mRNA_L-elsbetiae_contig731.16183.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig731.16183.1
Unique NamemRNA_L-elsbetiae_contig731.16183.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig731.16183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig731contigL-elsbetiae_contig731:30148..30862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size715
Cds size360
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.3608701-UTR-L-elsbetiae_contig731:30147..305021622816814.3608701-UTR-L-elsbetiae_contig731:30147..30502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig731 30148..30502 +
1691683833.8236418-UTR-L-elsbetiae_contig731:30147..305021691683833.8236418-UTR-L-elsbetiae_contig731:30147..30502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig731 30148..30502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.37115-CDS-L-elsbetiae_contig731:30502..308621622816814.37115-CDS-L-elsbetiae_contig731:30502..30862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig731 30503..30862 +
1691683833.8325953-CDS-L-elsbetiae_contig731:30502..308621691683833.8325953-CDS-L-elsbetiae_contig731:30502..30862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig731 30503..30862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig731.16183.1prot_L-elsbetiae_contig731.16183.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig731 30503..30862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig731.16183.1

>prot_L-elsbetiae_contig731.16183.1 ID=prot_L-elsbetiae_contig731.16183.1|Name=mRNA_L-elsbetiae_contig731.16183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MPPGKTDPDTWGGGGEVTNMYLRGSKKPQTLQAQGKGGGGRGTNTGTAAL
ATRRDTTGWPSKTSVAPPRLVCESIRTYLNLCSISRHTSRPKTRAKCPPI
SKLDGTPKWHLKARQRQMR*
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mRNA from alignment at L-elsbetiae_contig731:30148..30862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig731.16183.1 ID=mRNA_L-elsbetiae_contig731.16183.1|Name=mRNA_L-elsbetiae_contig731.16183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=715bp|location=Sequence derived from alignment at L-elsbetiae_contig731:30148..30862+ (Laminarionema elsbetiae ELsaHSoW15)
CAATATACTCCGGGATATCGGGGAAACAGCGAAGCAGATTGCGTGCAGCC
GGTCGACGTCCCCGCTTATACACACGGCGGCGCACAGCGAGCCTTCGAAG
TACCGCGTGGCCTACGAGCAGAGGCGATGCACACATTTAAGGGCTGCGAG
AATACAACCCCAGTATGGCAGCTCGGTGTACAGCTGCTGCTGCCGCCGCT
TCCCCTGCACGGCACACCGCCCTCTCTCTTCGCCTTCCTACCGAGAACCC
ACCACACGCGACATGGAAAAAGAGAAAATACAAATAAAATAATCAATCGA
TCCCGCGCAGCATTCCTTGTGAAAGCGATCCCCTCGCATAGCTGACACCA
AGAAAATGCCGCCTGGCAAAACCGACCCAGACACATGGGGGGGGGGGGGT
GAAGTCACAAATATGTACCTCCGCGGCAGCAAAAAGCCCCAAACTCTTCA
AGCGCAGGGTAAGGGTGGGGGAGGGAGGGGCACAAATACGGGCACAGCGG
CGCTTGCAACCCGCCGAGACACAACCGGTTGGCCCTCGAAGACATCCGTT
GCCCCACCGCGACTGGTCTGCGAAAGCATCAGGACATACTTAAACTTGTG
CAGTATCTCACGTCACACAAGCAGGCCAAAGACGCGCGCAAAATGCCCAC
CAATATCTAAACTTGATGGCACCCCAAAATGGCATCTCAAAGCGCGACAA
AGGCAAATGCGTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig731:30148..30862+

>mRNA_L-elsbetiae_contig731.16183.1 ID=mRNA_L-elsbetiae_contig731.16183.1|Name=mRNA_L-elsbetiae_contig731.16183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig731:30148..30862+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCTGGCAAAACCGACCCAGACACATGGGGGGGGGGGGGTGAAGT
CACAAATATGTACCTCCGCGGCAGCAAAAAGCCCCAAACTCTTCAAGCGC
AGGGTAAGGGTGGGGGAGGGAGGGGCACAAATACGGGCACAGCGGCGCTT
GCAACCCGCCGAGACACAACCGGTTGGCCCTCGAAGACATCCGTTGCCCC
ACCGCGACTGGTCTGCGAAAGCATCAGGACATACTTAAACTTGTGCAGTA
TCTCACGTCACACAAGCAGGCCAAAGACGCGCGCAAAATGCCCACCAATA
TCTAAACTTGATGGCACCCCAAAATGGCATCTCAAAGCGCGACAAAGGCA
AATGCGTTAAATGCCGCCTGGCAAAACCGACCCAGACACATGGGGGGGGG
GGGGTGAAGTCACAAATATGTACCTCCGCGGCAGCAAAAAGCCCCAAACT
CTTCAAGCGCAGGGTAAGGGTGGGGGAGGGAGGGGCACAAATACGGGCAC
AGCGGCGCTTGCAACCCGCCGAGACACAACCGGTTGGCCCTCGAAGACAT
CCGTTGCCCCACCGCGACTGGTCTGCGAAAGCATCAGGACATACTTAAAC
TTGTGCAGTATCTCACGTCACACAAGCAGGCCAAAGACGCGCGCAAAATG
CCCACCAATATCTAAACTTGATGGCACCCCAAAATGGCATCTCAAAGCGC
GACAAAGGCAAATGCGTTAA
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