mRNA_L-elsbetiae_contig7371.16245.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7371.16245.1
Unique NamemRNA_L-elsbetiae_contig7371.16245.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Match: A0A4Y9YHS6_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9YHS6_9AGAM)

HSP 1 Score: 104 bits (259), Expect = 3.030e-23
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEIAAISYCAKEAVHIRGVLNELLLPNFHCISLGNDNTGALSNLSNRCFSSRTKHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTK 408
            LT Y DA +A+D+  RRS+SGY+FM+  + +SW S  Q  TALS+ E+E  A ++ AKEA+ +RG L EL  P      L  DN  A++   N  F +RTKH+ +R  F  + V  G+L L +VP+    AD LTK
Sbjct: 1273 LTCYTDADWASDVNDRRSISGYVFMMCRAAVSWSSKKQPSTALSSTEAEYIAGAHAAKEAIWMRGFLAELWQPRSGPTILLMDNQSAMAIARNPAFHARTKHIDVRHHFLREKVEEGILDLEYVPTGEQVADVLTK 1408          
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.520e-23
Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 1
Query:    1 LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEIAAISYCAKEAVHIRGVLNELLLPNFHCISLGNDNTGALSNLSNRCFSSRTKHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTKATSK 420
            L+ + D+SF  + +  RS +GY+F L    IS+ +  Q+L A +T+E+E+ A+S+ A+EAV+I   + E+    F  + + +D+TGAL+  SN  FSSRTKH+ +R  F  +L     ++L H PSAT+ AD  TK   K
Sbjct:  143 LSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPK 282          
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Match: A0A6H5KMQ5_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ5_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.010e-23
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    1 LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEIAAISYCAKEAVHIRGVLNELLLPNFHCISLGNDNTGALSNLSNRCFSSRTKHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTKATSK 420
            L A+ D+SF  + +  RS +GY+F L+   IS+ +  Q+LTA ST+E+EI A+SY A+EAV+I   + EL    F  + + +D+TGAL+   N   S RTKH+ +R  F   LV  G ++L H PS    AD  TK   K
Sbjct:   62 LAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRGLVLRGQITLHHRPSEHQLADIATKYLPK 201          
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Match: A0A6H5JKZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.920e-23
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 1
Query:    1 LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEIAAISYCAKEAVHIRGVLNELLLPNFHCISLGNDNTGALSNLSNRCFSSRTKHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTKATSK 420
            L A+ D+SF  + +  RS +GY+F L+   IS+ +  Q+LTA ST+E+EI A+SY A+EAV+I   + EL    F  + + +D+TGAL+   N   S RTKH+ +R  F  +LV  G ++L H PS    AD  TK   K
Sbjct:  120 LAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPK 259          
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Match: A0A4Q2UTC2_FUSOX (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Fusarium oxysporum f. sp. narcissi TaxID=451672 RepID=A0A4Q2UTC2_FUSOX)

HSP 1 Score: 100 bits (250), Expect = 7.700e-23
Identity = 59/145 (40.69%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEIAAISYCAKEAVHIRGVLNELL-----LPNFHCISLGNDNTGALSNLSNRCFSSRTKHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTKATSK 420
            L  Y D+ +A DLE RRS SGY+F L +  ISW S  Q   ALS+ E+E    +  AKEAV +RG+L ELL     +P      +  DN GA++   N  F +RTKH+ I+  +C + V+ G +   ++P+    AD LTKA  K
Sbjct:  170 LLGYTDSDWAGDLETRRSTSGYVFNLGTGAISWSSKRQRTVALSSCEAEYMGQTAAAKEAVWLRGLLQELLKEYREVPELKTTVIFGDNQGAIAMSKNPQFHTRTKHIDIQHHYCREKVNDGTVEFQYIPTGKQVADGLTKALPK 314          
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Match: A0A2K3KT95_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3KT95_TRIPR)

