mRNA_L-elsbetiae_contig7316.16187.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7316.16187.1
Unique NamemRNA_L-elsbetiae_contig7316.16187.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7316.16187.1 vs. uniprot
Match: D8LIF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF9_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 4.740e-71
Identity = 187/413 (45.28%), Postives = 215/413 (52.06%), Query Frame = 1 
Query:    1 GKYEAVYNATRAGYYSLEVKDASEGGHAIGSPFQVLVEPNRAFAPATLVWWDRQVAGSNEVHLQAVDSWSNNITQGGEMFVARWTPREAVAAAATNVFDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSGGGDTGAYVTDVGGGRYEITTASAAGSYWLEIGVVEPGGLWGTYYEDGGVETEAVSWTPEASWRTKSRVDYDWGVFSPEVGVDRFGTSPYLVPNGNASTVEDSSSSPSMSSPELPSWNASSPLFPADYFTARFTGFVRAEIGGEHRFHVTADGGSRVALSVSGQELFNDLLTPPAQSSSAXXDTEVTGXXXXXXXXXXXXXDGSTGVVSEEPSSTGAPGGSGGAVAEGRTGSLVLPAGELVPIQLRYA 1239
            GK+EAVYNAT+ G YSLEV DAS+G HA+GSPFQV+VEPN+AFAPATLVWW+RQV GSN +HLQAVD W NNITQGGE FVARW PRE         ++                               XXXXXXXXXXXXXXXXXXXXX             S GGDTGAYVTDVGGGRYE+TTA+ AGSYWLEIGVVEPGGLWGTYYE GGVETE                                                                                   V+A++ GE+RF V  D  SRVALSVSG ELF+DLL            +E TG              GS   ++ + +S G        +++GRTGSL+L AGE+VP+QLRYA
Sbjct: 1217 GKHEAVYNATKTGNYSLEVVDASDGEHAVGSPFQVVVEPNQAFAPATLVWWERQVCGSNVIHLQAVDFWHNNITQGGEAFVARWKPRENQVETVATAYEIVAADDDRADAASETTEEGDFWTSEDGWDDTXXXXXXXXXXXXXXXXXXXXXDNSGSQYA-----SSGGDTGAYVTDVGGGRYEVTTAAVAGSYWLEIGVVEPGGLWGTYYEHGGVETE-----------------------------------------------------------------------------------VKADLEGEYRFRVATDRSSRVALSVSGVELFDDLLPT----------SETTG--------------GSAADMTSDEASAGTA-----MLSKGRTGSLLLAAGEMVPLQLRYA 1512
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7316.16187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIF9_ECTSI4.740e-7145.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7316contigL-elsbetiae_contig7316:1636..4172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.1
Seed ortholog evalue2.3e-64
Seed eggNOG ortholog2880.D8LIF9
KEGG koko:K04437,ko:K06572
KEGG Pathwayko04010,ko04360,ko04510,ko05132,ko05205,map04010,map04360,map04510,map05132,map05205
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of membrane repolarization during atrial cardiac muscle cell action potential
EggNOG OGsCOG5069@1,KOG0518@2759
Ec32 ortholog descriptionPA14
Ec32 orthologEc-18_003830.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090,ko04147,ko04812
Exons4
Model size1240
Cds size1239
