mRNA_L-elsbetiae_contig7357.16227.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7357.16227.1
Unique NamemRNA_L-elsbetiae_contig7357.16227.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Match: D8LQM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQM8_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 6.750e-129
Identity = 226/468 (48.29%), Postives = 283/468 (60.47%), Query Frame = 2 
Query:   83 SFSALPTGPQSTVVLYLTEADLAQLLGTHAEMMMKESEIASDAFWRGRCCNTFGRHVGRIQGLGKDAFRAFLTAKAKRCLPHYYQGGR------FHRFRCVHQLLTKCLGASSQDMDDEKPSNTLVPSPCAVTLGE---GGTDWE-----GKLRQTECGCVFWSKCYWSSEPSAVADKDEWIQYDLVDG-LAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTHPQINGGEKPYYESPRFRVDGSMKRQQFDLPQPILSLGGRAKVVLLGMAQRQTLPETVGETANHYHVCISYASLMGTVLLSCGLAKRAVISLADRRNDGSSSGTGGGEGVGGRSAVEGGSIEGGESWVQVQTARKKQQDLRLQWVVEVFVYPVDPMDRVSRQAGKGEGEAICDSPRHLFKIKAFSDTPCLQFVKLYAPLVKSKTAGDVRLMLASDSGGEALPVGEGVVLGSFAVEGRLDLVDATR 1441
            +FS LP GP  TVVLYLT AD+AQL+GT+ EM    S + S  FWR RCC TFGRHV  I+ +GK+ F AF  AK            R      F R     QLL+  +GASSQD +DE PS+TL  S CA  L +   G    E     GK  Q++CGCV+  KCYWSSEPS  ADK+EW+ YD+ +  +AV  SF+LTPYTSFWQP+QPTYNP+EACFQL HPQI+GG+ PYYESPRF VD  MKRQQF+LP+PI+S GGR ++ LLGMAQRQTLPE+VG TANHYH CISYA+L GT LLSC +A       +        +  G G G            +GG +   +    K    LR++W V V VYP +  D  +     GE + +        K+K F DTPCL+ ++LY+ +         RL+LA   GG  LP  +G ++G FAV G+L LVD +R
Sbjct:    6 TFSTLPLGPLGTVVLYLTVADMAQLIGTNKEM--NTSALDSPEFWRERCCGTFGRHVDYIESVGKNEFLAFHMAKVLMLPGESKTNSRLPGTEAFERSVWTRQLLSFSVGASSQDRNDEGPSHTLFESRCARMLEDMRCGKMPREAVASIGKRCQSDCGCVWLDKCYWSSEPSPTADKEEWLDYDMQENTVAVAVSFMLTPYTSFWQPEQPTYNPIEACFQLMHPQIDGGKTPYYESPRFFVDPHMKRQQFNLPRPIVSFGGRVRIRLLGMAQRQTLPESVGATANHYHTCISYAALCGTFLLSCSIANHPDGPASRSAKIPPVATIGKGRGXXXXXXXXEDVDQGGGATSPINRIEKNNDKLRMRWAVLVHVYPANKSDNEAALDNNGEKKPL--------KVKVFGDTPCLELLELYSKMYFPDEER-ARLVLA---GGMELPAEDGKLVGEFAVHGKLSLVDPSR 459
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BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Match: A0A6H5L798_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L798_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 4.730e-71
Identity = 126/235 (53.62%), Postives = 156/235 (66.38%), Query Frame = 2 
Query:   83 SFSALPTGPQSTVVLYLTEADLAQLLGTHAEMMMKESEIASDAFWRGRCCNTFGRHVGRIQGLGKDAFRAFLTAKAKRCLP------HYYQGGR-FHRFRCVHQLLTKCLGASSQDMDDEKPSNTLVPSPCAVTLGEGGTDWE--------GKLRQTECGCVFWSKCYWSSEPSAVADKDEWIQYDLVDG-LAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTHPQINGGEKPY 739
            +FS LP GP +TVVLYLT AD+AQL+GT+ EM    S + S  FWR RCC TFGRHV  I+ +GK+ FRAF  AK    LP       +  G   F R     QLL+  +GASSQD +DE PS+TL  S CA  L +   +          GK  Q++CGCV+  KCYWSSEPS  ADK+EW+ YD+ +  +AVV SF+LTPYTSFWQP+QPTYNP+EACFQL HPQ++GG+ PY
Sbjct:    6 TFSTLPLGPLATVVLYLTVADMAQLIGTNKEM--NTSALDSPEFWRERCCGTFGRHVDHIESVGKNEFRAFHMAKML-MLPGESKTNSWLSGTEAFERDVWTRQLLSSSVGASSQDRNDEGPSHTLFESRCARMLQDMPCERMPREALASIGKRCQSDCGCVWLDKCYWSSEPSPTADKEEWLDYDMQENTVAVVVSFMLTPYTSFWQPEQPTYNPIEACFQLMHPQVDGGKTPY 237
