mRNA_L-elsbetiae_contig7331.16205.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7331.16205.1
Unique NamemRNA_L-elsbetiae_contig7331.16205.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7331.16205.1 vs. uniprot
Match: D7FYB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB1_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.490e-48
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 1 
Query:    1 AAEDDALRQLDLQIEEESGADGPALEALRVRRRQKAKKIADTNSRLLLARSQHENMWERAMNSYKWVHHLPQISVKNRQYASVQEWIEAEMTDQRRERKRLERAAHLRLKKLKSRSSLQSGHRDTPS 381
            AAE  AL QLD QIEE+SG D PALE LRV+RRQK KKIAD N+RL++A SQHENMWERAM SYKWVHHLPQISVKNRQYASVQEWIEAE+ DQRRERK+LERAA LRLK+L+ RS + S H+D  S
Sbjct:   10 AAEGAALEQLDAQIEEDSGLDEPALEHLRVKRRQKVKKIADANARLVVALSQHENMWERAMKSYKWVHHLPQISVKNRQYASVQEWIEAEIADQRRERKKLERAARLRLKRLQPRSLMHS-HQDQSS 135
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BLAST of mRNA_L-elsbetiae_contig7331.16205.1 vs. uniprot
Match: A0A6H5KRY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY7_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 3.180e-38
Identity = 93/158 (58.86%), Postives = 102/158 (64.56%), Query Frame = 1 
Query:    1 AAEDDALRQLDLQIEEESGADGPALEALRVRRRQKAKKIADTNSRL--------------LLARSQHENMWERAMNSYKWVHHLPQ------------------------ISVKNRQYASVQEWIEAEMTDQRRERKRLERAAHLRLKKLKSRSSLQS 360
            AAE  AL QLD QIEE+SG D PALE LRV+RRQK  KIAD N+RL              L+A SQHENMWERAM SYKWVHHLPQ                        ISVKNRQYASVQ WIEAE+ DQRRERK+LERAA LRLK+L+ RS + S
Sbjct:   10 AAEGAALEQLDAQIEEDSGLDKPALEQLRVKRRQKVNKIADANARLVVRNSHQIHSFQLSLVALSQHENMWERAMKSYKWVHHLPQVRETRTTVAHVMWVNPFPPKCAAWISVKNRQYASVQGWIEAEIADQRRERKKLERAARLRLKRLQPRSLMHS 167
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BLAST of mRNA_L-elsbetiae_contig7331.16205.1 vs. uniprot
Match: A0A836C7P2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7P2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.420e-12
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  112 KIADTNSRLLLARSQHENMWERAMNSYKWVHHLPQISVKNRQYASVQEWIEAEMTDQRRERKRLER 309
            ++A  ++RL    +QHEN+WERA+ SYKWVHHLP ++V  R + S++ W+ AE+  Q R R+R ER
Sbjct: 3197 RVARNSARLAALGAQHENLWERAIRSYKWVHHLPMVAVGERHFPSIEAWVRAELAAQARARRRAER 3262
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7331.16205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYB1_ECTSI1.490e-4876.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRY7_9PHAE3.180e-3858.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7P2_9STRA2.420e-1248.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7331contigL-elsbetiae_contig7331:6501..8996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size393
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7331.16205.1prot_L-elsbetiae_contig7331.16205.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7331 6502..8996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.6988754-CDS-L-elsbetiae_contig7331:6501..65321622816816.6988754-CDS-L-elsbetiae_contig7331:6501..6532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7331 6502..6532 -
