mRNA_L-elsbetiae_contig731.16181.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig731.16181.1
Unique NamemRNA_L-elsbetiae_contig731.16181.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig731.16181.1 vs. uniprot
Match: A0A6H5KYP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.890e-18
Identity = 69/118 (58.47%), Postives = 83/118 (70.34%), Query Frame = 1 
Query:   79 RELKERAAAAAREAGLRRDEVSRLKGEVERSRAACADKDLELASKSKELAQQSGIIDYINKLSSNAAAEAAAAEKSSKIKGHKSAAPAAPTAAVVSARDAPGHGVGGRATQVPDSEGH 432
            REL E+AA+A REAG+RR+E++  K E+ER RAACA+KD+ELA+KSKEL QQ+GIIDYINKLSSNAAAEAAAA       G+K        A  V+   + G G G   TQVP S GH
Sbjct:  203 RELVEKAASADREAGIRREELAGFKAELERLRAACAEKDVELANKSKELGQQAGIIDYINKLSSNAAAEAAAAG------GNKPVIANLVPAQAVTLHGSSG-GSGDSVTQVPASAGH 313
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BLAST of mRNA_L-elsbetiae_contig731.16181.1 vs. uniprot
Match: D8LJ54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ54_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.340e-10
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:  133 DEVSRLKGEVERSRAACADKDLELASKSKELAQQSGIIDYINKLSSNAAAEAAAA 297
            +EV+  K E+ER RAACA+KD+ELA+KSKEL QQ+GIIDYINKLSSNAAAEAAAA
Sbjct:  843 EEVAGFKAELERLRAACAEKDVELANKSKELGQQAGIIDYINKLSSNAAAEAAAA 897
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig731.16181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYP7_9PHAE1.890e-1858.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ54_ECTSI1.340e-1078.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig731contigL-elsbetiae_contig731:567..4388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2027
Cds size441
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig731.16181.1prot_L-elsbetiae_contig731.16181.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig731 567..2761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.399068-CDS-L-elsbetiae_contig731:566..7581622816814.399068-CDS-L-elsbetiae_contig731:566..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig731 567..758 +
1691683833.840898-CDS-L-elsbetiae_contig731:566..7581691683833.840898-CDS-L-elsbetiae_contig731:566..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig731 567..758 +
1622816814.4128768-CDS-L-elsbetiae_contig731:2512..27611622816814.4128768-CDS-L-elsbetiae_contig731:2512..2761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig731 2513..2761 +
1691683833.8495808-CDS-L-elsbetiae_contig731:2512..27611691683833.8495808-CDS-L-elsbetiae_contig731:2512..2761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig731 2513..2761 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.4232147-UTR-L-elsbetiae_contig731:2761..40411622816814.4232147-UTR-L-elsbetiae_contig731:2761..4041Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig731 2762..4041 +
1691683833.8578877-UTR-L-elsbetiae_contig731:2761..40411691683833.8578877-UTR-L-elsbetiae_contig731:2761..4041Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig731 2762..4041 +
1622816814.4334996-UTR-L-elsbetiae_contig731:4083..43881622816814.4334996-UTR-L-elsbetiae_contig731:4083..4388Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig731 4084..4388 +
