mRNA_L-elsbetiae_contig7365.16237.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7365.16237.1
Unique NamemRNA_L-elsbetiae_contig7365.16237.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Match: A0A6H5K0S2_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0S2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.830e-9
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   61 CTMVFEDYMAALYLAKNPATTPNSK----QHRHVRERVANAEIKIVHVPSSYHHADFLTK 228
            C  VFED   A+ LA+NP +  NSK    +H  +RE V   EI ++HVPS Y HA FLTK
Sbjct:    9 CIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQHAYFLTK 68
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BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Match: A0A6H5LE52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE52_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.160e-9
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   61 CTMVFEDYMAALYLAKNPATTPNSKQ----HRHVRERVANAEIKIVHVPSSYHHADFLTK--PQGSF 243
            C  VFED   A+ LA+NP +  NSK     H  +RE V   EI ++HVPS Y HADFLTK  P+ +F
Sbjct: 1514 CIPVFEDNQGAIQLAQNPISNSNSKHIDVTHHFLRELVERKEISVIHVPSPYQHADFLTKSLPKDAF 1580
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BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Match: A0A6H5K039_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K039_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.390e-9
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   61 CTMVFEDYMAALYLAKNPATTPNSK----QHRHVRERVANAEIKIVHVPSSYHHADFLTK 228
            C  VFED   A+ LA+NP +  NSK    +H  +RE V   EI ++HVPS Y  ADFLTK
Sbjct:    9 CIPVFEDIQEAIQLAQNPISNSNSKHIVVRHHCLRELVERNEISVIHVPSPYQRADFLTK 68
[Close]
BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Match: A0A6H5JHP4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.120e-9
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   61 CTMVFEDYMAALYLAKNPATTPNSK----QHRHVRERVANAEIKIVHVPSSYHHADFLTK 228
            C  +FED   A+ LA+NP +  NSK    +H  +RE V   EI ++HVPS YH ADFLTK
Sbjct:  483 CIPIFEDNQRAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYHRADFLTK 542
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BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.570e-9
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   61 CTMVFEDYMAALYLAKNPATTPNSK----QHRHVRERVANAEIKIVHVPSSYHHADFLTK--PQGSF 243
            C  VFED   A+ LA+NP +  NSK    +H  +RE V   EI ++HVPS Y  ADFLTK  P+ +F
Sbjct:  134 CIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 200
[Close]
BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.360e-8
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   61 CTMVFEDYMAALYLAKNPATTPNSK----QHRHVRERVANAEIKIVHVPSSYHHADFLTK 228
            C  VFED   A+ LA+NP +  NSK    +H  +RE V   EI ++HVPS Y  ADFLTK
Sbjct:  139 CIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTK 198
[Close]
BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.580e-8
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   61 CTMVFEDYMAALYLAKNPATTPNSK----QHRHVRERVANAEIKIVHVPSSYHHADFLTK--PQGSF 243
            C  VFED   A+ LA+NP +  NSK    +H  +RE V   EI ++HVPS Y  ADFLTK  P+ +F
Sbjct:  274 CIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRLPKDAF 340
[Close]
BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.730e-8
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   61 CTMVFEDYMAALYLAKNPATTPNSK----QHRHVRERVANAEIKIVHVPSSYHHADFLTK--PQGSF 243
            C  VFED   A+ LA+NP +  NSK    +H  +RE V   EI ++HVPS Y  ADFLTK  P+ +F
Sbjct:  385 CIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 451
[Close]
BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Match: A0A6H5K2E9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.840e-8
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   61 CTMVFEDYMAALYLAKNPATTPNSK----QHRHVRERVANAEIKIVHVPSSYHHADFLTK--PQGSF 243
            C  VFED   A+ LA+NP +  NSK    +H  +RE V   EI ++HVPS Y  ADFLTK  P+ +F
Sbjct:  779 CIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSFPKDAF 845
[Close]
BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.910e-8