1691683835.7137835-CDS-L-elsbetiae_contig7331:6501..65321691683835.7137835-CDS-L-elsbetiae_contig7331:6501..6532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7331 6502..6532 -
1622816816.7119386-CDS-L-elsbetiae_contig7331:7578..77211622816816.7119386-CDS-L-elsbetiae_contig7331:7578..7721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7331 7579..7721 -
1691683835.7252936-CDS-L-elsbetiae_contig7331:7578..77211691683835.7252936-CDS-L-elsbetiae_contig7331:7578..7721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7331 7579..7721 -
1622816816.72385-CDS-L-elsbetiae_contig7331:8358..84331622816816.72385-CDS-L-elsbetiae_contig7331:8358..8433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7331 8359..8433 -
1691683835.733998-CDS-L-elsbetiae_contig7331:8358..84331691683835.733998-CDS-L-elsbetiae_contig7331:8358..8433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7331 8359..8433 -
1622816816.736154-CDS-L-elsbetiae_contig7331:8855..89961622816816.736154-CDS-L-elsbetiae_contig7331:8855..8996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7331 8856..8996 -
1691683835.7464411-CDS-L-elsbetiae_contig7331:8855..89961691683835.7464411-CDS-L-elsbetiae_contig7331:8855..8996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7331 8856..8996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7331.16205.1

>prot_L-elsbetiae_contig7331.16205.1 ID=prot_L-elsbetiae_contig7331.16205.1|Name=mRNA_L-elsbetiae_contig7331.16205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
AAEDDALRQLDLQIEEESGADGPALEALRVRRRQKAKKIADTNSRLLLAR
SQHENMWERAMNSYKWVHHLPQISVKNRQYASVQEWIEAEMTDQRRERKR
LERAAHLRLKKLKSRSSLQSGHRDTPSASS
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mRNA from alignment at L-elsbetiae_contig7331:6501..8996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7331.16205.1 ID=mRNA_L-elsbetiae_contig7331.16205.1|Name=mRNA_L-elsbetiae_contig7331.16205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2496bp|location=Sequence derived from alignment at L-elsbetiae_contig7331:6501..8996- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCGGAAGACGACGCTCTGCGGCAGCTCGACCTGCAGATAGAGGAGGA
GTCCGGAGCTGACGGGCCCGCGCTTGAGGCGCTGCGCGTGAGGCGCAGAC
AGAAAGCGAAGAAGATCGCCGACACGAACAGCCGGCTCTTGGTGCGTGCT
GAGCCAGTCAGGCTTTGCTTACTCGTGGCCAGGCCTTTTTTGTTTTTGTT
CCTCCCATCATTGGCATATTTGTCGTCTGCCCCACTGGCCCCCTTCCCCC
ACTACGACTATAGCTAGACGACCCAACCGGGGTCACACAGGAGGGACCTC
CTGCGGTGCCCGCCTTTGATGTTTTTATCAATTGTGTCGACGTAGAGCTT
TGGCCCGGGTAAAGAATGGTGCGAAGTGGATCTCCGGAGGAGCAGACATA
ATAAATAGTTCATATTGTAGTATCTACATAGATCGCCGGGGTTCTTGTAT
GTGGCATTAGTCCAAGATAGTCTGCAGCAAACGAAAAATCGAAAAAACGG
AGACCGCGTATTCATTTAAGTTTTTCGGAACCGCCGTGATGACATGTCCA
CCCGCGCATGCAGTTGGCGCGCTCGCAGCACGAGAACATGTGGGAGCGGG
CCATGAACAGCTACAAGTGGGTGCACCACCTGCCCCAGGTGAGCGGGTGG
CTGTTCGGTCGCCCAAAGGAGAAACCTGTTTTTTCGTTCGAACGTCCTCT
TTTTAGTGTCCTTCAATTACTGCTTACATGTGCAGTACGTACGTAGAGGA
