mRNA_L-elsbetiae_contig7371.16243.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7371.16243.1
Unique NamemRNA_L-elsbetiae_contig7371.16243.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7371.16243.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI)

HSP 1 Score: 337 bits (865), Expect = 1.520e-108
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 1 
Query:    1 GATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTGGCNAPKFGEAGVTKSDRFSWKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAKQKGSDKKRAQK 516
            GATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITT GCNAPKFGEAGVT SDRFSW LDDHDNLILPVHNSNSYGGKHPRCQIGGVV VERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGA+QKGSDKKRAQK
Sbjct:  488 GATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTDGCNAPKFGEAGVTNSDRFSWTLDDHDNLILPVHNSNSYGGKHPRCQIGGVVLVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAQQKGSDKKRAQK 659
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BLAST of mRNA_L-elsbetiae_contig7371.16243.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.580e-73
Identity = 123/172 (71.51%), Postives = 137/172 (79.65%), Query Frame = 1 
Query:   19 GANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTGGCNAPKFGEAGVTKSDRFSWKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAKQKGSDKKRAQK**VSRV 534
            G + VG AP+N AAA  R+ IP  P+PA+A GFCFG+GADG GLA KLKQLFAGENGFG+GPITT GC+ PKFGEAGVTKSDRFSW+LD+   LILP HN+N+ GGKHP CQIGG VPVE+V GSWRLC WA  YVSTGRVVQ+ITHN RHN A QK   KKRA K  VS V
Sbjct:  389 GESVVGGAPSNGAAARLRKHIPDPPNPAKARGFCFGIGADGVGLAEKLKQLFAGENGFGKGPITTKGCHTPKFGEAGVTKSDRFSWQLDEDGCLILPPHNTNNPGGKHPTCQIGGTVPVEKVNGSWRLCSWALPYVSTGRVVQKITHNARHNNAPQKSRGKKRALKQGVSTV 560
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BLAST of mRNA_L-elsbetiae_contig7371.16243.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 5.730e-59
Identity = 106/171 (61.99%), Postives = 126/171 (73.68%), Query Frame = 1 
Query:    1 GATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTGGCNAPKFGEAGVTKSDRFSWKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAKQKGSDKKRAQ 513
            GA LGTGANQVGSAP++ AAA  R+ IPG  +P RA+GFCFG GADG GL  KL   FAG+NGFG GPIT GGC  P F EAGVTK  + +W+LD+HDNLILPVH+S    G HPRCQ+GG VPVE+V  SWRLC WA +Y+   R+VQ+I+ +QRHNGA  K   K R +
Sbjct:  386 GAALGTGANQVGSAPSDGAAAKMRKPIPGQLNPVRAHGFCFGFGADGVGLPQKLHDKFAGKNGFGDGPITEGGCEIPNFSEAGVTKG-KSTWQLDEHDNLILPVHSSIETEG-HPRCQLGGCVPVEKVNESWRLCHWALKYILARRIVQRISQSQRHNGAPAKSRAKGRKE 554
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BLAST of mRNA_L-elsbetiae_contig7371.16243.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 8.080e-55
Identity = 99/165 (60.00%), Postives = 116/165 (70.30%), Query Frame = 1 
Query:   19 GANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTGGCNAPKFGEAGVTKSDRFSWKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAKQKGSDKKRAQ 513
            GANQVGSAP+N AAA  R+ IPG  +P + YGFCFG GADG GL  KL   FAGENGFG GPIT GGC  P F EAGVTK +  +W+LD+HD LILPVH+ N   G HP C IGG VPVE+V  SWRLC WA +Y+   R+V ++T N RHNGA +K   K R +
Sbjct:  437 GANQVGSAPSNGAAAKVRKPIPGQRNPVKEYGFCFGFGADGVGLDQKLHDKFAGENGFGDGPITEGGCEIPNFSEAGVTKGES-TWQLDEHDYLILPVHSGNKTEG-HPACTIGGCVPVEKVNESWRLCHWALKYILNRRIVSKVTQNARHNGAGEKSRAKGRKE 599
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BLAST of mRNA_L-elsbetiae_contig7371.16243.1 vs. uniprot
Match: A0A6H5K7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M5_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.740e-49
Identity = 93/165 (56.36%), Postives = 113/165 (68.48%), Query Frame = 1 
Query:   19 GANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTGGCNAPKFGEAGVTKSDRFSWKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAKQKGSDKKRAQ 513
            GANQVGSAP++ AAA  R+ IPG  +P +A+GFCFGLGA G GLA KL   FA E+GF  GPIT GGC  P F EAGVT+  +  W+ D+HD LILPVH+     G HPR  IGG V VE+V  SWRLC W  +Y+   R+V +IT NQRHNGA +K   K+R +
Sbjct:  223 GANQVGSAPSDGAAAKMRKPIPGQLNPVKAHGFCFGLGAGGVGLAQKLYDKFASEHGFEEGPITEGGCETPNFSEAGVTEG-KSKWEHDEHDKLILPVHSGIRTDG-HPRYVIGGCVSVEKVNESWRLCHWVLKYILARRIVPKITQNQRHNGAPEKSYAKRRKE 385
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7371.16243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FLR6_ECTSI1.520e-10897.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU43_9PHAE1.580e-7371.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWV7_ECTSI5.730e-5961.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5E5_9PHAE8.080e-5560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M5_9PHAE1.740e-4956.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7371contigL-elsbetiae_contig7371:459..1262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size804
Cds size519
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.3197193-CDS-L-elsbetiae_contig7371:458..9771622816820.3197193-CDS-L-elsbetiae_contig7371:458..977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7371 459..977 +
1691683838.4104788-CDS-L-elsbetiae_contig7371:458..9771691683838.4104788-CDS-L-elsbetiae_contig7371:458..977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7371 459..977 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.3338838-UTR-L-elsbetiae_contig7371:977..12621622816820.3338838-UTR-L-elsbetiae_contig7371:977..1262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7371 978..1262 +
1691683838.4251537-UTR-L-elsbetiae_contig7371:977..12621691683838.4251537-UTR-L-elsbetiae_contig7371:977..1262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7371 978..1262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7371.16243.1prot_L-elsbetiae_contig7371.16243.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7371 459..977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7371.16243.1

