mRNA_L-elsbetiae_contig7329.16201.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7329.16201.1
Unique NamemRNA_L-elsbetiae_contig7329.16201.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A6H5KNW1_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW1_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.800e-34
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 3
Query:    3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233
            GYCPQFDALFETLT REHLALYA+IK       +AAV+QKIEEMGL+QYADRPAGGYSGGNKRKLSVA+AMIGDPQ+
Sbjct:  162 GYCPQFDALFETLTGREHLALYASIKGIPADKRSAAVDQKIEEMGLKQYADRPAGGYSGGNKRKLSVAMAMIGDPQI 238          
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 3.120e-33
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 3
Query:    3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233
            GYCPQFDALFETLT REHLALYA+IK       +AAV+QKIEEMGL+QYADRPAGGYSGGNKRKLSVA+AMIGDPQ+
Sbjct: 1624 GYCPQFDALFETLTGREHLALYASIKGIPADKRSAAVDQKIEEMGLKQYADRPAGGYSGGNKRKLSVAMAMIGDPQI 1700          
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 5.070e-32
Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 3
Query:    3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233
            GYCPQFDALFETLT REHLALYAAIK       +AAV QKIEEMGL +YA+RPAGGYSGGNKRKLSVA+AMIGDPQV
Sbjct:  727 GYCPQFDALFETLTGREHLALYAAIKGIPADKRSAAVNQKIEEMGLTRYAERPAGGYSGGNKRKLSVAMAMIGDPQV 803          
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 6.980e-32
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 3
Query:    3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233
            GYCPQFDALFETLT REHLALYAAIK       +AAV QKIEEMGL +YA+RPAGGYSGGNKRKLSVA+AMIGDPQ+
Sbjct: 1644 GYCPQFDALFETLTGREHLALYAAIKGIPADKRSAAVNQKIEEMGLTRYAERPAGGYSGGNKRKLSVAMAMIGDPQI 1720          
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.120e-25
Identity = 54/77 (70.13%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233
            GYCPQFDALFETLT REHL LYAAIK         A    I ++GL QYAD+ AG YSGGNKRKLSVAVAMIGDPQ+
Sbjct: 1646 GYCPQFDALFETLTGREHLRLYAAIKGIPAAEVEEAASTMITDLGLGQYADKLAGSYSGGNKRKLSVAVAMIGDPQI 1722          
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A835YSC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.390e-25
Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 3
Query:    3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233
            GYCPQFDALFE++TAREHL +YA IK        AA E K+ EM L QYAD+ AGGYSGGNKRKLSVAVAM+G P++
Sbjct: 2001 GYCPQFDALFESMTAREHLEMYARIKGLRESDVKAAAEAKMTEMDLLQYADKLAGGYSGGNKRKLSVAVAMLGGPEI 2077          
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A6H5K0F9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.180e-24
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = 3
Query:    3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233
            GYCPQFDALFETLT REHL LYAAIKA +           I ++GL   AD+ AG YSGGNKRKLSVAVAMIG PQ+
Sbjct:   27 GYCPQFDALFETLTGREHLRLYAAIKAAS---------TMITDLGLGHNADKLAGSYSGGNKRKLSVAVAMIGHPQI 94          
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A0V0QXE0_PSEPJ (p-loop containing nucleoside triphosphate hydrolase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QXE0_PSEPJ)

HSP 1 Score: 102 bits (253), Expect = 1.650e-23
Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 3
Query:    3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233
            GYCPQFDAL E LT REHL LYAAIK     L    + QKIEEM L+++   PAG YSGGNKRKLSVAVAMIG+P V
Sbjct: 1404 GYCPQFDALLENLTTREHLELYAAIKGIPSHLREKLITQKIEEMNLKKFEHIPAGTYSGGNKRKLSVAVAMIGNPPV 1480          
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A6H5JVX0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.880e-23
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233
            GYCPQFDALFETLT REHL LYAAIKA +           I ++GL  YAD+ AG YSGGNKRKLSVAVAMIG+PQ+
Sbjct:  227 GYCPQFDALFETLTGREHLRLYAAIKAAS---------TMITDLGLGHYADKLAGSYSGGNKRKLSVAVAMIGNPQI 294          
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: Q24IL8_TETTS (ABC transporter family protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q24IL8_TETTS)

