mRNA_L-elsbetiae_contig7308.16179.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7308.16179.1
Unique NamemRNA_L-elsbetiae_contig7308.16179.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7308.16179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7308contigL-elsbetiae_contig7308:2164..3685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size579
Cds size567
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7308.16179.1prot_L-elsbetiae_contig7308.16179.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7308 2175..3685 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.2260337-UTR-L-elsbetiae_contig7308:2163..21741622816814.2260337-UTR-L-elsbetiae_contig7308:2163..2174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7308 2164..2174 +
1691683833.7338197-UTR-L-elsbetiae_contig7308:2163..21741691683833.7338197-UTR-L-elsbetiae_contig7308:2163..2174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7308 2164..2174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.241152-CDS-L-elsbetiae_contig7308:2174..22231622816814.241152-CDS-L-elsbetiae_contig7308:2174..2223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7308 2175..2223 +
1691683833.7458045-CDS-L-elsbetiae_contig7308:2174..22231691683833.7458045-CDS-L-elsbetiae_contig7308:2174..2223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7308 2175..2223 +
1622816814.2520506-CDS-L-elsbetiae_contig7308:2708..31431622816814.2520506-CDS-L-elsbetiae_contig7308:2708..3143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7308 2709..3143 +
1691683833.7559426-CDS-L-elsbetiae_contig7308:2708..31431691683833.7559426-CDS-L-elsbetiae_contig7308:2708..3143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7308 2709..3143 +
1622816814.2629642-CDS-L-elsbetiae_contig7308:3602..36851622816814.2629642-CDS-L-elsbetiae_contig7308:3602..3685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7308 3603..3685 +
1691683833.7653368-CDS-L-elsbetiae_contig7308:3602..36851691683833.7653368-CDS-L-elsbetiae_contig7308:3602..3685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7308 3603..3685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7308.16179.1

>prot_L-elsbetiae_contig7308.16179.1 ID=prot_L-elsbetiae_contig7308.16179.1|Name=mRNA_L-elsbetiae_contig7308.16179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=189bp
MIQCDSDCSEELCCVSGIGGGDIGGAPVPTVAPAAGETVAETTGATAEPT
AAGTIAGALCNSIGCPNGFVPIPEAETTECIGVCSTDQCCQAFCSGLACP
NNFIPIPEAETAQCDGNICTVDQCCESFCSFFACPNNFIPVEDADMIECG
SDCSEQLCCVSGIDGGDTDGAPEPTVAPVAGETPAETTG
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mRNA from alignment at L-elsbetiae_contig7308:2164..3685+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7308.16179.1 ID=mRNA_L-elsbetiae_contig7308.16179.1|Name=mRNA_L-elsbetiae_contig7308.16179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1522bp|location=Sequence derived from alignment at L-elsbetiae_contig7308:2164..3685+ (Laminarionema elsbetiae ELsaHSoW15)
AGGACGCCGACATGATCCAGTGCGACAGTGACTGCAGCGAAGAACTGTGC