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BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Match: A0A835ZDH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 8.660e-33
Identity = 83/221 (37.56%), Postives = 112/221 (50.68%), Query Frame = 2 
Query:  374 LLTKCLGASSQDMDDEKPSNTLVPSPC----AVTLGEGGTDWEGKLRQ-----------------------TECGCVFWSKCYWSSEPSAVADKD-EWIQYDLVDGLAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTHPQINGGEKPYYESPRFRVDGSMKRQQFDLPQPILSLGG-RAKVVLLGMAQRQTLPETVGETANHYHVCISYASLMGTVLLS 949
            L+   +G SSQD  DE PSNTL PS C      T     TD   KL+Q                       T CGC     CYWSS  S   ++  + I Y L +GL+VV+ F +TPY +FWQP+ P Y P  A     HP +  G +PYY S  F +  +M+ Q F+LP+P + LGG  A++ L G  QRQTL    G   +H++ C+S+ ++ G  L S
Sbjct:  112 LIKAAIGCSSQDQQDECPSNTLAPSRCYREMLRTHHASSTDLS-KLQQQAVFAPRYTVLDQLPTSASVHCQTRCGCALGLPCYWSSSSSDNGEEARDHISYTLKEGLSVVTKFAVTPYQAFWQPESPAYAPTTASLAFYHPSL--GVEPYYTSVAFAIKPAMQLQTFELPKPAIFLGGGEARLELAGKQQRQTLGPDAGVMHDHFYTCLSFVAIYGASLSS 329
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BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Match: A0A2P2KVL4_RHIMU (Uncharacterized protein MANES_01G261800 n=4 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KVL4_RHIMU)

HSP 1 Score: 74.7 bits (182), Expect = 9.840e-11
Identity = 59/213 (27.70%), Postives = 91/213 (42.72%), Query Frame = 2 
Query:  362 CVHQLLTKC-LGASSQDMDDEKP----SNTLVPSPCAVTLGEGGTDWEGKLRQTECGCVFWSKCYWSSEPSAVADKDEWIQYDLVDGLAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTHPQI-----------NGGEKPY---YESPRFRVDGSMKRQQFDLPQPILSLGGRAKVVLLGMAQRQTLPETVGETANHYHVCISYASLMGTVL 943
            C    L +C L A S    D  P     NTLVP           TD  G+              YWSS+  +     E + Y LV  + V++   + P+ +++Q   P Y+    CF++ HP+            N  +  +   Y SP F +      Q+F+LP+P++ +GG   V LLG  QRQ       E  N +++C+S+  +MG  L
Sbjct:  104 CTSFTLQECVLDAISASSTDNSPLESIHNTLVP-----------TDRIGRRAS-----------YWSSKGQSNPMVPEMLIYKLVADVCVITEISIRPFQAYFQLGMPIYSAKSVCFRMGHPKFPMDEAMGEPSDNCADNNFVWTYISPEFPMVQENCLQKFELPEPVICIGGILMVELLGRVQRQ-------EIDNLFYICVSHVQVMGRPL 287
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BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Match: A0A6I9U4H5_SESIN (F-box protein At4g00755 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9U4H5_SESIN)

HSP 1 Score: 73.9 bits (180), Expect = 1.890e-10
Identity = 55/212 (25.94%), Postives = 90/212 (42.45%), Query Frame = 2 
Query:  362 CVHQLLTKCLGASSQD-MDDEKPSNTLVPSPCAVTLGEGGTDWEGKLRQTECGCVFWSKCYWSSEPSAVADKDEWIQYDLVDGLAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTHP----QINGG------EKPY-------YESPRFRVDGSMKRQQFDLPQPILSLGGRAKVVLLGMAQRQTLPETVGETANHYHVCISYASLMGTVL 943
            C    +   + ASS D   DE   NTL P    +                          YWSS+  +  +  E + Y L  G+ V++   + P+ +F+QPD+P Y+     F++ HP    +I         ++P        Y SP F +    + Q F+LP+P+L +GG  ++ LLG  QRQ       E    +++C+ Y  ++G  L
Sbjct:  114 CPKDCIANAISASSTDNYPDESVVNTLNPRDRFIRRAS----------------------YWSSKGQSNPEVPEMLIYKLRAGIWVITEIDIQPFEAFFQPDKPIYSAKFVRFRMGHPKSPREIGSDLHHLPLQRPADDKFVWTYTSPEFPMVQENRLQPFELPEPVLCVGGYLQIELLGRVQRQ-------EMDGLFYICVCYVRVLGRPL 296