ACAAGCACAGCAAAGAGAAACCGCGATAACGCGCGAGTGAGGTGATTTCC
ATATGTAGCATGGACATCCACAACCAGACACTTCCCTCCATAGCAACGAC
AAAGGTGGAGGGGAGTGTCTGAGCAGCCCCCCCCGGCAGCCGCCACAGGC
TTTCGCTCGCAGCACGAGAATAGAGTCGAACGGCACACCCTACACAAAAA
TGCGCGGTAAAACCACCGCAACTATCTTGGATGGGAAAACAGGGGGTCAG
TATGCCTACAACAGTCCCTCTGGAACGATTTCTTCGCAGACTGGACGTAG
ACTGGCGACCATTGTACACATTACTTAAAAAACACGAGGAGGCGTTTGAG
CCCCTTCTCACCAGGCAGCCGAAATCGCGCTTGGCTCGCTGGTTTTCTGG
ATTTTTATGTACAGTAATACAGTAGTAGATATACTTTTTGCTCCGTATTT
CGGCTGTCGCTTAGTCTTGAGTATTCGACTTATTTGTTTGATGGTTGGTG
ATGGCTCGATATTGCACCGTGGCAGATCTCAGTGAAAAATAGGCAGTATG
CGAGCGTCCAGGAGTGGATCGAAGCGGAGATGACCGACCAGCGGAGGGAA
AGGAAGAGGCTCGAGCGGGCGGCGCACCTGCGTCTGAAGAAGCTCAAGTC
CCGCAGCTCACTGCAGAGGTAAAACTACCACCACCTCTGCTGTAGATCAT
AATTTGGCTTGTTACCATTGTGGTGATGGTGGTGGTGGTACTTCAACTGT
ACCTTAATTTTAATGGCTTCCTGCGGGACGCAGCTGCCAGTGACACTCCC
CGGGCATGTATGTATGTGCATTGGAGAAGAGCTACGAATGAATAGTCCAG
GCCTACTTTCTCGGATCGTTCCTCCTCCTCTTGGCCTTCGCTCTGAAGAC
AAGGTCCCTTGTGCTGCCCCAAAAAGGGCTACATACCGTAGGTGACACAA
GATACCACACCCTCTGGACAGATTTTCAAAGCTCGATTCCTCCCCAGCAA
GAAGAGCGCCACTGCCGAAAGGGGTGGCGTTGGAAAGACCCAGTCCAGGG
CTGTCCGAAAATGTGTCGTTTGGTGCTGGCATCCTCTTCGTTACGGGGTA
ATGGAGCTCTAAAAGTCGGTCCAGGGGGTGTGGTAACTTGTGTCACCTAC
GGTAAGGCCCGTGCCTTAAAAACCTTCACAGGGTGTTACATCACCTAACA
ATCGTTTCGCGCGCTAACAGCGGTTGTTACATACGTCCAAGGCACACAGG
GCGCGACCACCGACGTTACGCCCGGGGCCACGGCAGGTTTCACTCCGCCC
ATCAGCGCCGAAGCCTGAGTCTCCACCCTCCATCTGTGTAGAAAGATACT
GGTACTACTACTGTACAGCACTTTACACACACGATCAACGTTCAGAGCTT
CCGCGGCTTCCACCACATGTAGACATGTGTCTCTCTCTTTGCTCGAGATC
GACATAGAACCATGCAATACATACCTGGCTCGCCAAGCAAGCCTGCTTCA
GCTTTCCGCAGCCAGCCTGTATCCTCTCTATACCTATCCAATCAATAAAT
ACCAACTATTTAGAGCCTGTGTGAAGTCCCGCTGCCACCGCAACTGCTCT
TCAGACTACTTATGTACATGTACACGGTGGTGAATAATGGATGGATGCGC
CCCCCCCGTCCCCGTTCCATCAACGTCGCCGTCTCACGTTAAAACCACCA
CGCACGGCGGCCAGCGGCCACCGAGACACCCCGTCTGCCTCATCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7331:6501..8996-

>mRNA_L-elsbetiae_contig7331.16205.1 ID=mRNA_L-elsbetiae_contig7331.16205.1|Name=mRNA_L-elsbetiae_contig7331.16205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig7331:6501..8996- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCGGAAGACGACGCTCTGCGGCAGCTCGACCTGCAGATAGAGGAGGA
GTCCGGAGCTGACGGGCCCGCGCTTGAGGCGCTGCGCGTGAGGCGCAGAC
AGAAAGCGAAGAAGATCGCCGACACGAACAGCCGGCTCTTGGCAGCGGAA
GACGACGCTCTGCGGCAGCTCGACCTGCAGATAGAGGAGGAGTCCGGAGC
TGACGGGCCCGCGCTTGAGGCGCTGCGCGTGAGGCGCAGACAGAAAGCGA
AGAAGATCGCCGACACGAACAGCCGGCTCTTGTTGGCGCGCTCGCAGCAC
GAGAACATGTGGGAGCGGGCCATGAACAGCTACAAGTGGGTGCACCACCT
GCCCCAGTTGGCGCGCTCGCAGCACGAGAACATGTGGGAGCGGGCCATGA
ACAGCTACAAGTGGGTGCACCACCTGCCCCAGATCTCAGTGAAAAATAGG
CAGTATGCGAGCGTCCAGGAGTGGATCGAAGCGGAGATGACCGACCAGCG
GAGGGAAAGGAAGAGGCTCGAGCGGGCGGCGCACCTGCGTCTGAAGAAGC
TCAAGTCCCGCAGCTCACTGCAGAGATCTCAGTGAAAAATAGGCAGTATG
CGAGCGTCCAGGAGTGGATCGAAGCGGAGATGACCGACCAGCGGAGGGAA
AGGAAGAGGCTCGAGCGGGCGGCGCACCTGCGTCTGAAGAAGCTCAAGTC
CCGCAGCTCACTGCAGAGCGGCCACCGAGACACCCCGTCTGCCTCATCAC
GGCCACCGAGACACCCCGTCTGCCTCATCA
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