7386:4486..46121622816822.5153081-CDS-L-elsbetiae_contig7386:4486..4612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7386 4487..4612 -
1691683840.006358-CDS-L-elsbetiae_contig7386:4486..46121691683840.006358-CDS-L-elsbetiae_contig7386:4486..4612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7386 4487..4612 -
1622816822.5302517-CDS-L-elsbetiae_contig7386:5575..56631622816822.5302517-CDS-L-elsbetiae_contig7386:5575..5663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7386 5576..5663 -
1691683840.021044-CDS-L-elsbetiae_contig7386:5575..56631691683840.021044-CDS-L-elsbetiae_contig7386:5575..5663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7386 5576..5663 -
1622816822.5436664-CDS-L-elsbetiae_contig7386:6471..65641622816822.5436664-CDS-L-elsbetiae_contig7386:6471..6564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7386 6472..6564 -
1691683840.0316062-CDS-L-elsbetiae_contig7386:6471..65641691683840.0316062-CDS-L-elsbetiae_contig7386:6471..6564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7386 6472..6564 -
1622816822.5548744-CDS-L-elsbetiae_contig7386:7796..80201622816822.5548744-CDS-L-elsbetiae_contig7386:7796..8020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7386 7797..8020 -
1691683840.0407724-CDS-L-elsbetiae_contig7386:7796..80201691683840.0407724-CDS-L-elsbetiae_contig7386:7796..8020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7386 7797..8020 -
1622816822.5673974-CDS-L-elsbetiae_contig7386:9382..96611622816822.5673974-CDS-L-elsbetiae_contig7386:9382..9661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7386 9383..9661 -
1691683840.0497444-CDS-L-elsbetiae_contig7386:9382..96611691683840.0497444-CDS-L-elsbetiae_contig7386:9382..9661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7386 9383..9661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7386.16262.1

>prot_L-elsbetiae_contig7386.16262.1 ID=prot_L-elsbetiae_contig7386.16262.1|Name=mRNA_L-elsbetiae_contig7386.16262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=270bp
RVKFPTVYHGVDLGNVNPSKVVDVEQCPLATKGINEALPQAREDARERVG
EAFDSGEGKRLGKRGATLLFRETTEEGTVTDNNAHVSERVNGKAGEFFQN
NPYVLPHMVEYVVARAREGGAKNLIDAYCGGGLFCLSASTSFEKCAGIEI
SPMAVDCATRNAASNEISNCLFLAGTASNIFANVSFTPSETVVIVDPPRK
GCDDLFLGQLFKFRPSRLVYVSCDPATQARDAKEIVAEGYEAVDIQPFDL
FPQTRHIENVITFQDTRKP*