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BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Match: UPI001BF7731C (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF7731C)

HSP 1 Score: 71.6 bits (174), Expect = 9.260e-10
Identity = 43/152 (28.29%), Postives = 73/152 (48.03%), Query Frame = 2 
Query:  539 YWSSEPSAVADKDEWIQYDLVDGLAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTHPQ--------INGGEKP---------YYESPRFRVDGSMKRQQFDLPQPILSLGGRAKVVLLGMAQRQTLPETVGETANHYHVCISYASLMGTVL 943
            YWSS+  +  +  E + Y L     V++   ++P+ +++Q  +P Y+  E  F++ HP+        + G   P          Y S  F +      Q F+LP+P+L +GG  ++ LLG  QRQ       ET   ++ C+SY  +MG +L
Sbjct:  138 YWSSKGKSNPEVPERLTYKLAGDFCVITEINISPFQAYFQTGEPIYSAREVRFRMGHPKGPADVGNDLLGDLSPGSADDKFIWTYTSQEFPMAQESGLQNFELPEPVLCVGGILQIELLGRVQRQ-------ETDGLFYTCVSYVQVMGRLL 282
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BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Match: A0A0V0I6R8_SOLCH (Putative F-box protein-like n=5 Tax=Solanum TaxID=4107 RepID=A0A0V0I6R8_SOLCH)

HSP 1 Score: 70.5 bits (171), Expect = 2.490e-9
Identity = 51/211 (24.17%), Postives = 89/211 (42.18%), Query Frame = 2 
Query:  362 CVHQLLTKCLGASSQD-MDDEKPSNTLVPSPCAVTLGEGGTDWEGKLRQTECGCVFWSKCYWSSEPSAVADKDEWIQYDLVDGLAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTHPQINGGEKPY----------------YESPRFRVDGSMKRQQFDLPQPILSLGGRAKVVLLGMAQRQTLPETVGETANHYHVCISYASLMGTVL 943
            C +  +   + ASS D   DE   NTL+P    +                          YWSS+  +  +  E + Y L   L V++   + P+ +++QP +P Y+     F+L HP+ +  E                   Y S  F +      Q+F+LP+P+L +GG  ++ LLG  QRQ + +        +++C+S+  ++G  L
Sbjct:  109 CRNDCIGYAVSASSTDNYPDESIVNTLIPMDKYLNRPS----------------------YWSSKGHSDPNAPETLIYKLKADLCVITEVFMQPFEAYFQPGKPIYSAKSVRFRLGHPKSSKDESDLLKMPQQQPADDKFIWTYTSEEFPMTQEKCFQRFNLPEPVLCVGGYLQIQLLGRVQRQEMDDL-------FYICVSHVRVVGRPL 290
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BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Match: A0A6A6MTS4_HEVBR (Uncharacterized protein n=3 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MTS4_HEVBR)

HSP 1 Score: 68.6 bits (166), Expect = 6.280e-9
Identity = 41/149 (27.52%), Postives = 73/149 (48.99%), Query Frame = 2 
Query:  539 YWSSEPSAVADKDEWIQYDLVDGLAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTHPQI-----------NGGEKPY---YESPRFRVDGSMKRQQFDLPQPILSLGGRAKVVLLGMAQRQTLPETVGETANHYHVCISYASLMGTVL 943
            YWSS+  +     E + Y LV  + V++   + P+ +F+Q   P Y+     F++ HP+            N  +  +   Y SP F +    + Q+F+LP+P+L +GG  +V LLG  Q+Q       E    +++C+S+  ++G  L
Sbjct:   92 YWSSKGQSNPAVPETLTYKLVADICVITEISVRPFQAFFQWGSPIYSAKSVRFRMGHPKAPVDDPMGEPCDNFADDNFVWTYTSPEFAMAQENRLQKFELPEPVLCIGGILQVELLGRVQKQ-------EMDGLFYICVSHVQVVGRPL 233
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BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Match: B9RDK7_RICCO (Uncharacterized protein n=1 Tax=Ricinus communis TaxID=3988 RepID=B9RDK7_RICCO)