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7316.16187.1prot_L-elsbetiae_contig7316.16187.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7316 1636..4172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.9951878-CDS-L-elsbetiae_contig7316:1635..17971622816814.9951878-CDS-L-elsbetiae_contig7316:1635..1797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 1636..1797 +
1691683834.412019-CDS-L-elsbetiae_contig7316:1635..17971691683834.412019-CDS-L-elsbetiae_contig7316:1635..1797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 1636..1797 +
1622816815.008204-CDS-L-elsbetiae_contig7316:2173..26661622816815.008204-CDS-L-elsbetiae_contig7316:2173..2666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 2174..2666 +
1691683834.4258485-CDS-L-elsbetiae_contig7316:2173..26661691683834.4258485-CDS-L-elsbetiae_contig7316:2173..2666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 2174..2666 +
1622816815.0229404-CDS-L-elsbetiae_contig7316:3221..34701622816815.0229404-CDS-L-elsbetiae_contig7316:3221..3470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 3222..3470 +
1691683834.4344165-CDS-L-elsbetiae_contig7316:3221..34701691683834.4344165-CDS-L-elsbetiae_contig7316:3221..3470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 3222..3470 +
1622816815.0346398-CDS-L-elsbetiae_contig7316:3837..41721622816815.0346398-CDS-L-elsbetiae_contig7316:3837..4172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 3838..4172 +
1691683834.4429538-CDS-L-elsbetiae_contig7316:3837..41721691683834.4429538-CDS-L-elsbetiae_contig7316:3837..4172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 3838..4172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7316.16187.1

>prot_L-elsbetiae_contig7316.16187.1 ID=prot_L-elsbetiae_contig7316.16187.1|Name=mRNA_L-elsbetiae_contig7316.16187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=413bp
GKYEAVYNATRAGYYSLEVKDASEGGHAIGSPFQVLVEPNRAFAPATLVW
WDRQVAGSNEVHLQAVDSWSNNITQGGEMFVARWTPREAVAAAATNVFDS
AAGGDGDGAAAVEEGDYFWENNDVDTASIAAGFFFTFFSGGDNTTNTTNT
VDDSSGNSSSTLSPSGGGDTGAYVTDVGGGRYEITTASAAGSYWLEIGVV
EPGGLWGTYYEDGGVETEAVSWTPEASWRTKSRVDYDWGVFSPEVGVDRF
GTSPYLVPNGNASTVEDSSSSPSMSSPELPSWNASSPLFPADYFTARFTG
FVRAEIGGEHRFHVTADGGSRVALSVSGQELFNDLLTPPAQSSSAGGDTE
VTGGLAAATTSGEAGGDGSTGVVSEEPSSTGAPGGSGGAVAEGRTGSLVL
PAGELVPIQLRYA
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mRNA from alignment at L-elsbetiae_contig7316:1636..4172+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7316.16187.1 ID=mRNA_L-elsbetiae_contig7316.16187.1|Name=mRNA_L-elsbetiae_contig7316.16187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2537bp|location=Sequence derived from alignment at L-elsbetiae_contig7316:1636..4172+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAAGTATGAGGCTGTGTACAACGCCACGCGAGCAGGCTACTACTCCCT
CGAGGTGAAAGACGCCTCTGAAGGGGGACACGCAATTGGCTCTCCATTCC
AGGTCCTGGTGGAGCCCAACAGGGCGTTCGCGCCGGCAACGTTGGTTTGG
