mRNA_L-elsbetiae_contig7304.16174.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7304.16174.1
Unique NamemRNA_L-elsbetiae_contig7304.16174.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7304.16174.1 vs. uniprot
Match: A0A6H5JCY2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.740e-16
Identity = 136/280 (48.57%), Postives = 153/280 (54.64%), Query Frame = -1 
Query:  249 RQSQPQAVERFSQYGARFNARPKTAPGTAAQARSSRGLPSRGFLSLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAVDAGGRETRGEAAASRGRRGREPEPRKNPAPKRTPVPPRALPLVGPAALAATINRTLTVTTGRAVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGN---GGTDAETTAATSPTYSETWSWENPETSP--VRMPNLHQSSGSEDPSGSEDDEGFGL-GFRVDADYEKFILQRRSPSTSALKARSAMASAPG 1070
            RQ+QPQA +RFSQY ARFN  P+ A    A A SS   P RG  SL       XXXXXXXXXXXXXXXXXXXXXXXXX   +     G R  R +    R  +G  P P            P  LPL GP+ALAATIN TLTVTTGR  GE                     XXXXXXXXXXX       G D + T    P    +  WE+P  SP    MPNLHQSSGSE PSGSEDDEGFGL G  ++  Y KF+L RRS  ++  K  ++  S PG
Sbjct:   78 RQTQPQANQRFSQYLARFNMSPRQA---VAAAISS---PRRGAKSLSNNVFFAXXXXXXXXXXXXXXXXXXXXXXXXXVNGDDGKAGGARLPRRQRDRERNAKGSSPPPS-----------PSLLPLTGPSALAATINSTLTVTTGRLAGERAAGESITTSDSSFTSDSLSGXXXXXXXXXXXXXXXXAAGDDGDVT----PPPGHSLPWEHPPASPPPACMPNLHQSSGSEGPSGSEDDEGFGLCGGSIE--YRKFLL-RRSTLSAGAKETASRVSTPG 333
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7304.16174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCY2_9PHAE6.740e-1648.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7304contigL-elsbetiae_contig7304:1107..2395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1289
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7304.16174.1prot_L-elsbetiae_contig7304.16174.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7304 1646..2359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.8559458-UTR-L-elsbetiae_contig7304:1106..16451622816813.8559458-UTR-L-elsbetiae_contig7304:1106..1645Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 1107..1645 +
1691683833.5157006-UTR-L-elsbetiae_contig7304:1106..16451691683833.5157006-UTR-L-elsbetiae_contig7304:1106..1645Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 1107..1645 +
1622816813.8781662-UTR-L-elsbetiae_contig7304:2359..23951622816813.8781662-UTR-L-elsbetiae_contig7304:2359..2395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 2360..2395 +
1691683833.5380688-UTR-L-elsbetiae_contig7304:2359..23951691683833.5380688-UTR-L-elsbetiae_contig7304:2359..2395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 2360..2395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.867418-CDS-L-elsbetiae_contig7304:1645..23591622816813.867418-CDS-L-elsbetiae_contig7304:1645..2359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 1646..2359 +
1691683833.5271056-CDS-L-elsbetiae_contig7304:1645..23591691683833.5271056-CDS-L-elsbetiae_contig7304:1645..2359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 1646..2359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7304.16174.1

>prot_L-elsbetiae_contig7304.16174.1 ID=prot_L-elsbetiae_contig7304.16174.1|Name=mRNA_L-elsbetiae_contig7304.16174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MPPAPAAAAAAAAAVCVGGRFGRAYGLPHGPAGGDRQGAVDGGRERRRPH
QRQRARRHGRALRCRVLSRFRLSSPAATGRRRLPPCFSSACVDSNLADAD
AAAAAAAAADTAAAATASGSGGIGGSSAAAAEREEAPARKASGAPRLRRS
TGGRFGSGVKPRAVLGEALDGLGLALSLLGSGGHGRHPYRLRGGRREGGR
RRGVGGGDGGRRHGRRHGGSPWLRSGHGVVAPYPARS*