HSP 1 Score: 68.9 bits (167), Expect = 7.070e-9
Identity = 41/148 (27.70%), Postives = 74/148 (50.00%), Query Frame = 2 
Query:  539 YWSSEPSAVADKDEWIQYDLVDGLAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTH---PQINGGEKPY----------YESPRFRVDGSMKRQQFDLPQPILSLGGRAKVVLLGMAQRQTLPETVGETANHYHVCISYASLMGTVL 943
            YWSS+  +     E + Y LV  + +++   + P+ +F+QP  P Y+     F++ H   P+ +   +P           Y SP F +    + Q+F+LP+P+L +GG  +V LLG  Q+Q       E    +++C+S+  ++G  L
Sbjct:  145 YWSSKGQSNPAVPETLIYKLVADICLITEISVHPFQAFFQPGTPIYSANSVRFRMGHLKAPEDDPMSEPCDNCADDVVWTYTSPEFAMAQENRLQKFELPEPVLCIGGILQVELLGRVQKQ-------EMDGLFYICVSHVQVLGRPL 285
[Close]
BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Match: A0A2C9WPC8_MANES (F-box domain-containing protein n=2 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9WPC8_MANES)

HSP 1 Score: 68.6 bits (166), Expect = 9.550e-9
Identity = 41/149 (27.52%), Postives = 73/149 (48.99%), Query Frame = 2 
Query:  539 YWSSEPSAVADKDEWIQYDLVDGLAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTHPQI-----------NGGEKPY---YESPRFRVDGSMKRQQFDLPQPILSLGGRAKVVLLGMAQRQTLPETVGETANHYHVCISYASLMGTVL 943
            YWSS+  +     E + Y LV  + V++   + P+ +F+Q   P Y+     F++ HP+            N  +  +   Y SP F +    + Q+F+LP+P+L +GG  +V LLG  QRQ +          +++C+S+  ++G  L
Sbjct:  146 YWSSKGQSNPAVAETLTYKLVADICVITEISVRPFQAFFQLGSPIYSAKSVRFRMGHPKAAVDDPMGEPSDNCADDNFIWTYTSPEFAMVQENRLQKFELPEPVLCIGGILQVELLGRVQRQDMDGL-------FYICVSHVQVIGRPL 287
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7357.16227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LQM8_ECTSI6.750e-12948.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L798_9PHAE4.730e-7153.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDH8_9STRA8.660e-3337.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2P2KVL4_RHIMU9.840e-1127.70Uncharacterized protein MANES_01G261800 n=4 Tax=Rh... [more]
A0A6I9U4H5_SESIN1.890e-1025.94F-box protein At4g00755 n=1 Tax=Sesamum indicum Ta... [more]
UPI001BF7731C9.260e-1028.29Uncharacterized protein n=2 Tax=Carya illinoinensi... [more]
A0A0V0I6R8_SOLCH2.490e-924.17Putative F-box protein-like n=5 Tax=Solanum TaxID=... [more]
A0A6A6MTS4_HEVBR6.280e-927.52Uncharacterized protein n=3 Tax=Hevea brasiliensis... [more]
B9RDK7_RICCO7.070e-927.70Uncharacterized protein n=1 Tax=Ricinus communis T... [more]
A0A2C9WPC8_MANES9.550e-927.52F-box domain-containing protein n=2 Tax=Manihot es... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7357contigL-elsbetiae_contig7357:201..4718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog42099.EPrPV00000016040
Hectar predicted targeting categoryother localisation
EggNOG free text desc.F-box protein. Source PGD
EggNOG OGs1MBKR@121069,28J3Z@1,2QRFZ@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_006260.1
Exons6
Model size1745
Cds size1449