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mRNA from alignment at L-elsbetiae_contig7386:4487..9661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7386.16262.1 ID=mRNA_L-elsbetiae_contig7386.16262.1|Name=mRNA_L-elsbetiae_contig7386.16262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5175bp|location=Sequence derived from alignment at L-elsbetiae_contig7386:4487..9661- (Laminarionema elsbetiae ELsaHSoW15)
AGGGTGAAGTTTCCCACGGTCTACCACGGGGTCGACCTGGGGAACGTCAA CCCCAGCAAGGTGGTGGACGTGGAGCAGTGCCCTCTCGCGACGAAGGGGA TCAACGAGGCCCTTCCCCAGGCGCGCGAGGACGCCCGGGAGCGCGTGGGC GAGGCGTTCGACTCGGGCGAGGGGAAGCGGCTGGGGAAGCGGGGGGCCAC GCTGCTGTTTCGGGAGACGACTGAGGAGGGCACGGTGACCGACAACAACG CCCACGTCTCGGAGCGCGTCAACGGGAAGGTCTTCAACTTTAAGGCAAGC AGGGCAGAGCAGAGAGCAGGGCAGGGTGCCCTTTTCTTCCTGTCGCCTCA AAGGGGTGGCATGTGCGCTGGCTGTTTCGTGTTCTTGACTGCCTTTTGGT TTGTTGGTGTTGCTGTTGTCGTTGTTGTTGTTGCTGTTGTTGTTGTCGTT GTTGTTGCTGTTGTTGTTGTCTCTGTTGTTGTCTTTGTTGTTGTTGTTGT CTTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGATGTTGTTGTCGCTG TTGTAGTTGTTGTTGTTGTTGGTTGTTGTCGTTGTCGTTGTTGTTGTTGT TGTTGCTGTTGTTTCTTGTTATTCTTGTTATGGATACCCGCACGTTTACC AGCGCTAGGACGGGGGAGGGTCCCGAGAAAGTTTAGAGGCAGCGCACCAT TTTTGGTCGCTGCGTGGTGACCGCAGCGGTTTGGGTTTTTTGCCTGCCAG TGTGCTGTGTCTGCCCTGGACGCAGAGGTGCAGCAGTGATAGCTCCCCTG CTGCTAGTGTTGGTAGGCTCAAACAAGACGCTGCTGTTGTTGTTATCTTG TGTATCGGGCTGTAATCGTGGGAAAGGATAGAGGGTCACGCGTTTGTGTG GTGAGAAACAGATGATGACGTGTGCGTGGGAATGCACCTAGAAACGGGGG TCACGTTATTTGTCACGTGATGGTGTTAGTTGTACGTAGAGGCCTGGTCG TGTGTGCAACTCTCACCTTTTTCAGCAGCAGTATATGTAAACTGCTGTTG TGGGAGTTGAGTTTACTTCGAGGAGAGGCAGGTATAGATGCCTGGTTTCT TACGTGTGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTAAGGCAG CATCCTCCCCGTGATGTAGGCGCCGTTGTACACGTAGTTGTAGCTTTCTT CCTTCCCTTCCGTCCGACTAAAGTGCCCAAGTAGACTGGTTGTTTTTGTG TTTTTGACTGCGAGCGGCCCCGGGGTTGATTGTTGTGTGCTGTTTTCTTT GCGGTTGGGGTGCTCGTGTGGGTGGATGGTGGTGTTGAGCCTAGGCTCGT GTTCCGGGAACCCCCTCTCCTGCATCTTGCGTGTTGCGATCAAAAGCTCG ACAGGCCGGGTGTAGGGGGTAGGTCGCTCGCTTGCTTGCTGCTCCTTGGT CCTTGGTCCTTGGTTTGCCACCAGAGGGGAGGTTGTGTTCTCCCGAAGAG GCGAACGTGCCCCAAAGGGGTGGGCCAATGTTTGTGTTTTTCCTAGGTAC ATACAGGGCATTCGTTGCTCGTCACATCTCAACTCGGCCCCCCCGCACCC GCCCCCCTTCCACCCCCCCCCCCCCCCCCAAAAAAAAAAAGGCGGGCGAA TTTTTCCAGAACAACCCGTACGTGCTGCCCCACATGGTGGAGTACGTAGT GGCGCGAGCCAGGGAGGGAGGCGCGAAGAACCTCATCGACGCGTACTGCG GCGGGGGTCTGTTCTGCCTGTCCGCGAGCACCTCGTTCGAGAAGTGCGCC GGGATCGAGATCAGCCCCATGGCCGTCGACTGCGCGACGCGAAATGCCGC ATCCAACGAAATATCGTGAGAGACGCGCCCCGCCCGCGGCCACCGCAACA TATATATATATATTGCGAACGATGTGACGCCTGACTCAGTAACCCAATCT AGGGTAAGTTAGCCTCTGTGACCACGGGAATCGACCGCATCAAGTATTGG ATCAGGACGGACTGATGGAGGTACTTGATAGAGAGATAGAGAGATCGGAA CGGTTTTTCATGTGAAGACGACAACAACAACAACAACAAACGATGACACG CACACACCGGGCGTCGAACTCAAACTATCTCTCTGTTCATCGTCAACGAC TTGTGTAGTATGTATGTCGCCACCATGCGTGCGACGGCACCAACAATTAC