TGTGTCTCCGGTAAGGCTCCCTGGCTGATGTTAGCGCTGTGTGTTGATGC
CTCTGCCGGCTTGTACACCGTAGGATGCCGCGACGCCAGCCTAGGATATA
TGCCCTGGATCCTGAGGTGTCGTTGAGAGTCATGCCACTGTAGGGATAGC
ACTGTTTTGGCTGAATTATGTCTGTCTGGGGTGCCTTTGGAGCCACCCAA
GATAAGCGGCAAGGACAAGTCATATTTTTATTTTAGGTCGGGAATTCACT
TCCTCATCGTGGGGTGCTTTTATATTTCCCCCGCGTTGATTTTTCAGACA
CTTTTTTGGGTACCTCTATCGTGGCATAACTCGTGAAGCGCAACGAGCTA
CCTCTCGGGCGACGCGTGTTTGTCCGGACTTGGTATTCTTTTTGGTTGGC
AGTTCGTCGAGAGTAACCAAAACAACAGAAACCCTGTCGATTTAAACTGG
CCGTCTATCGTTCACCAATCAATGATGGATGGATTAATGATGCAGGTATT
GGCGGCGGTGACATTGGCGGCGCACCCGTGCCTACTGTTGCCCCAGCTGC
CGGAGAAACGGTGGCGGAGACCACTGGGGCGACCGCTGAACCGACTGCTG
CTGGAACTATCGCCGGTGCTCTCTGCAACTCCATCGGTTGCCCGAATGGC
TTCGTCCCCATCCCTGAGGCTGAGACGACCGAGTGCATCGGCGTCTGCAG
CACCGACCAGTGTTGCCAGGCCTTCTGCTCAGGCTTAGCCTGCCCTAACA
ACTTCATCCCCATCCCTGAGGCTGAGACGGCCCAGTGCGACGGTAACATC
TGCACCGTCGACCAGTGTTGCGAGTCCTTCTGCTCCTTCTTCGCCTGCCC
CAACAACTTCATCCCCGTGGAGGACGCCGACATGATCGAGTGTGGTAGTG
ACTGCAGCGAACAACTGTGCTGTGTCTCCGGTAAGGCTCCCTGACTTGTG
GTAGTGACTGCAGCGAACAACTGTGCTGTGTCTCCGGTAAGGCTCCCTGA
CTTGTATTGGCGCAGTGTCTTACTGCCTCTGCCGGCTTGTACATCGTAGG
ATGCCGCAACCCTAGCCTTGGGTATGCGCTGGTTCCCGACGTGTTGTTTT
ATGTATTTTGTTGAGCGAAAGGCAGTGCGTGTCGTCCGAACCTCTTGCGC
GTGCGTGACTTGATCGTCCGTCTGAAGCGCGTGTGTCCGGACCTGTTACA
CTCGCCTTGCACTGGCCGGACCGGTGTGGAATGGGAACGAGAACTAGTAT
TTGTTTTGGGCAGGTCGTCGAGAGTGACAACACGTATACCGTCGACTTAC
CTGACCGTCTTTTAAAATAAAACAAAACCAAAGATGGAACCTGGCCGTCT
TTTGTCCACCGATCGATGATGAATAAATGAATGATGCAGGCATTGACGGC
GGCGACACTGACGGCGCGCCCGAGCCTACTGTTGCCCCAGTTGCCGGAGA
AACGCCGGCCGAGACCACTGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7308:2164..3685+

>mRNA_L-elsbetiae_contig7308.16179.1 ID=mRNA_L-elsbetiae_contig7308.16179.1|Name=mRNA_L-elsbetiae_contig7308.16179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig7308:2164..3685+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCCAGTGCGACAGTGACTGCAGCGAAGAACTGTGCTGTGTCTCCGA
TGATCCAGTGCGACAGTGACTGCAGCGAAGAACTGTGCTGTGTCTCCGGT
ATTGGCGGCGGTGACATTGGCGGCGCACCCGTGCCTACTGTTGCCCCAGC
TGCCGGAGAAACGGTGGCGGAGACCACTGGGGCGACCGCTGAACCGACTG
CTGCTGGAACTATCGCCGGTGCTCTCTGCAACTCCATCGGTTGCCCGAAT
GGCTTCGTCCCCATCCCTGAGGCTGAGACGACCGAGTGCATCGGCGTCTG
CAGCACCGACCAGTGTTGCCAGGCCTTCTGCTCAGGCTTAGCCTGCCCTA
ACAACTTCATCCCCATCCCTGAGGCTGAGACGGCCCAGTGCGACGGTAAC
ATCTGCACCGTCGACCAGTGTTGCGAGTCCTTCTGCTCCTTCTTCGCCTG
CCCCAACAACTTCATCCCCGTGGAGGACGCCGACATGATCGAGTGTGGTA
GTGACTGCAGCGAACAACTGTGCTGTGTCTCCGGTATTGGCGGCGGTGAC
ATTGGCGGCGCACCCGTGCCTACTGTTGCCCCAGCTGCCGGAGAAACGGT
GGCGGAGACCACTGGGGCGACCGCTGAACCGACTGCTGCTGGAACTATCG
CCGGTGCTCTCTGCAACTCCATCGGTTGCCCGAATGGCTTCGTCCCCATC
CCTGAGGCTGAGACGACCGAGTGCATCGGCGTCTGCAGCACCGACCAGTG
TTGCCAGGCCTTCTGCTCAGGCTTAGCCTGCCCTAACAACTTCATCCCCA
TCCCTGAGGCTGAGACGGCCCAGTGCGACGGTAACATCTGCACCGTCGAC
CAGTGTTGCGAGTCCTTCTGCTCCTTCTTCGCCTGCCCCAACAACTTCAT
CCCCGTGGAGGACGCCGACATGATCGAGTGTGGTAGTGACTGCAGCGAAC
AACTGTGCTGTGTCTCCGGCATTGACGGCGGCGACACTGACGGCGCGCCC
GAGCCTACTGTTGCCCCAGTTGCCGGAGAAACGCCGGCCGAGACCACTGG
AGCATTGACGGCGGCGACACTGACGGCGCGCCCGAGCCTACTGTTGCCCC
AGTTGCCGGAGAAACGCCGGCCGAGACCACTGGA
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