mRNA_L-elsbetiae_contig7309.16180.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7309.16180.1
Unique NamemRNA_L-elsbetiae_contig7309.16180.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7309.16180.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 7.490e-9
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:  264 RQGWCGHPGCTTQPTFGMVGSKQREFCSKHAQQGMINVTSKR 389
            R   CGH  CT +PT+G+ GSK+REFCS+HA+ GM+NV +KR
Sbjct:   60 RMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
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BLAST of mRNA_L-elsbetiae_contig7309.16180.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.200e-8
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 3 
Query:  276 CGHPGCTTQPTFGMVGSKQREFCSKHAQQGMINVTSKR 389
            CGH  CT +PT+G+ GSK+REFCS+HA+ GM+NV +KR
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
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BLAST of mRNA_L-elsbetiae_contig7309.16180.1 vs. uniprot
Match: D8LCI2_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.190e-6
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 3 
Query:  276 CGHPGCTTQPTFGMVGSKQREFCSKHAQQGMINVTSKR 389
            CGHPGC    ++G+ G+K+REFC +HA+ GM++V SKR
Sbjct:    6 CGHPGCGKHSSYGVKGTKEREFCGRHAKMGMVDVRSKR 43
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BLAST of mRNA_L-elsbetiae_contig7309.16180.1 vs. uniprot
Match: D7FNJ9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ9_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.450e-5
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:  276 CGHPGCTTQPTFGMVGSKQREFCSKHAQQGMINVTSKR 389
            CG P C TQ  +G  GSK+ +FC++HA  GM+NVT+K+
Sbjct:   10 CGFPSCLTQANYGANGSKKAQFCARHADDGMVNVTAKK 47
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BLAST of mRNA_L-elsbetiae_contig7309.16180.1 vs. uniprot
Match: A0A6H5L2L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L0_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.260e-5
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:  276 CGHPGCTTQPTFGMVGSKQREFCSKHAQQGMINVTSKR 389
            CG P C TQ  +G  GSK+ +FC++HA  GM+NVT+K+
Sbjct:  360 CGFPSCQTQANYGANGSKKAQFCARHADDGMVNVTAKK 397
[Close]
BLAST of mRNA_L-elsbetiae_contig7309.16180.1 vs. uniprot
Match: D7G985_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G985_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 3.570e-5
Identity = 19/36 (52.78%), Postives = 30/36 (83.33%), Query Frame = 3 
Query:  276 CGHPGCTTQPTFGMVGSKQREFCSKHAQQGMINVTS 383
            CGH GC  +P++G  GSK+REFC++H+QQGM+++ +
Sbjct:    9 CGHLGCMKRPSYGTDGSKKREFCAQHSQQGMVSMAN 44
[Close]
BLAST of mRNA_L-elsbetiae_contig7309.16180.1 vs. uniprot
Match: D8LCH9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH9_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 9.270e-5
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:  276 CGHPGCTTQPTFGMVGSKQREFCSKHAQQGMINV 377
            C H GCTT+  FG+ GSK+ EFCS+HA+ GM+++
Sbjct:    9 CDHVGCTTRANFGVPGSKKAEFCSRHAEDGMVDL 42