GCCTTGACGCCTCATCAAAATCAGCCAAGCGACGGCAGCAGCAGTAAATA GCAAATAAAAGCTCCGAAGAACGCCCAGCGCGTGGCGCGACACCGCAAAA AAAGACGCAGTAGAAGCCATTCATGCCACCTTCCTTCTCTTTTAGATAGA CTCTGGTCGACAAAGTACCCCATCAACATGATACGTGTGGCCTCCAGACT TCCGGTATTTGTTTGTCGAGACGGTTTGTTCCATCATTTGTGCGCAGTGC GCAGAAACACACCATGCTTCCTGAAGATGCGGCATTCAATATTGAAAGAT AAGCAGATAATCAGAAATAGAACCTAACCCACATTGGAGACGGGACTCCC ATGAGAATTTTCGGTATTCCATATTATTTCACATGTAGGCATCCCTACTC GCGTGAGCGGGAGGTCCCAAGAGTAGTGAGGTGAACTCACAACTCGGGCA GTTGCTTATTTCCTTTCGTGATATGTGGCGAGGTTAGCCAAGCTCATCCG AGTCGTCTCGGCTTTAAGCTGGTTCGAGAGTGGCCTCTTCCGTTGACATG CCATCTTGGACATATCAAACCGAGACTCTTTAGGTCTGTATGTGCGTACG TACTTTGACAGGAAAGATCCATATCCAGGTATCCACACACGCTAAATAAA AAATAAATAAAAAATAAAAAATGCTGATGGATGGCAATGCCGGTTCCTTT GCCAAGTAAAAGAGACTTGCTATTGGCGCTCGTTACTTCTTATTTTTTTG TCTACACAAATACGTACGGTGCAATTTTTTCGGTGCTACTAATATGTACG TATGAAGTATGCACCAACGACGATGTCGATGTCGGTTTCGGCGATTTCAG TTTGTGGCGGGTGTGCATGGCGCGCGCGCGCGTGTGTGTGTGCGCAGGAA CTGTCTGTTCCTGGCGGGAACAGCGTCCAACATCTTCGCCAACGTATCCT TCACGCCCAGCGAAACGGTCGTCATCGTCGACCCTCCCCGGTTAGTCTTG AATGAAGTCTACTACTGGAGCCCGCACTGAATAGTGGCGTCGATTCGTGT TTTACTGCTGCTGTCGTTTTTTTGCGTGCCACTCTCGTTGTGATGATAGT TTTGTTTTGGTGTTCCAGACGTGTGCGAAATGCTCTCTTTGTTGCCGCCG CAGTTCCAAACGATTTCGCGCGATTTTTTGGACGTGTAGTGTGCAGATGC TTGTGATCGCCATGCACCATTTCAATTGATGCATACATACAAATGTCAGC AGTCCACGTCCAGTCTGCGATTTTTTTTTTCAAGTATTTTTAGGTAGAAG TATAAGTTATCCTGTGACCACGGGAATTGACCGCATCAAGTGGTATTGAT TGTACGGACATAGGGAGGTACTGGGTGGAGAGATCGGAACGGTTTTTAAT GTGAAGAATCAACAAACAACATCTTGTGTAAGGGTGCGTGGTACTGCGGT CGTGTGTAGCCGGACAGCCAAACCGCGCGGATGGTCTGTCGTTCGTGCGC GCATGGTTAAAAAGCGCTGCCAGGCAGATAGTCCTACAGCGGTATGTATG TATTTACAGAGTATGTATGTAAGATGAAACCTCGCGAGTCTGCCTCCACT CGCGAAAGGTGTCTTTTTTGCAGCTCTTCAGGCGAGCGCTCTCTCTGTCT CTCTGTCTCTCTGTCTCTCTCTCTCTCTTGTCGCTCTTAGTACTTCTGCT ACTATACTCTGTGTCTGCCTTTCCTTTATCGCCGTGGCGTCCTTGTCGTA CATACTCCTATGTATTTACGTTGTTTGCGTTTTTTTGTCGACACACAGCA AGGGGTGCGACGACTTGTTCCTGGGGCAGCTGTTCAAGTTCAGACCGAGT AGGCTGGTCTACGTCAGCTGCGACCCAGCCACTCAGGTGCGCGCATTTGC GCATGCATGGGGCGCGAGCGCAGCGGTTCAGATTTGCGCGCACAAATTCA AATCACAGCAGTAGTGGGTTGCTGCCTCGATCGCAAACGTGTAGGCCACC TAGACGAACCTGTGGCAGCTTCTGTCCCATGGCATGTTTTCCTTTTGCGC AAGCAAGTGCGCCATCTGAGTGCGTGTCGGACATGATACGTTTTGTCCTC CAGGAGGCACGGGTGTGTGTCTCTCTTGTGCTTTCATTGTCGGGAATGCA CGTCTCGCCGTCAAAAGGTTGAGATGTGTTGTTTGCACTGCTGTCTTCAC ATTAAAAACCGTTCCAGTCTCTTTATCCAGTACACCTCCATAAGTCCGTA CTAACCCAACACTTGATGCGATCAACTCCCGTGGTCGCAGGCTAACTTAT ACCCCAAGAAAAGGTACACGAAAAATAAAATGGACCCGAAGGGCCAGCAA AGCAACAATAAAACAGATATCGAATCTGTGATATCCAGTGCTTTTTTTTT CTGTGTGCACAGGGGGTTCTATACTCTACCATTGTTAGCCGTCGTATCGA