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7357.16227.1prot_L-elsbetiae_contig7357.16227.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7357 205..4426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.7838619-UTR-L-elsbetiae_contig7357:200..2041622816818.7838619-UTR-L-elsbetiae_contig7357:200..204Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7357 201..204 +
1691683837.2297182-UTR-L-elsbetiae_contig7357:200..2041691683837.2297182-UTR-L-elsbetiae_contig7357:200..204Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7357 201..204 +
1622816818.8694105-UTR-L-elsbetiae_contig7357:4426..47181622816818.8694105-UTR-L-elsbetiae_contig7357:4426..4718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7357 4427..4718 +
1691683837.3205948-UTR-L-elsbetiae_contig7357:4426..47181691683837.3205948-UTR-L-elsbetiae_contig7357:4426..4718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7357 4427..4718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.7995217-CDS-L-elsbetiae_contig7357:204..4651622816818.7995217-CDS-L-elsbetiae_contig7357:204..465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 205..465 +
1691683837.2433662-CDS-L-elsbetiae_contig7357:204..4651691683837.2433662-CDS-L-elsbetiae_contig7357:204..465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 205..465 +
1622816818.8115845-CDS-L-elsbetiae_contig7357:1002..11581622816818.8115845-CDS-L-elsbetiae_contig7357:1002..1158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 1003..1158 +
1691683837.2541018-CDS-L-elsbetiae_contig7357:1002..11581691683837.2541018-CDS-L-elsbetiae_contig7357:1002..1158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 1003..1158 +
1622816818.8230596-CDS-L-elsbetiae_contig7357:1876..19681622816818.8230596-CDS-L-elsbetiae_contig7357:1876..1968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 1877..1968 +
1691683837.269535-CDS-L-elsbetiae_contig7357:1876..19681691683837.269535-CDS-L-elsbetiae_contig7357:1876..1968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 1877..1968 +
1622816818.834111-CDS-L-elsbetiae_contig7357:2497..25821622816818.834111-CDS-L-elsbetiae_contig7357:2497..2582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 2498..2582 +
1691683837.2809796-CDS-L-elsbetiae_contig7357:2497..25821691683837.2809796-CDS-L-elsbetiae_contig7357:2497..2582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 2498..2582 +
1622816818.8451202-CDS-L-elsbetiae_contig7357:3246..34261622816818.8451202-CDS-L-elsbetiae_contig7357:3246..3426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 3247..3426 +
1691683837.2933066-CDS-L-elsbetiae_contig7357:3246..34261691683837.2933066-CDS-L-elsbetiae_contig7357:3246..3426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 3247..3426 +
1622816818.8592477-CDS-L-elsbetiae_contig7357:3751..44261622816818.8592477-CDS-L-elsbetiae_contig7357:3751..4426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 3752..4426 +
1691683837.3073428-CDS-L-elsbetiae_contig7357:3751..44261691683837.3073428-CDS-L-elsbetiae_contig7357:3751..4426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7357 3752..4426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7357.16227.1