HSP 1 Score: 98.2 bits (243), Expect = 1.270e-22
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    1 LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEIAAISYCAKEAVHIRGVLNELLLPNFHCISLGNDNTGALSNLSNRCFSSRTKHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTKATS 417
            +  + D+ +A DL++RRS +GY+F +   P+SW S +QS  ALST E+E  A++   KEA+ +RG+L++L +    C+ L  D+  AL    N+   +RTKH+ +R  F  D+V  G +SL  V +    AD LTK  S
Sbjct:   70 INGFVDSDYAGDLDRRRSTTGYVFQIHGVPVSWRSMLQSTVALSTTEAEYMAVAEGVKEALWLRGLLDDLGMKQ-ECVKLSCDSQSALHLAKNQVHHARTKHIDVRYHFVRDVVEEGNISLTKVHTDENSADMLTKVVS 207          
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.540e-22
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 1
Query:    1 LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEIAAISYCAKEAVHIRGVLNELLLPNFHCISLGNDNTGALSNLSNRCFSSRTKHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTKATSK 420
            L A+ D+SF  + +  RS +GY+F L+   IS+ +  Q+LTA ST+E+EI A+SY A+EAV+I   + EL    F  + + +D+TGAL+   N   S RTKH+ +R  F  +LV  G ++L H PS    AD  TK   K
Sbjct:  179 LAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPK 318          
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Match: A0A6H5JN55_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN55_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.440e-22
Identity = 56/140 (40.00%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    1 LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEIAAISYCAKEAVHIRGVLNELLLPNFHCISLGNDNTGALSNLSNRCFSSRTKHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTKATSK 420
            L+ + D+SF  + + RRS +GY+F L    IS+ +  Q+L A +T+E+E+ A+S+ A+EAV+I   + E+    F  + + +D+TGAL+  SN  FSSRTKH+ +R  F  +L     ++L H PSAT+ AD  TK   K
Sbjct:  657 LSCFTDSSFGANPDNRRSPTGYLFSLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLGELTKRHRITLHHQPSATMLADIATKHLPK 796          
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.650e-22
Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 1
Query:    1 LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEIAAISYCAKEAVHIRGVLNELLLPNFHCISLGNDNTGALSNLSNRCFSSRTKHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTKATSK 420
            L+ + D+SF  + +  RS +GY+F L    IS+ +  Q+L A +T+E+E+ A+S+ A+EAV+I   + E+    F  + + +D+TGAL+  SN  FSSRTKH+ +R  F  +L     ++L H PSAT+ AD  TK   K
Sbjct:  580 LSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPK 719          
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.750e-22
Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 1
Query:    1 LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEIAAISYCAKEAVHIRGVLNELLLPNFHCISLGNDNTGALSNLSNRCFSSRTKHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTKATSK 420
            L+ + D+SF  + +  RS +GY+F L    IS+ +  Q+L A +T+E+E+ A+S+ A+EAV+I   + E+    F  + + +D+TGAL+  SN  FSSRTKH+ +R  F  +L     ++L H PSAT+ AD  TK   K
Sbjct:  739 LSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPK 878          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7371.16245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9YHS6_9AGAM3.030e-2343.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC04_9PHAE4.520e-2339.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMQ5_9PHAE5.010e-2341.43Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKZ9_9PHAE5.920e-2341.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Q2UTC2_FUSOX7.700e-2340.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3KT95_TRIPR1.270e-2238.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5K4S5_9PHAE1.540e-2241.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN55_9PHAE3.440e-2240.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE4.650e-2239.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S9_9PHAE4.750e-2239.29CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7371contigL-elsbetiae_contig7371:9248..9667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score100.9
Seed ortholog evalue5e-19
Seed eggNOG ortholog7070.TC002223-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.459386-CDS-L-elsbetiae_contig7371:9247..96671622816820.459386-CDS-L-elsbetiae_contig7371:9247..9667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7371 9248..9667 -
1691683838.49423-CDS-L-elsbetiae_contig7371:9247..96671691683838.49423-CDS-L-elsbetiae_contig7371:9247..9667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7371 9248..9667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7371.16245.1prot_L-elsbetiae_contig7371.16245.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7371 9248..9667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7371.16245.1