TGGCATCACCCTACATACTGAAAACAATAATGGAATCAAACAGTTTTTAA GGGGCTGGACTAGACATGTTCGACGGCTCTCTCTACATAAGCATGTTGTG CTGGAACTATCGAAGAAGGTCGTGGTGGTGGGGGTGCCATTTAATTTAGC CAAAGGAAATCCCAGAAAATCATGCAGTGCTCTCGGGTTATTTGCTCATT GCACTCGACCTGCCCACGCATTCCCCTCGGTTTTCGCAAACGTGAACTTA GTTGCTAGCCTTTTTCTTTCCTCGTGGACGCCCCCCATCTGCCTCCCGTT CACCTTGTGCTTTCGTTCTGTTTTCGTTGCTTGCGTCTGTCTTCAAACCG CGTGTCAACACCACGCCGGGGTGCGAACCGCGATGGATCAACCATCAAGG CTCGCGACGCCAAGGAGATCGTGGCGGAGGGGTACGAAGCCGTGGACATC CAACCGTTCGACCTTTTTCCGCAAACGAGGCACATCGAGAACGTTATCAC CTTCCAGGACACAAGGAAACCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7386:4487..9661-

>mRNA_L-elsbetiae_contig7386.16262.1 ID=mRNA_L-elsbetiae_contig7386.16262.1|Name=mRNA_L-elsbetiae_contig7386.16262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig7386:4487..9661- (Laminarionema elsbetiae ELsaHSoW15)
AGGGTGAAGTTTCCCACGGTCTACCACGGGGTCGACCTGGGGAACGTCAA
CCCCAGCAAGGTGGTGGACGTGGAGCAGTGCCCTCTCGCGACGAAGGGGA
TCAACGAGGCCCTTCCCCAGGCGCGCGAGGACGCCCGGGAGCGCGTGGGC
GAGGCGTTCGACTCGGGCGAGGGGAAGCGGCTGGGGAAGCGGGGGGCCAC
GCTGCTGTTTCGGGAGACGACTGAGGAGGGCACGGTGACCGACAACAACG
CCCACGTCTCGGAGCGCGTCAACGGGAAGAGGGTGAAGTTTCCCACGGTC
TACCACGGGGTCGACCTGGGGAACGTCAACCCCAGCAAGGTGGTGGACGT
GGAGCAGTGCCCTCTCGCGACGAAGGGGATCAACGAGGCCCTTCCCCAGG
CGCGCGAGGACGCCCGGGAGCGCGTGGGCGAGGCGTTCGACTCGGGCGAG
GGGAAGCGGCTGGGGAAGCGGGGGGCCACGCTGCTGTTTCGGGAGACGAC
TGAGGAGGGCACGGTGACCGACAACAACGCCCACGTCTCGGAGCGCGTCA
ACGGGAAGGCGGGCGAATTTTTCCAGAACAACCCGTACGTGCTGCCCCAC
ATGGTGGAGTACGTAGTGGCGCGAGCCAGGGAGGGAGGCGCGAAGAACCT
CATCGACGCGTACTGCGGCGGGGGTCTGTTCTGCCTGTCCGCGAGCACCT
CGTTCGAGAAGTGCGCCGGGATCGAGATCAGCCCCATGGCCGTCGACTGC
GCGACGCGAAATGCCGCATCCAACGAAATATCGCGGGCGAATTTTTCCAG
AACAACCCGTACGTGCTGCCCCACATGGTGGAGTACGTAGTGGCGCGAGC
CAGGGAGGGAGGCGCGAAGAACCTCATCGACGCGTACTGCGGCGGGGGTC
TGTTCTGCCTGTCCGCGAGCACCTCGTTCGAGAAGTGCGCCGGGATCGAG
ATCAGCCCCATGGCCGTCGACTGCGCGACGCGAAATGCCGCATCCAACGA
AATATCGAACTGTCTGTTCCTGGCGGGAACAGCGTCCAACATCTTCGCCA
ACGTATCCTTCACGCCCAGCGAAACGGTCGTCATCGTCGACCCTCCCCGG
AACTGTCTGTTCCTGGCGGGAACAGCGTCCAACATCTTCGCCAACGTATC
CTTCACGCCCAGCGAAACGGTCGTCATCGTCGACCCTCCCCGCAAGGGGT
GCGACGACTTGTTCCTGGGGCAGCTGTTCAAGTTCAGACCGAGTAGGCTG
GTCTACGTCAGCTGCGACCCAGCCACTCAGCAAGGGGTGCGACGACTTGT
TCCTGGGGCAGCTGTTCAAGTTCAGACCGAGTAGGCTGGTCTACGTCAGC
TGCGACCCAGCCACTCAGGCTCGCGACGCCAAGGAGATCGTGGCGGAGGG
GTACGAAGCCGTGGACATCCAACCGTTCGACCTTTTTCCGCAAACGAGGC
ACATCGAGAACGTTATCACCTTCCAGGACACAAGGAAACCGTGAGCTCGC
GACGCCAAGGAGATCGTGGCGGAGGGGTACGAAGCCGTGGACATCCAACC
GTTCGACCTTTTTCCGCAAACGAGGCACATCGAGAACGTTATCACCTTCC
AGGACACAAGGAAACCGTGA
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