1691683833.8662472-UTR-L-elsbetiae_contig731:4083..43881691683833.8662472-UTR-L-elsbetiae_contig731:4083..4388Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig731 4084..4388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig731.16181.1

>prot_L-elsbetiae_contig731.16181.1 ID=prot_L-elsbetiae_contig731.16181.1|Name=mRNA_L-elsbetiae_contig731.16181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
AEQRLARVSGEATEAQAAAAAARAAGRELKERAAAAAREAGLRRDEVSRL
KGEVERSRAACADKDLELASKSKELAQQSGIIDYINKLSSNAAAEAAAAE
KSSKIKGHKSAAPAAPTAAVVSARDAPGHGVGGRATQVPDSEGHQF*
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mRNA from alignment at L-elsbetiae_contig731:567..4388+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig731.16181.1 ID=mRNA_L-elsbetiae_contig731.16181.1|Name=mRNA_L-elsbetiae_contig731.16181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3822bp|location=Sequence derived from alignment at L-elsbetiae_contig731:567..4388+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGCAGAGGCTCGCGAGGGTATCGGGAGAGGCCACAGAGGCCCAGGC
CGCCGCCGCCGCCGCCAGAGCCGCCGGTCGGGAGTTGAAGGAGAGGGCGG
CGGCGGCGGCACGGGAGGCCGGGCTGAGGAGGGACGAGGTGTCGAGGCTC
AAGGGGGAGGTCGAGCGGTCCCGGGCGGCTTGTGCCGATAAGGTGGGGTT
GCTCAAAGCACTGCTGTGCGTGTATTTATGTGGAAGTGCGAAGTATTGCC
ATACGGCTTGTGCCGATAATGTCGGGTTGCTCAAAGCGCTGTGCGTGGAA
GTGCGAAGTATTGCCATACGGCTTGTGCCGGGAAGGTGGGGTGCCTCAAA
GCGCTATGCGTGGAAGTGCGAAGTGTCGCCACACGGCTTGTGCCGGGAAG
GTGCGGTGCCTCGAAGCGCGATTTGTTACCTACCATATACTTCTACATTA
CCGGCTGGTGCCGCGAAGTGTTACTCATATGTATGTAGGAATGTGTGTGA
AGTGTTACCTTTATGTACATTGCCGACGTTAACCAATGTTTTTAGAGTCT
CAGTATCTTCGACAGACGATGGGAGGTTCGCCTGCACTCCTCGTATTTAA
TTAGGCGCTACCAGTATATATCTCCTCACTTCCATGCGTGCTCTCTGCTG
TAGGCGAGAGCCGCGCATTGCCATCGGAAAGCACGGTGCGGAGCTTGCAG
TCGTTCGTGTACTCTCTCCCTCTGGTGTTGTACTTCTGGACGAGAGCTGC
ACGCAGCAGCAGCAACAACAGCGGCTATGTGATCCTCGACTGAATACAGT
CCAGCCACCCCGTTCCGTTATATCCGCTCGCTCACATACTCTACAGTTTT
TTTGGACTTGACATATAGAAGCGGCACGTCCTCCACATGTATAAAATTAT
ACGGACGTTGTAAGCATCCAAGCGCTCGAGAAGCGCTCTGTTTGCTTTTG
TTGGTACTCCGAGGTAAGTCTAGTCTATGTTCGGCGTTTTGGAACCCAGG
CATCTCGTGTCCACGCCTGTAATAGTGTAGTTGGTACCGACGATGATACA
ATGTTGGAAATTGTTGTTGATGTTGTTGTCGTTCTTCTTGCTTCTTCACA
CTCAAAACCGTTCCGATCTCTCCACCCAGTGCCTCCTCATGTCCGTACTG
TTTCAGCACTTGATGCGGTCAATTCCCGTGGTCACAGGCTATGCAACTTA
TACCTACAAAAAGTATACGAAAATAAAATGGACCCGAAGGGTCAGCGAAG
CGACACGAACCAAAGACAAGGCGCAAGCCGAAAGTACAAACAAACGGACA
CCCATAAGCCCCAGACAAGACAAGAAACAAACACTTCATCACTCCTTCGG
TGGTGGTGCAAGATGGTACAGCAGTGGGGGGGGAGGGAGGTTAGCCAATA
ATTGATTCAATCCCCAACATGTCGCGCTACTGCGTCCGCCTCCGCCCTCT
TGCGTACGTCGCGTGCAGTTTCGGTCGTTTTCGGCCTCGTTCTCCTGTTG
TGTTGTCGTGTTTTTTCTATTGTTGGGCCTTCATTCTTGTGCCAGGGGGC
CACATAAACCTCTCAGCTCCCCGCAGGAATGGGTTGCATCAAGGCCCGAA
TCCATGACGTGTGTTAAAAGATTTACCATCAGTCTGGTACTTGGGTTAAC
TTTTTACATCATGGCTGAGTGGTTTTAATCCCCTAACACGTGATCACGGA
AATTATATGCTGGATACCGAGCTCTCCCACTCGGCGTTTGTAAACAATCA
CGATAAATAGCTGGTCATTTCGTGGGGTCGGCCCGACGATGCGTCTGAAG
CCGAAATCCGACGGATCCTGATTTACTTCGGTTGCACTTTTTCACCGCCA
AATTATTAAGTTTGTAATTATCTCGCCGAAATGGGTGTTGCGTGGTGTGC
GCTCGTTCTTTGTTCCCTTTGTTGCGTTCCATCAAAAACTATTCAGGACC
TGGAGTTGGCGAGCAAGTCGAAGGAGCTCGCGCAACAATCGGGCATCATC