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7309.16180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE7.490e-959.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI1.200e-863.16EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LCI2_ECTSI1.190e-655.26EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2... [more]
D7FNJ9_ECTSI2.450e-552.63EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L2L0_9PHAE3.260e-552.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G985_ECTSI3.570e-552.78EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LCH9_ECTSI9.270e-555.88EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7309contigL-elsbetiae_contig7309:2946..4762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size470
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7309.16180.1prot_L-elsbetiae_contig7309.16180.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7309 2946..4661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.299268-CDS-L-elsbetiae_contig7309:2945..30641622816814.299268-CDS-L-elsbetiae_contig7309:2945..3064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7309 2946..3064 +
1691683833.7779884-CDS-L-elsbetiae_contig7309:2945..30641691683833.7779884-CDS-L-elsbetiae_contig7309:2945..3064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7309 2946..3064 +
1622816814.310942-CDS-L-elsbetiae_contig7309:3391..34841622816814.310942-CDS-L-elsbetiae_contig7309:3391..3484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7309 3392..3484 +
1691683833.7961562-CDS-L-elsbetiae_contig7309:3391..34841691683833.7961562-CDS-L-elsbetiae_contig7309:3391..3484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7309 3392..3484 +
1622816814.3217804-CDS-L-elsbetiae_contig7309:4504..46611622816814.3217804-CDS-L-elsbetiae_contig7309:4504..4661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7309 4505..4661 +
1691683833.805564-CDS-L-elsbetiae_contig7309:4504..46611691683833.805564-CDS-L-elsbetiae_contig7309:4504..4661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7309 4505..4661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.3322537-UTR-L-elsbetiae_contig7309:4661..47621622816814.3322537-UTR-L-elsbetiae_contig7309:4661..4762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7309 4662..4762 +
1691683833.8146632-UTR-L-elsbetiae_contig7309:4661..47621691683833.8146632-UTR-L-elsbetiae_contig7309:4661..4762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7309 4662..4762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7309.16180.1

>prot_L-elsbetiae_contig7309.16180.1 ID=prot_L-elsbetiae_contig7309.16180.1|Name=mRNA_L-elsbetiae_contig7309.16180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MSVVIEQLTQGKRKLRHKAKPPRRRSVLAAGSRQHNYAESPTREPSKRQR
KASLPVTGAGRGCLGPAAAPSQRRLQVLSTKDLAGDVAAKGGAATQGAPR
SRRLAWSAASRGSSARSTPSKV*
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mRNA from alignment at L-elsbetiae_contig7309:2946..4762+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7309.16180.1 ID=mRNA_L-elsbetiae_contig7309.16180.1|Name=mRNA_L-elsbetiae_contig7309.16180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1817bp|location=Sequence derived from alignment at L-elsbetiae_contig7309:2946..4762+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGTGGTTATCGAACAGTTAACGCAAGGCAAGCGGAAGCTTCGGCA
