mRNA_L-elsbetiae_contig7357.16228.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7357.16228.1
Unique NamemRNA_L-elsbetiae_contig7357.16228.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7357.16228.1 vs. uniprot
Match: D8LQN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN1_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.690e-18
Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:   70 RRRSNQDDQSNDSDS-----------------AKGGSSLTGGSVRGEEASRE-EGDENTLPSDAP-GSVQTGGSDARYVARQRWIWAFGRVCQLVRRRKRKQFEIMSQRATD 348
            RRRSNQDDQS+ S+S                 +K  SS+ G SV GEEA    EG++    + +P  S+ +G  D+R +ARQRWIWAFGR+CQLVRRRKRKQFEIMSQRATD
Sbjct:  309 RRRSNQDDQSDGSNSKLNSARAEEGRNDVMVVSKQESSVGGESVLGEEAEVPGEGNDFVKTAFSPQASIDSGVLDSRLIARQRWIWAFGRICQLVRRRKRKQFEIMSQRATD 420
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BLAST of mRNA_L-elsbetiae_contig7357.16228.1 vs. uniprot
Match: A0A6H5LPN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPN1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-10
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:  145 SVRGEEASRE-EGDENTLPSDAP-GSVQTGGSDARYVARQRWIWAFGRVCQLVRRRKRKQFEIMSQRATD 348
            SV GEEA    EG++    + +P  S+ +G  D+R    QRWIWAFGR+CQLVRRRKRKQFEIMSQRATD
Sbjct:  339 SVLGEEAEGPGEGNDFVKTAFSPQASIDSGVLDSR----QRWIWAFGRICQLVRRRKRKQFEIMSQRATD 404
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7357.16228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQN1_ECTSI5.690e-1854.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LPN1_9PHAE1.100e-1061.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7357contigL-elsbetiae_contig7357:8857..9605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.905636-CDS-L-elsbetiae_contig7357:8856..90981622816818.905636-CDS-L-elsbetiae_contig7357:8856..9098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 8857..9098 +
1691683837.332976-CDS-L-elsbetiae_contig7357:8856..90981691683837.332976-CDS-L-elsbetiae_contig7357:8856..9098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 8857..9098 +
1622816818.9196544-CDS-L-elsbetiae_contig7357:9497..96031622816818.9196544-CDS-L-elsbetiae_contig7357:9497..9603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 9498..9603 +
1691683837.347052-CDS-L-elsbetiae_contig7357:9497..96031691683837.347052-CDS-L-elsbetiae_contig7357:9497..9603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 9498..9603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7357.16228.1prot_L-elsbetiae_contig7357.16228.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7357 8857..9603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7357.16228.1

>prot_L-elsbetiae_contig7357.16228.1 ID=prot_L-elsbetiae_contig7357.16228.1|Name=mRNA_L-elsbetiae_contig7357.16228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
TAVTATNGPAEETFAATSPTNGSRRRSNQDDQSNDSDSAKGGSSLTGGSV
RGEEASREEGDENTLPSDAPGSVQTGGSDARYVARQRWIWAFGRVCQLVR
RRKRKQFEIMSQRATD
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mRNA from alignment at L-elsbetiae_contig7357:8857..9605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7357.16228.1 ID=mRNA_L-elsbetiae_contig7357.16228.1|Name=mRNA_L-elsbetiae_contig7357.16228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=749bp|location=Sequence derived from alignment at L-elsbetiae_contig7357:8857..9605+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCGGTAACTGCGACGAATGGACCAGCAGAGGAAACTTTCGCAGCAAC
ATCACCAACGAACGGCAGCCGCAGAAGAAGTAACCAGGACGACCAGAGCA
ACGACAGTGACAGCGCCAAGGGCGGCAGCTCACTCACCGGAGGCAGCGTT
CGGGGAGAAGAAGCAAGTCGAGAAGAGGGGGATGAGAACACGCTGCCGTC
CGACGCCCCAGGATCGGTACAGACAGGGGGGTCGGATGCGAGGTGCGCTA
CATGTAGAGACAGATTAACACTGCTGAATCATTTGGGTTTCCCTCCCGCG
GGGGGGTTAAGTGCCCCGTATTGTTCTCTCGAGGGAAACCGTGAGTAGAC
AGTGGTATGTAGGTGCAGTGTACGTTTTATTGTCGATTGATCGGGGAGAT
GGTTTTAAAACTGGAGTAACCCGAGATATCAAAACTGGGGCATGTCACAC
ATTATCTACACGACTACGGTAGACAGCTGCACGATCTATAGCTCCCGAAG
ATTACCTCCACCACAAGCGCAATATGCCTCCAGACTAATACTTACTCTCC
CGTTAATCGAAGTTATTTGTCGAACGTACTGCTATGTTAGTCCGCCATGC
TCAGGCGTGGTGGTTGTTTTTCTCTAATTTTTCCTCCCAAGGTATGTGGC
TCGGCAGCGCTGGATCTGGGCATTCGGACGAGTTTGCCAGCTTGTTCGAC
GCAGGAAGAGGAAGCAGTTCGAGATCATGTCCCAACGGGCTACCGACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7357:8857..9605+

>mRNA_L-elsbetiae_contig7357.16228.1 ID=mRNA_L-elsbetiae_contig7357.16228.1|Name=mRNA_L-elsbetiae_contig7357.16228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig7357:8857..9605+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCGGTAACTGCGACGAATGGACCAGCAGAGGAAACTTTCGCAGCAAC
ATCACCAACGAACGGCAGCCGCAGAAGAAGTAACCAGGACGACCAGAGCA
ACGACAGTGACAGCGCCAAGGGCGGCAGCTCACTCACCGGAGGCAGCGTT
CGGGGAGAAGAAGCAAGTCGAGAAGAGGGGGATGAGAACACGCTGCCGTC
CGACGCCCCAGGATCGGTACAGACAGGGGGGTCGGATGCGAGACAGCGGT
AACTGCGACGAATGGACCAGCAGAGGAAACTTTCGCAGCAACATCACCAA
CGAACGGCAGCCGCAGAAGAAGTAACCAGGACGACCAGAGCAACGACAGT
GACAGCGCCAAGGGCGGCAGCTCACTCACCGGAGGCAGCGTTCGGGGAGA
AGAAGCAAGTCGAGAAGAGGGGGATGAGAACACGCTGCCGTCCGACGCCC
CAGGATCGGTACAGACAGGGGGGTCGGATGCGAGGTATGTGGCTCGGCAG
CGCTGGATCTGGGCATTCGGACGAGTTTGCCAGCTTGTTCGACGCAGGAA
GAGGAAGCAGTTCGAGATCATGTCCCAACGGGCTACCGACGTATGTGGCT
CGGCAGCGCTGGATCTGGGCATTCGGACGAGTTTGCCAGCTTGTTCGACG
CAGGAAGAGGAAGCAGTTCGAGATCATGTCCCAACGGGCTACCGAC
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