>prot_L-elsbetiae_contig7371.16245.1 ID=prot_L-elsbetiae_contig7371.16245.1|Name=mRNA_L-elsbetiae_contig7371.16245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
LTAYADASFANDLEKRRSVSGYIFMLSSSPISWCSAMQSLTALSTMESEI
AAISYCAKEAVHIRGVLNELLLPNFHCISLGNDNTGALSNLSNRCFSSRT
KHMQIRKVFCLDLVSSGVLSLWHVPSATLPADYLTKATSK
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mRNA from alignment at L-elsbetiae_contig7371:9248..9667-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7371.16245.1 ID=mRNA_L-elsbetiae_contig7371.16245.1|Name=mRNA_L-elsbetiae_contig7371.16245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig7371:9248..9667- (Laminarionema elsbetiae ELsaHSoW15)
TTGACTGCCTATGCAGATGCATCGTTCGCCAACGACCTTGAAAAGAGACG CAGTGTCTCAGGTTATATCTTTATGTTGAGCTCATCACCAATCAGCTGGT GTTCTGCCATGCAATCACTAACAGCCCTAAGCACAATGGAAAGCGAAATC GCAGCAATCAGTTACTGCGCAAAGGAGGCAGTACACATACGAGGTGTTCT GAACGAACTCCTTCTGCCAAATTTCCACTGCATCAGTCTCGGCAACGACA ACACTGGCGCTCTGTCAAATCTCAGCAACAGATGCTTCAGTAGCCGAACT AAACACATGCAAATTAGGAAAGTGTTTTGTCTTGATCTCGTAAGCTCAGG GGTGCTTAGTCTATGGCATGTGCCGTCTGCGACTCTGCCAGCTGACTACT TGACGAAAGCAACATCCAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7371:9248..9667-

>mRNA_L-elsbetiae_contig7371.16245.1 ID=mRNA_L-elsbetiae_contig7371.16245.1|Name=mRNA_L-elsbetiae_contig7371.16245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig7371:9248..9667- (Laminarionema elsbetiae ELsaHSoW15)
TTGACTGCCTATGCAGATGCATCGTTCGCCAACGACCTTGAAAAGAGACG
CAGTGTCTCAGGTTATATCTTTATGTTGAGCTCATCACCAATCAGCTGGT
GTTCTGCCATGCAATCACTAACAGCCCTAAGCACAATGGAAAGCGAAATC
GCAGCAATCAGTTACTGCGCAAAGGAGGCAGTACACATACGAGGTGTTCT
GAACGAACTCCTTCTGCCAAATTTCCACTGCATCAGTCTCGGCAACGACA
ACACTGGCGCTCTGTCAAATCTCAGCAACAGATGCTTCAGTAGCCGAACT
AAACACATGCAAATTAGGAAAGTGTTTTGTCTTGATCTCGTAAGCTCAGG
GGTGCTTAGTCTATGGCATGTGCCGTCTGCGACTCTGCCAGCTGACTACT
TGACGAAAGCAACATCCAAATTGACTGCCTATGCAGATGCATCGTTCGCC
AACGACCTTGAAAAGAGACGCAGTGTCTCAGGTTATATCTTTATGTTGAG
CTCATCACCAATCAGCTGGTGTTCTGCCATGCAATCACTAACAGCCCTAA
GCACAATGGAAAGCGAAATCGCAGCAATCAGTTACTGCGCAAAGGAGGCA
GTACACATACGAGGTGTTCTGAACGAACTCCTTCTGCCAAATTTCCACTG
CATCAGTCTCGGCAACGACAACACTGGCGCTCTGTCAAATCTCAGCAACA
GATGCTTCAGTAGCCGAACTAAACACATGCAAATTAGGAAAGTGTTTTGT
CTTGATCTCGTAAGCTCAGGGGTGCTTAGTCTATGGCATGTGCCGTCTGC
GACTCTGCCAGCTGACTACTTGACGAAAGCAACATCCAAA
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