>prot_L-elsbetiae_contig7357.16227.1 ID=prot_L-elsbetiae_contig7357.16227.1|Name=mRNA_L-elsbetiae_contig7357.16227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=483bp
MEAFGHPPPTPKLAPMPTPPPPPSIFSFSALPTGPQSTVVLYLTEADLAQ
LLGTHAEMMMKESEIASDAFWRGRCCNTFGRHVGRIQGLGKDAFRAFLTA
KAKRCLPHYYQGGRFHRFRCVHQLLTKCLGASSQDMDDEKPSNTLVPSPC
AVTLGEGGTDWEGKLRQTECGCVFWSKCYWSSEPSAVADKDEWIQYDLVD
GLAVVSSFVLTPYTSFWQPDQPTYNPVEACFQLTHPQINGGEKPYYESPR
FRVDGSMKRQQFDLPQPILSLGGRAKVVLLGMAQRQTLPETVGETANHYH
VCISYASLMGTVLLSCGLAKRAVISLADRRNDGSSSGTGGGEGVGGRSAV
EGGSIEGGESWVQVQTARKKQQDLRLQWVVEVFVYPVDPMDRVSRQAGKG
EGEAICDSPRHLFKIKAFSDTPCLQFVKLYAPLVKSKTAGDVRLMLASDS
GGEALPVGEGVVLGSFAVEGRLDLVDATRNQP*
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mRNA from alignment at L-elsbetiae_contig7357:201..4718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7357.16227.1 ID=mRNA_L-elsbetiae_contig7357.16227.1|Name=mRNA_L-elsbetiae_contig7357.16227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4518bp|location=Sequence derived from alignment at L-elsbetiae_contig7357:201..4718+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTATGGAGGCGTTTGGCCACCCCCCGCCAACCCCGAAACTGGCGCCGA
TGCCAACGCCGCCGCCGCCTCCGTCGATCTTTTCCTTCTCGGCGCTGCCC
ACGGGCCCGCAGTCGACGGTGGTGCTGTACCTCACGGAGGCCGACTTGGC
GCAGCTTCTTGGCACGCACGCGGAGATGATGATGAAGGAGAGCGAGATCG
CCTCGGACGCGTTCTGGCGAGGCCGTTGCTGCAATACTTTCGGGCGGCAT
GTGGGTCGCATCCAGGTAAAATAACGCGTGCCTGATGTTATGCACGACCT
ATCTGCGTGTGTGTCCAGCGTTCATGTTCTCATTACACTGCTGTTTACAT
AGATCCCCACTTATGTTGACGTTTCAACAGTGCCTGGCGAAATGCGTGCG
AGTTGTGGCCGCTAAATACGGCGTAACATCAGGGTGAGATCCTCCTTTTT
TCGGTGTCAAAAGGCCTCGAATCCTCGCTGGTCTGGTGGTATCTATCTTA
TGCCCCAAAAGAAAGAACGTTGGGCTCGTGGCGATGCCCGGGACGAAGGG
TTAAGTATCTGCCATCTTGATACACGCCCTTTCTCATGTCTCATGTCTCA
CGCTCCTTGGTATGGGTTGATGCCATGCCATGCCATAGCATGCGTAAAAC
CGCCCGCTTCACATATATACGTATGCGTTTTGCTGTCGGTCGGTCCGTGT
CATCTCTGCAGATGAACATCTCTGTGGCATCCCAACGATATCTCTACGAC
ACCTCTTTGATAAACCTGTGTGTGTACCTATACTGCCGATCCACCGTTAC
AGGGCCTTGGCAAGGACGCGTTTCGGGCGTTTCTGACGGCCAAAGCCAAA
CGGTGCCTGCCACATTACTACCAGGGTGGGCGTTTCCACCGGTTTAGGTG
TGTCCATCAGCTCCTCACCAAGTGCTTGGGCGCTTCGAGCCAGGACATGG
ACGACGAGGTTTGTACGGTAGCATGTATGTATGTATGTACATAAGGATGC
AGATAGAAGTGGGTAGTCAAGCGAGGAGAGCGAGCTTCGAAGTAGCGACA
AGTGTAGATCCAGTCGATGCCTCGCCGTTGATTGCGTTGTTTGGTTGGAG
CCAAGGAAGAGTACTGCTGCGATTGTAGTGCCAGTGGTGATCAAAATCTG
AACACATGAGGGAATCCTATCCATCCCATCGATGCCGGGTCCAGTGGCTG
CTGCGCGATATTTTGCAGTATGGACATACGCCCTAAGGGTGTCCAGTGAT
GTCCCCAATGTACTACTGTTGCCACGCCACCCGGTACGGTGGGCTTTTCG
AACGACCCCCTGATGAGACGTCATAAAAAAGTTGACGAGTGGATGCAGTA
GTCCCATGTAAAGTGAGGGCCCCCGGAAGAACACGCAGCATCAGCGCGCT
AGACGCCGAAATGTTGGCTTATAGCAGTGTCGCTGACTTTGGAATGTTCA
AAGATGGCGTGTCTCTGTCTCTACCATCTGTCTCAAACGAGACGGAAAAT
GCCAATGACAAGAGTGAAGCCAATGACGGGATCCGACTGAACCAATCCCT
TTCGGTGACGCCTCTTCTCTTCTAAATACACGCTATCTACTATTTCGCCT
GCTTTTCGGTTGTCGCCAACCAACCCTCTGTTGGCTTTGCTACTGGCTGG
TGCTGTAATGGCCTCCTTCCGCACAGAAACCGTCCAACACGCTGGTCCCG
TCGCCGTGTGCGGTGACGCTCGGCGAAGGGGGCACTGATTGGGAAGGAAA
GCTGCGCCAGACCGAATGGTGAGAAAGCAAGGCATTTTCGTTGTTCATCA
GTCGAACCACTCCAAGATCCCCCCCCCCCCCCCCCACCCCTTCACGACGG
AAGAACGGAGGACATAATAGACTACATATCGTGTCGAAGCCACTATGCTA