HSP 1 Score: 100 bits (250), Expect = 4.210e-23
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 3
Query:    3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233
            GYCPQFDAL + LT+REHL LYAAIK     L    VEQK++EM LRQ+ +  AG YSGGNKRKLSVA+AM+G+P +
Sbjct: 1365 GYCPQFDALLDNLTSREHLELYAAIKGIPSDLIPQLVEQKLDEMNLRQFENICAGTYSGGNKRKLSVAIAMLGNPPI 1441          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNW1_9PHAE1.800e-3481.82ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FZE8_ECTSI3.120e-3381.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M8_9PHAE5.070e-3281.82ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FZE9_ECTSI6.980e-3280.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZA6_ECTSI2.120e-2570.13ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ect... [more]
A0A835YSC0_9STRA7.390e-2567.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K0F9_9PHAE2.180e-2466.23ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A0V0QXE0_PSEPJ1.650e-2367.53p-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5JVX0_9PHAE3.880e-2367.53ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
Q24IL8_TETTS4.210e-2363.64ABC transporter family protein n=1 Tax=Tetrahymena... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7329contigL-elsbetiae_contig7329:7131..7533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size234
Cds size141
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7329.16201.1prot_L-elsbetiae_contig7329.16201.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7329 7223..7533 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.319356-UTR-L-elsbetiae_contig7329:7130..72221622816816.319356-UTR-L-elsbetiae_contig7329:7130..7222Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7329 7131..7222 -
1691683835.3905215-UTR-L-elsbetiae_contig7329:7130..72221691683835.3905215-UTR-L-elsbetiae_contig7329:7130..7222Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7329 7131..7222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.330337-CDS-L-elsbetiae_contig7329:7222..72611622816816.330337-CDS-L-elsbetiae_contig7329:7222..7261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7329 7223..7261 -
1691683835.402736-CDS-L-elsbetiae_contig7329:7222..72611691683835.402736-CDS-L-elsbetiae_contig7329:7222..7261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7329 7223..7261 -
1622816816.340633-CDS-L-elsbetiae_contig7329:7431..75331622816816.340633-CDS-L-elsbetiae_contig7329:7431..7533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7329 7432..7533 -
1691683835.416124-CDS-L-elsbetiae_contig7329:7431..75331691683835.416124-CDS-L-elsbetiae_contig7329:7431..7533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7329 7432..7533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7329.16201.1

>prot_L-elsbetiae_contig7329.16201.1 ID=prot_L-elsbetiae_contig7329.16201.1|Name=mRNA_L-elsbetiae_contig7329.16201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=47bp
WGTAPNSTHCSRRSRPESILRSTRRSRHVPANYAPRPSSRRSKRWA*
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mRNA from alignment at L-elsbetiae_contig7329:7131..7533-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7329.16201.1 ID=mRNA_L-elsbetiae_contig7329.16201.1|Name=mRNA_L-elsbetiae_contig7329.16201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=403bp|location=Sequence derived from alignment at L-elsbetiae_contig7329:7131..7533- (Laminarionema elsbetiae ELsaHSoW15)
TGGGGTACTGCCCCCAATTCGACGCACTGTTCGAGACGCTCACGGCCAGA GAGCATCTTGCGCTCTACGCGGCGATCAAGGCACGTGCCGGCAAATTATG CAGTGCGACGTCACTGCGATACTCTGTCCGCAATCAGCCCCCTAGGCCCT GTTACTGCTGTCTGCGGTTGCCACGCCTCCCTTCCCCCACCAACGGTGGG CCGCTTTTTAGTATAACCGGACACCCACACTAACCCGTTTGTATGTTCAG GGCATTCCGGCGGACAAGCAAGCCGCGGCCGTCGAGCAGAAGATCGAAGA GATGGGCCTGAGGCAGTACGCTGACAGGCCCGCCGGGGGATACAGCGGGG GCAACAAGCGCAAGCTGTCGGTCGCCGTGGCCATGATCGGAGACCCACAA GTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7329:7131..7533-

>mRNA_L-elsbetiae_contig7329.16201.1 ID=mRNA_L-elsbetiae_contig7329.16201.1|Name=mRNA_L-elsbetiae_contig7329.16201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig7329:7131..7533- (Laminarionema elsbetiae ELsaHSoW15)
TGGGGTACTGCCCCCAATTCGACGCACTGTTCGAGACGCTCACGGCCAGA
GAGCATCTTGCGCTCTACGCGGCGATCAAGGCACGTGCCGGCAAATTATG
CATGGGGTACTGCCCCCAATTCGACGCACTGTTCGAGACGCTCACGGCCA
GAGAGCATCTTGCGCTCTACGCGGCGATCAAGGCACGTGCCGGCAAATTA
TGCACCGCGGCCGTCGAGCAGAAGATCGAAGAGATGGGCCTGACCGCGGC
CGTCGAGCAGAAGATCGAAGAGATGGGCCTGA
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