>prot_L-elsbetiae_contig7371.16243.1 ID=prot_L-elsbetiae_contig7371.16243.1|Name=mRNA_L-elsbetiae_contig7371.16243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
GATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGL
AGKLKQLFAGENGFGRGPITTGGCNAPKFGEAGVTKSDRFSWKLDDHDNL
ILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQ
ITHNQRHNGAKQKGSDKKRAQK*
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mRNA from alignment at L-elsbetiae_contig7371:459..1262+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7371.16243.1 ID=mRNA_L-elsbetiae_contig7371.16243.1|Name=mRNA_L-elsbetiae_contig7371.16243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig7371:459..1262+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCGACCTTGGGAACAGGGGCGAACCAGGTGGGAAGCGCCCCCACTAA
CAGTGCAGCGGCCACCGCGCGCAGGGCCATCCCCGGCGCGCCCAGCCCTG
CTAGAGCCTATGGCTTTTGCTTTGGTTTGGGTGCGGATGGCAAGGGTCTC
GCCGGGAAGCTCAAGCAACTGTTTGCCGGTGAAAACGGTTTCGGGAGAGG
GCCAATCACCACGGGCGGGTGCAACGCACCCAAGTTCGGAGAGGCGGGAG
TGACAAAGTCCGACAGATTCTCGTGGAAGCTTGACGACCACGACAATCTC
ATCCTCCCCGTCCACAACAGCAACAGCTACGGCGGGAAGCACCCTAGGTG
CCAAATCGGAGGTGTTGTCCCCGTTGAGAGGGTCAAGGGATCGTGGCGAC
TATGCCCATGGGCGTATCGGTACGTCTCGACTGGGAGGGTCGTGCAACAG
ATCACGCACAACCAACGCCACAACGGGGCAAAACAGAAGGGCAGCGACAA
GAAGAGGGCGCAGAAGTAGTGAGTTTCCAGAGTGTAAATGATGCTTTTCA
GGAATGTAAGATACCCTCATTACTTTTATATCTGTGATAGTTACATATTG
GATGCGTCGTGAGAACCGAAGACGACGCGGTGTGTCCATTTCGAAGAGTT
TCGTCCAGGCACTAGCCGTGGCTTCTATTCATGCAGCCACAATGAATCAT
ATTCGAGCGGTAGCAATTGCTGCCGATGCCAAGTTAGAAAAACAAGCATT
GCCTGTATAGCCGTTGAACCATACACCCCGCTAGTTTTGTTCCGGACGTG
GGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7371:459..1262+

>mRNA_L-elsbetiae_contig7371.16243.1 ID=mRNA_L-elsbetiae_contig7371.16243.1|Name=mRNA_L-elsbetiae_contig7371.16243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig7371:459..1262+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCGACCTTGGGAACAGGGGCGAACCAGGTGGGAAGCGCCCCCACTAA
CAGTGCAGCGGCCACCGCGCGCAGGGCCATCCCCGGCGCGCCCAGCCCTG
CTAGAGCCTATGGCTTTTGCTTTGGTTTGGGTGCGGATGGCAAGGGTCTC
GCCGGGAAGCTCAAGCAACTGTTTGCCGGTGAAAACGGTTTCGGGAGAGG
GCCAATCACCACGGGCGGGTGCAACGCACCCAAGTTCGGAGAGGCGGGAG
TGACAAAGTCCGACAGATTCTCGTGGAAGCTTGACGACCACGACAATCTC
ATCCTCCCCGTCCACAACAGCAACAGCTACGGCGGGAAGCACCCTAGGTG
CCAAATCGGAGGTGTTGTCCCCGTTGAGAGGGTCAAGGGATCGTGGCGAC
TATGCCCATGGGCGTATCGGTACGTCTCGACTGGGAGGGTCGTGCAACAG
ATCACGCACAACCAACGCCACAACGGGGCAAAACAGAAGGGCAGCGACAA
GAAGAGGGCGCAGAAGTAGGGTGCGACCTTGGGAACAGGGGCGAACCAGG
TGGGAAGCGCCCCCACTAACAGTGCAGCGGCCACCGCGCGCAGGGCCATC
CCCGGCGCGCCCAGCCCTGCTAGAGCCTATGGCTTTTGCTTTGGTTTGGG
TGCGGATGGCAAGGGTCTCGCCGGGAAGCTCAAGCAACTGTTTGCCGGTG
AAAACGGTTTCGGGAGAGGGCCAATCACCACGGGCGGGTGCAACGCACCC
AAGTTCGGAGAGGCGGGAGTGACAAAGTCCGACAGATTCTCGTGGAAGCT
TGACGACCACGACAATCTCATCCTCCCCGTCCACAACAGCAACAGCTACG
GCGGGAAGCACCCTAGGTGCCAAATCGGAGGTGTTGTCCCCGTTGAGAGG
GTCAAGGGATCGTGGCGACTATGCCCATGGGCGTATCGGTACGTCTCGAC
TGGGAGGGTCGTGCAACAGATCACGCACAACCAACGCCACAACGGGGCAA
AACAGAAGGGCAGCGACAAGAAGAGGGCGCAGAAGTAG
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