CGTGTCATGAAAGTGGCTTGACAATAAAGTGGGGGCATTCTTTGTCGGTC
CAAACTCGTCACTTGAGCCTGCATCGACTGCGGCGGGTTTGCCATGCACA
AGCGGAGCTACATTTAGCGTAGCTTGGCCGCGACCATGAATTGCTGACGA
TTACGCTGCAACCGCTGGGTTGATGTGTGTAGTGTCTTCCGACTACTGTG
GAGGCCAGCGTCAGCGTTCTTCTTTGCTTTGGGAGCCTACTGCTGTGTTG
TGCGGTTCCAAGCCTAATCCAATCTACCTTGCATGTTGTTTGGGTTCGTT
GCCGTCGTGTTTTGTTTTTTCTCAACGCGGGTTGATGGCCTGGCTGTACC
TCACACGACATGGCATGGCATGGCATGGCGGGTGTTGGCTGTACCAGCGG
GTGCGTGTTTTGGTCTAAATGCTACTGGTCTAGCGAGCCGTCGGCGGTGG
CAGACAAGGACGAATGGATCCAGTACGACTTGGTGAGCGAGTGCAAAACA
GATACTTCGTACCATACAAGTATAAGCACGGTCGATTAGCACTATGTAGC
CAGGTACGCTGTTAGATACGACACTGCTGTGTTGGCGATTCACGCACCCG
TCTCCATCTGCCCCTCCCACAGCTTCCTAGATTTGAAAACATTTCATGTA
TGTATAGCATTTTCGCCCCTCCCTCCCGGGTGTGTTCTGTGCAAGTGCGC
GTTGGGCGGCTAAATGTGTCGCCTCGTGTGTGGCTCCTGGGGTACAACTC
GCCTCACATCTTGACGGCCCTTTGCAGTTGGATCGATGCCCAGCTCACCA
CACCATCTTGGTCGTATATCGAGTGATCAAAAAGGTGTGCGGTTCCGGCA
AATAACCTCGTGTATTTTACTACTACTGCTGTATACCTAGCAGAGGAACT
CACGCCGATGCGCGAATATCGCTTGCCCCTGACCCCACGCCCGCCCAAAC
ACCCGTGTTTAGCCCCCCCTGACCCTCCTCCCTCCTGCACACCCTGGCCC
CCTGCATGGCGTTCCTAACCCGACCAGCGACCGACGTTCATGCCCCCGCT
TTGCCTCGACGGCGCTTTGCTCTGGTGACGCTTTGCTTGAGTTTGACAAT
AACTTTGCTTTGGCGACCCTTTGCTCTGACGATGCTTTGGCGACAGGTGG
ACGGTCTTGCGGTGGTGTCTTCGTTTGTGCTCACCCCGTACACATCTTTC
TGGCAGCCGGACCAGCCGACGTACAATCCCGTCGAGGCATGCTTCCAGCT
CACGCACCCTCAGATTAACGGGGGCGAAAAACCTTACTATGAAAGCCCTC
GGTTCCGCGTGGATGGCTCCATGAAGGTGAGTGTGGGTGTTGCTGGTCTG
TGTGGAAAGCGCTGCACCGGGTTCTGGTGTAGTGTAGTTACCTACATTTT
GGGAGAAAGCCCGTCTAACCTTGTTGTTTCTATAGACGGACTCGGTGAAA
AAGCGTACCTAGGTATTTCACAGCACCGCAGACACGTGTGTCTCGTAACG
CAACACATTCGGTTATACGTATGTACCTGGCTCATGGATGTTTGCATGGT
AGTATAATAATAGGATTGAGATGCCGTTTTGTCTACGAGCAAGGTGCGAC
CTCTCCTCCCTCTGCGCCACGTGCTTGCACTCGAAATGCCATGCAATGCA
GCGCCAGCAGTTCGACCTGCCGCAGCCGATTCTGAGCTTGGGCGGGCGTG
CCAAGGTGGTCCTATTGGGGATGGCGCAGCGGCAAACCTTGCCGGAAACG
GTGGGGGAGACCGCCAACCACTACCACGTCTGCATCTCCTACGCCTCCCT
GATGGGAACCGTTCTCCTCTCCTGCGGACTAGCCAAGAGGGCGGTTATTT
CGCTCGCGGACCGGAGGAATGACGGTAGTAGCAGTGGAACAGGAGGAGGA
GAGGGAGTTGGCGGGCGGTCTGCGGTAGAAGGGGGTTCGATAGAGGGAGG
GGAGAGTTGGGTGCAGGTGCAGACAGCACGTAAGAAGCAGCAGGATCTGC
GCTTACAGTGGGTGGTGGAGGTGTTCGTGTACCCGGTCGACCCGATGGAT
AGAGTCAGCCGTCAAGCAGGGAAAGGGGAGGGGGAGGCAATCTGCGACTC
GCCAAGACACCTGTTCAAGATTAAGGCCTTCAGCGATACTCCCTGTCTGC
AGTTCGTGAAGCTGTACGCGCCGCTTGTGAAGTCCAAGACAGCAGGAGAT
GTCCGCCTGATGCTGGCTTCTGACTCGGGGGGGGAGGCACTTCCCGTCGG
CGAGGGTGTGGTTTTGGGCAGTTTTGCGGTGGAGGGCAGGCTTGATCTGG
TGGACGCAACTCGCAATCAACCCTGAGTATTCTAGCGTTAAAAGAGCAGT
GTCACATATACTACAAGTATTCGGTAATTGGGGAGGTTAACGTGTTCTGC
TTCAATGGCAAGGGGGCTGTTTGGTATGAATAATTGGGGGGTATTGCGTG
GTGGTATGCAACCAAAAGCCAGACGCGAAAGATGCTGCAGTCTGCCAAAT
TGGTCCCCAATGTCTTCGTCGCACTGGCTGTTGGATGATGGGGCTTCTAA
ATGACTGCTATTCGTCAGAATTATGTTTGCTCGAAATGATAACGCATATT
GTATCATAGTGGTGTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7357:201..4718+

>mRNA_L-elsbetiae_contig7357.16227.1 ID=mRNA_L-elsbetiae_contig7357.16227.1|Name=mRNA_L-elsbetiae_contig7357.16227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2898bp|location=Sequence derived from alignment at L-elsbetiae_contig7357:201..4718+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGCGTTTGGCCACCCCCCGCCAACCCCGAAACTGGCGCCGATGCC