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   61 CTMVFEDYMAALYLAKNPATTPNSK----QHRHVRERVANAEIKIVHVPSSYHHADFLTK--PQGSF 243
            C  VFED   A+ LA+NP +  NSK    +H  +RE V   EI ++HVPS Y  ADFLTK  P+ +F
Sbjct: 1721 CIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 1787
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7365.16237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0S2_9PHAE1.830e-950.00Uncharacterized protein n=6 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LE52_9PHAE2.160e-949.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K039_9PHAE3.390e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP4_9PHAE5.120e-950.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUW6_9PHAE6.570e-947.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE1.360e-850.00Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPF9_9PHAE1.580e-847.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG2_9PHAE1.730e-847.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2E9_9PHAE1.840e-847.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE1.910e-847.76Integrase catalytic domain-containing protein n=18... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7365contigL-elsbetiae_contig7365:6745..7081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816819.8968213-CDS-L-elsbetiae_contig7365:6744..70801622816819.8968213-CDS-L-elsbetiae_contig7365:6744..7080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7365 6745..7080 +
1691683838.1342943-CDS-L-elsbetiae_contig7365:6744..70801691683838.1342943-CDS-L-elsbetiae_contig7365:6744..7080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7365 6745..7080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7365.16237.1prot_L-elsbetiae_contig7365.16237.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7365 6745..7080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7365.16237.1

>prot_L-elsbetiae_contig7365.16237.1 ID=prot_L-elsbetiae_contig7365.16237.1|Name=mRNA_L-elsbetiae_contig7365.16237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
GVEGGDLSEFFVEFSDRDEGCTMVFEDYMAALYLAKNPATTPNSKQHRHV
RERVANAEIKIVHVPSSYHHADFLTKPQGSFLRAPECCHEHSVILLALSL
FRRRHLFYHFSG
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mRNA from alignment at L-elsbetiae_contig7365:6745..7081+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7365.16237.1 ID=mRNA_L-elsbetiae_contig7365.16237.1|Name=mRNA_L-elsbetiae_contig7365.16237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=337bp|location=Sequence derived from alignment at L-elsbetiae_contig7365:6745..7081+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTTGAAGGAGGTGATCTTTCTGAGTTTTTTGTGGAGTTTTCGGACAG
AGATGAAGGGTGTACGATGGTGTTCGAGGACTACATGGCTGCTCTGTACT
TGGCTAAGAACCCGGCCACTACGCCGAACTCGAAGCAACATCGACATGTC
CGGGAGCGTGTAGCCAACGCGGAAATCAAGATTGTTCACGTGCCGTCCTC
CTACCATCATGCGGACTTCCTTACCAAGCCACAAGGAAGCTTTCTACGTG
CACCGGAATGTTGTCATGAACATTCTGTGATTTTGTTGGCCTTATCCTTG
TTTCGCAGGCGGCATTTGTTTTATCATTTTTCTGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7365:6745..7081+

>mRNA_L-elsbetiae_contig7365.16237.1 ID=mRNA_L-elsbetiae_contig7365.16237.1|Name=mRNA_L-elsbetiae_contig7365.16237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig7365:6745..7081+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTTGAAGGAGGTGATCTTTCTGAGTTTTTTGTGGAGTTTTCGGACAG
AGATGAAGGGTGTACGATGGTGTTCGAGGACTACATGGCTGCTCTGTACT
TGGCTAAGAACCCGGCCACTACGCCGAACTCGAAGCAACATCGACATGTC
CGGGAGCGTGTAGCCAACGCGGAAATCAAGATTGTTCACGTGCCGTCCTC
CTACCATCATGCGGACTTCCTTACCAAGCCACAAGGAAGCTTTCTACGTG
CACCGGAATGTTGTCATGAACATTCTGTGATTTTGTTGGCCTTATCCTTG
TTTCGCAGGCGGCATTTGTTTTATCATTTTTCTGGTGGGGTTGAAGGAGG
TGATCTTTCTGAGTTTTTTGTGGAGTTTTCGGACAGAGATGAAGGGTGTA
CGATGGTGTTCGAGGACTACATGGCTGCTCTGTACTTGGCTAAGAACCCG
GCCACTACGCCGAACTCGAAGCAACATCGACATGTCCGGGAGCGTGTAGC
CAACGCGGAAATCAAGATTGTTCACGTGCCGTCCTCCTACCATCATGCGG
ACTTCCTTACCAAGCCACAAGGAAGCTTTCTACGTGCACCGGAATGTTGT
CATGAACATTCTGTGATTTTGTTGGCCTTATCCTTGTTTCGCAGGCGGCA
TTTGTTTTATCATTTTTCTGGT
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