TGGGACAGACAGGTGGGGGTACCGTGCTTGGGTGGATAGATGGGTGGGTG
GGTGTTCGTGCGGGCGAGCTCGTGAGTTATGCCGCAGAAGAGGGGGGGAA
GAAAAGTATGGGTGGTCCGTTGACAGCTGTATGGTTGTGCAATGGGGTGC
AAAGGGCGAAGAGGATGCTCCCGTTATCCCAGGAGCGACAGAAACGAACC
ATGTTGTACATACTTCGAAGTGCATACATAGGACTTTCAACCTTCCCCTC
CCCGTATGCCATCCTCGGTCGCGAGCAGCGCCCTGTTTACGCCTTCTCTT
GTAGGCAGCGCTGCCTGTGCCCTTCATCACGTGATCTGGCCCAACTTCGA
ACCTTCTCACGGTGTGTGGGACTTCAACCACCTCGCAGGTGGCCGGGTCG
AACGAAGTCCATCTTCAGGCCGTGGATAGCTGGAGCAACAATATCACGCA
GGGGGGAGAGATGTTCGTGGCGCGTTGGACGCCCCGGGAAGCCGTCGCCG
CGGCTGCCACCAACGTCTTCGACAGCGCCGCCGGCGGGGACGGCGATGGC
GCCGCCGCGGTAGAAGAGGGGGACTACTTCTGGGAGAACAACGACGTAGA
TACGGCTTCCATTGCCGCCGGCTTTTTCTTCACGTTTTTCTCTGGTGGCG
ATAACACAACTAACACCACCAACACTGTAGACGACAGCAGCGGCAACTCT
AGTAGCACCCTCTCGCCAAGCGGCGGTGGTGACACCGGCGCATACGTGAC
CGACGTCGGCGGCGGGCGGTACGAGATCACCACGGCTTCAGCGGCGGGCT
CGTATTGGCTGGAAATCGGGGTTGTAGAACCCGGCGGGTTGTGGGGCACG
TACTACGAGGACGGTGGCGTCGAGACGGAAGGTCGGTGGGTGTAATACAA
AACACACCGAGGGCACGCATCTGACTCCCGAGGATATCATGCAGTAGTGC
CGTGCTGTTTCTCGGTGTTGAGGTCAGCAGGCCCGCCCGACACGGTAGTT
GTTATGGTACTGTATTTCTTCCGATGCCGGGTTCTTTTTATTTCGCAACG
AAGCCAGCAAAGTGAGGAGAGAAAAGGTATCCTGCCGTTACGCAGCGATT
GTGATAAGCCGAAGGCGACCAAACAATCGAAACCTGCATACTTGGTACAT
ACGTGGGACCAGGTACGCGTGTATAGCTCAAAACGAGCGACCCACGTAAT
CGACTTGATCCCATCGAACCCACCCTTGTGTTGTTCTTTCTTCGCCTCCA
AGAGTAGACCTCACCGCCGCCCTCGTCGTTCCGTCTCTCGCCGCCTATTT
GTCTCTACATACTCCCTCCGCCTTTCGCTAGTCTTTCTCGTCACGCCATG
CTTCCAATCTCCCCTCCCTCCTCTCTCTCCCTTCCGCTTTCTTGTCCACG
TAACCCTGGGCAAACCAAAACCAACCAAACAAGCAGCGGTGTCCTGGACC
CCAGAAGCAAGCTGGAGGACAAAGAGCAGGGTGGACTACGACTGGGGGGT
CTTCTCTCCCGAGGTCGGGGTCGATCGCTTCGGGACGTCGCCGTACCTCG
TGCCGAACGGCAACGCCAGCACCGTCGAAGACTCGTCGTCCTCGCCATCG
ATGTCGTCTCCTGAGCTGCCCTCGTGGAACGCTTCGTCTCCGCTCTTCCC
CGCGGACTACTTCACCGCCCGCTTCACCGGGTTCGGTAAGATGTGGACGT
GTTCGCGACAAAATAAATGCAAGCTTTTTTTTCTTTTTTTCGCTGATGAC
ACTCTTTTCCTCTCGAGCATCCTGCTGTTATGGCGGCAAACGACTACGAA
GGCACATGGCGGTGTATGGCTACGTCTCCTCTCTTTGGTCACAACGTGTC
CTTCGACCGTTTATAACTTAGTGCGAAAAATCATGCTGTGAGGTTGGTCT
GAAGCAGCGTGTCTGTCTGCTATGTACGTTTGGTGCGGCCTGCTTTCCCC
TTCGAAAACCACCACCACCAACAATAACAACAACAACAACAACAACAACA
ACCATATCACCACCACCGCCGTCACCACTGCCACCACCGCCACCGCCAAC
AGTGCGAGCGGAGATCGGCGGCGAGCACCGCTTCCACGTCACCGCCGACG
GCGGATCAAGAGTAGCCCTGTCAGTGTCCGGGCAAGAACTCTTCAACGAC
CTCCTGACCCCGCCCGCACAATCTTCATCGGCGGGAGGAGATACGGAGGT
GACGGGAGGTCTCGCTGCCGCCACGACAAGTGGCGAGGCTGGAGGCGACG
GCTCCACCGGCGTCGTATCCGAGGAACCGTCGTCTACGGGTGCTCCCGGC
GGGAGCGGGGGGGCGGTGGCAGAAGGAAGGACGGGCAGCTTGGTGCTGCC
GGCGGGGGAGCTCGTTCCGATTCAGCTTCGATACGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7316:1636..4172+

>mRNA_L-elsbetiae_contig7316.16187.1 ID=mRNA_L-elsbetiae_contig7316.16187.1|Name=mRNA_L-elsbetiae_contig7316.16187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2478bp|location=Sequence derived from alignment at L-elsbetiae_contig7316:1636..4172+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAAGTATGAGGCTGTGTACAACGCCACGCGAGCAGGCTACTACTCCCT