AACGCCGCCGCCGCCTCCGTCGATCTTTTCCTTCTCGGCGCTGCCCACGG
GCCCGCAGTCGACGGTGGTGCTGTACCTCACGGAGGCCGACTTGGCGCAG
CTTCTTGGCACGCACGCGGAGATGATGATGAAGGAGAGCGAGATCGCCTC
GGACGCGTTCTGGCGAGGCCGTTGCTGCAATACTTTCGGGCGGCATGTGG
GTCGCATCCAGATGGAGGCGTTTGGCCACCCCCCGCCAACCCCGAAACTG
GCGCCGATGCCAACGCCGCCGCCGCCTCCGTCGATCTTTTCCTTCTCGGC
GCTGCCCACGGGCCCGCAGTCGACGGTGGTGCTGTACCTCACGGAGGCCG
ACTTGGCGCAGCTTCTTGGCACGCACGCGGAGATGATGATGAAGGAGAGC
GAGATCGCCTCGGACGCGTTCTGGCGAGGCCGTTGCTGCAATACTTTCGG
GCGGCATGTGGGTCGCATCCAGGGCCTTGGCAAGGACGCGTTTCGGGCGT
TTCTGACGGCCAAAGCCAAACGGTGCCTGCCACATTACTACCAGGGTGGG
CGTTTCCACCGGTTTAGGTGTGTCCATCAGCTCCTCACCAAGTGCTTGGG
CGCTTCGAGCCAGGACATGGACGACGAGGGCCTTGGCAAGGACGCGTTTC
GGGCGTTTCTGACGGCCAAAGCCAAACGGTGCCTGCCACATTACTACCAG
GGTGGGCGTTTCCACCGGTTTAGGTGTGTCCATCAGCTCCTCACCAAGTG
CTTGGGCGCTTCGAGCCAGGACATGGACGACGAGAAACCGTCCAACACGC
TGGTCCCGTCGCCGTGTGCGGTGACGCTCGGCGAAGGGGGCACTGATTGG
GAAGGAAAGCTGCGCCAGACCGAATGAAACCGTCCAACACGCTGGTCCCG
TCGCCGTGTGCGGTGACGCTCGGCGAAGGGGGCACTGATTGGGAAGGAAA
GCTGCGCCAGACCGAATGCGGGTGCGTGTTTTGGTCTAAATGCTACTGGT
CTAGCGAGCCGTCGGCGGTGGCAGACAAGGACGAATGGATCCAGTACGAC
TTGCGGGTGCGTGTTTTGGTCTAAATGCTACTGGTCTAGCGAGCCGTCGG
CGGTGGCAGACAAGGACGAATGGATCCAGTACGACTTGGTGGACGGTCTT
GCGGTGGTGTCTTCGTTTGTGCTCACCCCGTACACATCTTTCTGGCAGCC
GGACCAGCCGACGTACAATCCCGTCGAGGCATGCTTCCAGCTCACGCACC
CTCAGATTAACGGGGGCGAAAAACCTTACTATGAAAGCCCTCGGTTCCGC
GTGGATGGCTCCATGAAGGTGGACGGTCTTGCGGTGGTGTCTTCGTTTGT
GCTCACCCCGTACACATCTTTCTGGCAGCCGGACCAGCCGACGTACAATC
CCGTCGAGGCATGCTTCCAGCTCACGCACCCTCAGATTAACGGGGGCGAA
AAACCTTACTATGAAAGCCCTCGGTTCCGCGTGGATGGCTCCATGAAGCG
CCAGCAGTTCGACCTGCCGCAGCCGATTCTGAGCTTGGGCGGGCGTGCCA
AGGTGGTCCTATTGGGGATGGCGCAGCGGCAAACCTTGCCGGAAACGGTG
GGGGAGACCGCCAACCACTACCACGTCTGCATCTCCTACGCCTCCCTGAT
GGGAACCGTTCTCCTCTCCTGCGGACTAGCCAAGAGGGCGGTTATTTCGC
TCGCGGACCGGAGGAATGACGGTAGTAGCAGTGGAACAGGAGGAGGAGAG
GGAGTTGGCGGGCGGTCTGCGGTAGAAGGGGGTTCGATAGAGGGAGGGGA
GAGTTGGGTGCAGGTGCAGACAGCACGTAAGAAGCAGCAGGATCTGCGCT
TACAGTGGGTGGTGGAGGTGTTCGTGTACCCGGTCGACCCGATGGATAGA
GTCAGCCGTCAAGCAGGGAAAGGGGAGGGGGAGGCAATCTGCGACTCGCC
AAGACACCTGTTCAAGATTAAGGCCTTCAGCGATACTCCCTGTCTGCAGT
TCGTGAAGCTGTACGCGCCGCTTGTGAAGTCCAAGACAGCAGGAGATGTC
CGCCTGATGCTGGCTTCTGACTCGGGGGGGGAGGCACTTCCCGTCGGCGA
GGGTGTGGTTTTGGGCAGTTTTGCGGTGGAGGGCAGGCTTGATCTGGTGG
ACGCAACTCGCAATCAACCCTGACGCCAGCAGTTCGACCTGCCGCAGCCG
ATTCTGAGCTTGGGCGGGCGTGCCAAGGTGGTCCTATTGGGGATGGCGCA
GCGGCAAACCTTGCCGGAAACGGTGGGGGAGACCGCCAACCACTACCACG
TCTGCATCTCCTACGCCTCCCTGATGGGAACCGTTCTCCTCTCCTGCGGA
CTAGCCAAGAGGGCGGTTATTTCGCTCGCGGACCGGAGGAATGACGGTAG
TAGCAGTGGAACAGGAGGAGGAGAGGGAGTTGGCGGGCGGTCTGCGGTAG
AAGGGGGTTCGATAGAGGGAGGGGAGAGTTGGGTGCAGGTGCAGACAGCA
CGTAAGAAGCAGCAGGATCTGCGCTTACAGTGGGTGGTGGAGGTGTTCGT
GTACCCGGTCGACCCGATGGATAGAGTCAGCCGTCAAGCAGGGAAAGGGG
AGGGGGAGGCAATCTGCGACTCGCCAAGACACCTGTTCAAGATTAAGGCC
TTCAGCGATACTCCCTGTCTGCAGTTCGTGAAGCTGTACGCGCCGCTTGT
GAAGTCCAAGACAGCAGGAGATGTCCGCCTGATGCTGGCTTCTGACTCGG
GGGGGGAGGCACTTCCCGTCGGCGAGGGTGTGGTTTTGGGCAGTTTTGCG
GTGGAGGGCAGGCTTGATCTGGTGGACGCAACTCGCAATCAACCCTGA
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