CAAAGCCAAGCCCCCCCGCCGGAGGAGTGTTCTTGCAGCTGGTAGCCGGC
AACACAACTACGCGGAAAGGTGAGATTTTGCATCAAGTATGATCGTTGCT
ACGCGGATCAACCCGCAGTGATCGCGAGGGGTGTAGCCTGGCATTGCCGT
ACTTTCTTGGAGTTCGTCACTAGTTTAGTTTTTCTTCAATCTTGGTTGCG
AATGGCCCGTGGCCACTTTTTGTCCACGCTAGCCTCCTTGCCCTACAAGA
GATGGTAGTGACCCACACTATCCACGAGCGGGTAGAGTCATTGTAACGCA
GAGATTCGTGTGCTACCATTTATCCGTCATCAATCGGCTGATGTTCGACA
CGAGCTTCCATGTTGCGTCGACTCGGTGATCGGTTTCGTTTGTCAGCCCC
ACAAGAGAGCCGTCCAAGCGCCAACGCAAGGCGTCACTGCCGGTGACAGG
GGCAGGACGTGGGTGTCTTGGACCGGCAGCAGCCCCAAGGTGAGTTATTT
TCCGCTTTGATCGCTTGTCGGCGTTGTTTCTCCCGTTCGTAGTGATGATT
TCCACGCTCTCTCACCCATGGACAGCTAACCGGCCGTCGTCTCGCCGAGC
CAATGAGTCGAAGATGCTTGGTTGTGAGGCCCTTCCGGCAGTGGGTAGTG
GGCTATGTGTAAGATAAAACCGCAGGCACTGATAAGTACCGTGAACATGT
CGTAGATGTTGTGTACTGGTACAAGTTTGTGCGGCCACCAACACTGCGCG
CGCGAAACCACGAAAACATATATAACAACACAGCTTGTAAGTTGCACATG
AAGGGAAGCAACGCGATTTTCAGTCCGGTGTGTAGCTTGTAGGAGTACAT
ACAAGGAAAGTTCCTTCGACTACACGAGACGCCGCCGCTAATAGCCCAAC
TCCAACCAACAAGCGTAGTCCGCGGGAAGTAAAATATAAAATGTTTGCCG
AAACGAAAGCAGCCCGCCCAGTTTCAGGTTGTACTCATTTACATTCGGCG
TAGTTTGTCAATCCCGGGTGATTGCATGCATGGATGCTGATGATTTCATT
TTCTTGAAAACCATGATTGATGGGCATGCGAATGGTTTAGGTGGGAACGA
GGTTTGGCGTAGTACACGCTGCAAATGACATAGACGAGTCTGATGATGAT
ACGTTCGATGCAATGAGAAACCGAAATTGGAGCCAACCGCTGAAACTAAT
TTAAAGTCGTAGTACCAACATCATCAGTGGCAAGGCAGAAGAAGGCTTCG
GGATCGTCGTGGATTTCAGGGAAATACATTCTACAAACCGTTCGGGATGA
AGAAGCAAAGCCAAACCCGCGAGGCGCGGAAGAAGGGAGTACCGTAATCG
AGAGAGCTATAGAATGGCAAAACAGACGCTTCTGGGGGGTTCCTTTCGTG
GTTGTCTGTTGTGTGTCCTGTTGATACCGCTCTTGATCGTGGTGAAACTG
AGTTTAATACGAATTAAGTCAACGCTTTGATGCTTCTCTGTGCTTTGTGC
TCCCTGCAGTCAACGGCGGTTGCAAGTTCTGAGCACGAAAGACCTAGCGG
GCGATGTGGCCGCCAAGGGTGGTGCGGCCACCCAGGGTGCACCACGCAGC
CGACGTTTGGCATGGTCGGCAGCAAGCAGAGGGAGTTCTGCTCGAAGCAC
GCCCAGCAAGGTATGATCAACGTCACCAGCAAGAGGTGCGGCCACCCAGG
GTGCTCCACACAGCCGAATTTCGGCATGATCGGCAGCAACAAGGCGGAGT
TCTGCTCGAAGCACGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7309:2946..4762+

>mRNA_L-elsbetiae_contig7309.16180.1 ID=mRNA_L-elsbetiae_contig7309.16180.1|Name=mRNA_L-elsbetiae_contig7309.16180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig7309:2946..4762+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGTGGTTATCGAACAGTTAACGCAAGGCAAGCGGAAGCTTCGGCA
CAAAGCCAAGCCCCCCCGCCGGAGGAGTGTTCTTGCAGCTGGTAGCCGGC
AACACAACTACGCGGAAAGATGTCCGTGGTTATCGAACAGTTAACGCAAG
GCAAGCGGAAGCTTCGGCACAAAGCCAAGCCCCCCCGCCGGAGGAGTGTT
CTTGCAGCTGGTAGCCGGCAACACAACTACGCGGAAAGCCCCACAAGAGA
GCCGTCCAAGCGCCAACGCAAGGCGTCACTGCCGGTGACAGGGGCAGGAC
GTGGGTGTCTTGGACCGGCAGCAGCCCCAAGCCCCACAAGAGAGCCGTCC
AAGCGCCAACGCAAGGCGTCACTGCCGGTGACAGGGGCAGGACGTGGGTG
TCTTGGACCGGCAGCAGCCCCAAGTCAACGGCGGTTGCAAGTTCTGAGCA
CGAAAGACCTAGCGGGCGATGTGGCCGCCAAGGGTGGTGCGGCCACCCAG
GGTGCACCACGCAGCCGACGTTTGGCATGGTCGGCAGCAAGCAGAGGGAG
TTCTGCTCGAAGCACGCCCAGCAAGGTATGATCAACGGCGGTTGCAAGTT
CTGAGCACGAAAGACCTAGCGGGCGATGTGGCCGCCAAGGGTGGTGCGGC
CACCCAGGGTGCACCACGCAGCCGACGTTTGGCATGGTCGGCAGCAAGCA
GAGGGAGTTCTGCTCGAAGCACGCCCAGCAAGGTATGA
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