GACTACATCAACAAGCTCAGCAGCAACGCAGCCGCCGAGGCCGCCGCTGC
CGAAAAAAGCAGCAAGATAAAGGGCCACAAGAGCGCTGCTCCTGCCGCTC
CCACTGCCGCCGTCGTGTCCGCGCGAGACGCTCCCGGGCACGGCGTTGGT
GGTAGGGCCACCCAGGTACCCGATTCCGAGGGGCATCAGTTTTAAAACCC
TCAGCAATCATTTTTGGAAGCGTGGAGGGTCAGGACAAGGCATTATCTTG
CAATTACACACACGTACATACGTAGGTACGATAGGCACTACTGTACTGCA
GTGTGGTGGGAGGGGGGCTGGAGGATGGGGATTGCCCTCCACTGCTGCCG
TTGTCAATGGACTGTATTTCTGAGCGGTTGTGCCGTTGTTACGCTCCTTG
CTTTGTTTGGATAAGATTTATTCGAAATATGTGTTGTTTAAATCACTCCC
ATGTTCCGGGATACTTGACGAGGCTGATCGTCCGTAGCCGGCCGCGAACC
TCGGGTGGGCCTTGAACGACGGGGTCGAGAGGCCCCGGCTACGAGCGTGC
TCGTGGCGGCGAAGAAGTAATTGGCTGCGCGCTGCATTCTGCTTCGGCGA
AGGGAGTCGGTAAACACGCCCTTGTAGGTACACGTTTACATCACAGGTTC
TCTCCGGTATCGCCGCCTTGTGGTCTGGAGTGCACTGAGATCCGACCTAG
GTTTCCTATAAATACATACCATGGCACAGTTGGGGTCGGTCTTGTGCCGA
GGGTGGGGTAGAAGAGGCTCGGTTCACGTCAACGAAGAGGCAGGAGCATG
TATTTACACGTTTTTTGCGGGTTTGGTATCTATGTGCGTGCTCGTGGGCT
TCGCCGATCTTGGGGTCAAGCTTTACCGGTACATCCTGGTTCGGCCGCCG
ACGCGCACCCCCTCTCTGGCCAACCACGAGGAGGGGTTTCAGGCGAATCT
GTAGACGCATGTACGTGTACCAAACGCCCTCGGAGCGTCGCAAGCTTGCT
CTTCGATTCCTATCTTTGTCTGTGTATGTAGCTGAAGCAAAACGCACCGA
ACGCCGACGCTCCTACGGTGGCTGGTGGGAAGTTTTTTTTGTCCGAGGCT
TGATGTCGCTTCTCACCGCCATCAACGCCAGGTTTTGTTGTGACCTTAAC
TAAAAAGAAAACGGAGCTGACTCCGGATGTAAATATGTAGTCTACGTATG
TCCGTACTAAAGTATTTGGATCAGTATCGTTTTAGTTGTTACCGCGGTGG
TGTTGTAGCAGGGTCACGAGGGCATGCAGGCATATACTTGTGTGTGGCGT
TAAGCGGGAGCGTGCTCTGTGTCTGTTTTGAGGCGGCACCAAGGGTAGTC
TATAGATAGTCTAAATAACAAATAACCGGTGAATTTCTGATGTAGGCCCG
GCCGGCGTTAACCAATGGAGGACAAGAAAATGCACTATTATAGTCATTGA
TGTAGAATGAGAGATGCCCGAACCCGATAAAAGCTTCCACTGTTGTTGTG
TTGCGCGCAATGACAAGGGGGGCAATTGTTTTGTCGCCGAGATATTGATT
GTCTCACGTCTCACAACCTACAATATGTAGTCTATCTGGATACACTGCTG
TTGACTTGTGGTGATCGCGAAGGTTGGGAAACATATCGGCGTTGTCCTGA
GAGCCCGCGGGGAGGGCCGCCAAGGATAAACTCCCTGGAGACTTTGACTT
TTGGGGAAGGGAGTGACTGCGACACGCTGCTGTCGGAGCTAATTAATCAT
GTAGACATGCTTGCCACACAAGTCTATCTACATAGTCTATAGTACCGCTC
AAACACTGCGCATGTACAACCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig731:567..4388+

>mRNA_L-elsbetiae_contig731.16181.1 ID=mRNA_L-elsbetiae_contig731.16181.1|Name=mRNA_L-elsbetiae_contig731.16181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig731:567..4388+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGCAGAGGCTCGCGAGGGTATCGGGAGAGGCCACAGAGGCCCAGGC
CGCCGCCGCCGCCGCCAGAGCCGCCGGTCGGGAGTTGAAGGAGAGGGCGG
CGGCGGCGGCACGGGAGGCCGGGCTGAGGAGGGACGAGGTGTCGAGGCTC
AAGGGGGAGGTCGAGCGGTCCCGGGCGGCTTGTGCCGATAAGGCGGAGCA
GAGGCTCGCGAGGGTATCGGGAGAGGCCACAGAGGCCCAGGCCGCCGCCG
CCGCCGCCAGAGCCGCCGGTCGGGAGTTGAAGGAGAGGGCGGCGGCGGCG
GCACGGGAGGCCGGGCTGAGGAGGGACGAGGTGTCGAGGCTCAAGGGGGA
GGTCGAGCGGTCCCGGGCGGCTTGTGCCGATAAGGACCTGGAGTTGGCGA
GCAAGTCGAAGGAGCTCGCGCAACAATCGGGCATCATCGACTACATCAAC
AAGCTCAGCAGCAACGCAGCCGCCGAGGCCGCCGCTGCCGAAAAAAGCAG
CAAGATAAAGGGCCACAAGAGCGCTGCTCCTGCCGCTCCCACTGCCGCCG
TCGTGTCCGCGCGAGACGCTCCCGGGCACGGCGTTGGTGGTAGGGCCACC
CAGGTACCCGATTCCGAGGGGCATCAGTTTTAAGACCTGGAGTTGGCGAG
CAAGTCGAAGGAGCTCGCGCAACAATCGGGCATCATCGACTACATCAACA
AGCTCAGCAGCAACGCAGCCGCCGAGGCCGCCGCTGCCGAAAAAAGCAGC
AAGATAAAGGGCCACAAGAGCGCTGCTCCTGCCGCTCCCACTGCCGCCGT
CGTGTCCGCGCGAGACGCTCCCGGGCACGGCGTTGGTGGTAGGGCCACCC
AGGTACCCGATTCCGAGGGGCATCAGTTTTAA
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