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mRNA from alignment at L-elsbetiae_contig7304:1107..2395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7304.16174.1 ID=mRNA_L-elsbetiae_contig7304.16174.1|Name=mRNA_L-elsbetiae_contig7304.16174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1289bp|location=Sequence derived from alignment at L-elsbetiae_contig7304:1107..2395+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCGGGCGCGGCCATCGGGGCTTCCGCGCACGTGGCCAGCCTCCTCCG
CGCCGGCGGCGGCGGCGGGGGAGCCGCGGAGGGCTGCACGGCGAGCGGCC
CCGCCTCTCCCATCGACGTCGACCGCGGGATCCGCGGCGGCAGCCACTGG
CTCTGCGACGGCGGCGGCGGCGGCGCCAACCCTTCGCGGCCCCTGAAAAA
GGAGCGGGAAGCGCCGAAGCCCGCCGCCGTGACACTGAGCGAACCTCCTC
CCGGCGCCGACGCCATGGCCGACCGGGCCTTGAGCGCCGACGTGCTCGGG
CTCCTCCGCTGCAGGATGAACTTCTCGTAGTCGGCGTCCACGCGGAACCC
CAGCCCGAAGCCCTCGTCGTCCTCGCTGCCGCTGGGGTCCTCGCTGCCGC
TGGACTGGTGGAGGTTCGGCATGCGCACCGGTGACGTCTCCGGGTTCTCC
CACGACCAGGTCTCGGAGTAGGTGGGGCTGGTGGCGGCCGTGGTCTCGGC
GTCGGTGCCGCCGTTGCCGACCGCGAAGCCGCCGTGGTGATGCCCCCCGC
TCCCGCCGCCGCTGCCGCCGCCGCTGCTGCCGTTTGTGTTGGAGGACGAT
TCGGCCGTGCTTATGGTCTCCCCCACGGCCCTGCCGGTGGTGACCGTCAG
GGTGCGGTTGATGGTGGCCGCGAGCGCCGCCGGCCCCACCAGCGGCAGCG
CGCGCGGCGGCACGGGCGTGCGCTTCGGTGCCGGGTTCTTTCTCGGTTCC
GGCTCTCGTCCCCGGCGGCCACGGGACGCCGCCGCCTCCCCCCGTGTTTC
TCTTCCGCCTGCGTCGACAGCAACCTCGCTGATGCTGATGCTGCTGCTGC
TGCTGCTGCTGCTGCTGATACTGCCGCTGCCGCTACCGCGAGCGGCAGCG
GTGGCATCGGCGGATCTTCCGCCGCCGCCGCCGAGCGAGAGGAAGCCCCT
GCTCGGAAGGCCTCTGGAGCTCCGCGCTTGCGCCGCAGTACCGGGGGCCG
TTTTGGGTCTGGCGTTAAACCGCGCGCCGTACTGGGAGAAGCGCTCGACG
GCCTGGGGCTGGCTCTGTCGCTGCTGGGAAGCGGGGGCCACGGTCGTCAC
CCGTACCGCCTTCGCGGCGGTCGTCGAGAAGGAGGGCGGCGGCGCGGCGT
CGGCGGGGGCGACGGTGGTCGCCGGCATGGCCGCCGGCATGGCGGTTCTC
CTTGGCTTCGTTCGGGGCACGGGGTCGTCGCCCCATATCCCGCTCGAAGT
TGACGACGACGACGGCATATCGAGGCTAAGAGGCCGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7304:1107..2395+

>mRNA_L-elsbetiae_contig7304.16174.1 ID=mRNA_L-elsbetiae_contig7304.16174.1|Name=mRNA_L-elsbetiae_contig7304.16174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig7304:1107..2395+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCCGCTCCCGCCGCCGCTGCCGCCGCCGCTGCTGCCGTTTGTGT
TGGAGGACGATTCGGCCGTGCTTATGGTCTCCCCCACGGCCCTGCCGGTG
GTGACCGTCAGGGTGCGGTTGATGGTGGCCGCGAGCGCCGCCGGCCCCAC
CAGCGGCAGCGCGCGCGGCGGCACGGGCGTGCGCTTCGGTGCCGGGTTCT
TTCTCGGTTCCGGCTCTCGTCCCCGGCGGCCACGGGACGCCGCCGCCTCC
CCCCGTGTTTCTCTTCCGCCTGCGTCGACAGCAACCTCGCTGATGCTGAT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGATACTGCCGCTGCCGCTACCGC
GAGCGGCAGCGGTGGCATCGGCGGATCTTCCGCCGCCGCCGCCGAGCGAG
AGGAAGCCCCTGCTCGGAAGGCCTCTGGAGCTCCGCGCTTGCGCCGCAGT
ACCGGGGGCCGTTTTGGGTCTGGCGTTAAACCGCGCGCCGTACTGGGAGA
AGCGCTCGACGGCCTGGGGCTGGCTCTGTCGCTGCTGGGAAGCGGGGGCC
ACGGTCGTCACCCGTACCGCCTTCGCGGCGGTCGTCGAGAAGGAGGGCGG
CGGCGCGGCGTCGGCGGGGGCGACGGTGGTCGCCGGCATGGCCGCCGGCA
TGGCGGTTCTCCTTGGCTTCGTTCGGGGCACGGGGTCGTCGCCCCATATC
CCGCTCGAAGTTGAATGCCCCCCGCTCCCGCCGCCGCTGCCGCCGCCGCT
GCTGCCGTTTGTGTTGGAGGACGATTCGGCCGTGCTTATGGTCTCCCCCA
CGGCCCTGCCGGTGGTGACCGTCAGGGTGCGGTTGATGGTGGCCGCGAGC
GCCGCCGGCCCCACCAGCGGCAGCGCGCGCGGCGGCACGGGCGTGCGCTT
CGGTGCCGGGTTCTTTCTCGGTTCCGGCTCTCGTCCCCGGCGGCCACGGG
ACGCCGCCGCCTCCCCCCGTGTTTCTCTTCCGCCTGCGTCGACAGCAACC
TCGCTGATGCTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGATACTGCC
GCTGCCGCTACCGCGAGCGGCAGCGGTGGCATCGGCGGATCTTCCGCCGC
CGCCGCCGAGCGAGAGGAAGCCCCTGCTCGGAAGGCCTCTGGAGCTCCGC
GCTTGCGCCGCAGTACCGGGGGCCGTTTTGGGTCTGGCGTTAAACCGCGC
GCCGTACTGGGAGAAGCGCTCGACGGCCTGGGGCTGGCTCTGTCGCTGCT
GGGAAGCGGGGGCCACGGTCGTCACCCGTACCGCCTTCGCGGCGGTCGTC
GAGAAGGAGGGCGGCGGCGCGGCGTCGGCGGGGGCGACGGTGGTCGCCGG
CATGGCCGCCGGCATGGCGGTTCTCCTTGGCTTCGTTCGGGGCACGGGGT
CGTCGCCCCATATCCCGCTCGAAGTTGA
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