CGAGGTGAAAGACGCCTCTGAAGGGGGACACGCAATTGGCTCTCCATTCC
AGGTCCTGGTGGAGCCCAACAGGGCGTTCGCGCCGGCAACGTTGGTTTGG
TGGGACAGACAGGGCAAGTATGAGGCTGTGTACAACGCCACGCGAGCAGG
CTACTACTCCCTCGAGGTGAAAGACGCCTCTGAAGGGGGACACGCAATTG
GCTCTCCATTCCAGGTCCTGGTGGAGCCCAACAGGGCGTTCGCGCCGGCA
ACGTTGGTTTGGTGGGACAGACAGGTGGCCGGGTCGAACGAAGTCCATCT
TCAGGCCGTGGATAGCTGGAGCAACAATATCACGCAGGGGGGAGAGATGT
TCGTGGCGCGTTGGACGCCCCGGGAAGCCGTCGCCGCGGCTGCCACCAAC
GTCTTCGACAGCGCCGCCGGCGGGGACGGCGATGGCGCCGCCGCGGTAGA
AGAGGGGGACTACTTCTGGGAGAACAACGACGTAGATACGGCTTCCATTG
CCGCCGGCTTTTTCTTCACGTTTTTCTCTGGTGGCGATAACACAACTAAC
ACCACCAACACTGTAGACGACAGCAGCGGCAACTCTAGTAGCACCCTCTC
GCCAAGCGGCGGTGGTGACACCGGCGCATACGTGACCGACGTCGGCGGCG
GGCGGTACGAGATCACCACGGCTTCAGCGGCGGGCTCGTATTGGCTGGAA
ATCGGGGTTGTAGAACCCGGCGGGTTGTGGGGCACGTACTACGAGGACGG
TGGCGTCGAGACGGAAGGTGGCCGGGTCGAACGAAGTCCATCTTCAGGCC
GTGGATAGCTGGAGCAACAATATCACGCAGGGGGGAGAGATGTTCGTGGC
GCGTTGGACGCCCCGGGAAGCCGTCGCCGCGGCTGCCACCAACGTCTTCG
ACAGCGCCGCCGGCGGGGACGGCGATGGCGCCGCCGCGGTAGAAGAGGGG
GACTACTTCTGGGAGAACAACGACGTAGATACGGCTTCCATTGCCGCCGG
CTTTTTCTTCACGTTTTTCTCTGGTGGCGATAACACAACTAACACCACCA
ACACTGTAGACGACAGCAGCGGCAACTCTAGTAGCACCCTCTCGCCAAGC
GGCGGTGGTGACACCGGCGCATACGTGACCGACGTCGGCGGCGGGCGGTA
CGAGATCACCACGGCTTCAGCGGCGGGCTCGTATTGGCTGGAAATCGGGG
TTGTAGAACCCGGCGGGTTGTGGGGCACGTACTACGAGGACGGTGGCGTC
GAGACGGAAGCGGTGTCCTGGACCCCAGAAGCAAGCTGGAGGACAAAGAG
CAGGGTGGACTACGACTGGGGGGTCTTCTCTCCCGAGGTCGGGGTCGATC
GCTTCGGGACGTCGCCGTACCTCGTGCCGAACGGCAACGCCAGCACCGTC
GAAGACTCGTCGTCCTCGCCATCGATGTCGTCTCCTGAGCTGCCCTCGTG
GAACGCTTCGTCTCCGCTCTTCCCCGCGGACTACTTCACCGCCCGCTTCA
CCGGGTTCGCGGTGTCCTGGACCCCAGAAGCAAGCTGGAGGACAAAGAGC
AGGGTGGACTACGACTGGGGGGTCTTCTCTCCCGAGGTCGGGGTCGATCG
CTTCGGGACGTCGCCGTACCTCGTGCCGAACGGCAACGCCAGCACCGTCG
AAGACTCGTCGTCCTCGCCATCGATGTCGTCTCCTGAGCTGCCCTCGTGG
AACGCTTCGTCTCCGCTCTTCCCCGCGGACTACTTCACCGCCCGCTTCAC
CGGGTTCGTGCGAGCGGAGATCGGCGGCGAGCACCGCTTCCACGTCACCG
CCGACGGCGGATCAAGAGTAGCCCTGTCAGTGTCCGGGCAAGAACTCTTC
AACGACCTCCTGACCCCGCCCGCACAATCTTCATCGGCGGGAGGAGATAC
GGAGGTGACGGGAGGTCTCGCTGCCGCCACGACAAGTGGCGAGGCTGGAG
GCGACGGCTCCACCGGCGTCGTATCCGAGGAACCGTCGTCTACGGGTGCT
CCCGGCGGGAGCGGGGGGGCGGTGGCAGAAGGAAGGACGGGCAGCTTGGT
GCTGCCGGCGGGGGAGCTCGTTCCGATTCAGCTTCGATACGCGTGCGAGC
GGAGATCGGCGGCGAGCACCGCTTCCACGTCACCGCCGACGGCGGATCAA
GAGTAGCCCTGTCAGTGTCCGGGCAAGAACTCTTCAACGACCTCCTGACC
CCGCCCGCACAATCTTCATCGGCGGGAGGAGATACGGAGGTGACGGGAGG
TCTCGCTGCCGCCACGACAAGTGGCGAGGCTGGAGGCGACGGCTCCACCG
GCGTCGTATCCGAGGAACCGTCGTCTACGGGTGCTCCCGGCGGGAGCGGG
GGGGCGGTGGCAGAAGGAAGGACGGGCAGCTTGGTGCTGCCGGCGGGGGA
GCTCGTTCCGATTCAGCTTCGATACGCG
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