mRNA_L-elsbetiae_contig7304.16176.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7304.16176.1
Unique NamemRNA_L-elsbetiae_contig7304.16176.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7304.16176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7304contigL-elsbetiae_contig7304:7566..8342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.80771-CDS-L-elsbetiae_contig7304:7565..77711622816813.80771-CDS-L-elsbetiae_contig7304:7565..7771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 7566..7771 +
1691683833.4936435-CDS-L-elsbetiae_contig7304:7565..77711691683833.4936435-CDS-L-elsbetiae_contig7304:7565..7771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 7566..7771 +
1622816813.8207526-CDS-L-elsbetiae_contig7304:8269..83421622816813.8207526-CDS-L-elsbetiae_contig7304:8269..8342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 8270..8342 +
1691683833.5062046-CDS-L-elsbetiae_contig7304:8269..83421691683833.5062046-CDS-L-elsbetiae_contig7304:8269..8342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 8270..8342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7304.16176.1prot_L-elsbetiae_contig7304.16176.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7304 7566..8342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7304.16176.1

>prot_L-elsbetiae_contig7304.16176.1 ID=prot_L-elsbetiae_contig7304.16176.1|Name=mRNA_L-elsbetiae_contig7304.16176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MNLPSQARAATAAAGGAGSGIVEPSAMMGVLCWIRTTEQHPRGRSPTGKR
EQASRSSQRTRWWARVKCRGWVPRLGPRRQKKCFPPVSELVPP
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mRNA from alignment at L-elsbetiae_contig7304:7566..8342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7304.16176.1 ID=mRNA_L-elsbetiae_contig7304.16176.1|Name=mRNA_L-elsbetiae_contig7304.16176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=777bp|location=Sequence derived from alignment at L-elsbetiae_contig7304:7566..8342+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCTGCCAAGTCAGGCGAGAGCGGCAACAGCAGCAGCCGGAGGCGC
GGGAAGCGGTATCGTCGAGCCCTCGGCGATGATGGGGGTTTTGTGTTGGA
TCCGGACGACCGAGCAGCATCCTCGGGGGAGAAGCCCGACAGGAAAGCGG
GAGCAAGCGTCGCGATCAAGCCAGAGGACTAGGTGGTGGGCGCGTGTCAA
GTGCAGGTATGTACAGCAGTGCATATTAGCCTAAATAGCGCGTCGGTACA
GCGAGGGGAGGAAGGGGTGTCTTCCTGTGTGCCGAGCCGTGACGGGGGGA
CCTACCATTGGACAGAAAGGAATGGCTCGGTGGCGGACAAGTTAGTTTTG
AGCAAGTACGCCGTGGCCTTCTTGTGGTTCTCGGGGCATCAAGTTTCCTG
TGTTGAGTGGAGTTGCGTCTTCTTTGCTGAATTGGTTGCCAATTTTCAAT
GACTCTCCTCACTGGTATGTATAACAACACAGAGGTAGATTTGTTTACGA
CGCCGTAGTGAGTGAGTCCATGGAACGTGAGGTTACGCCCGTCGTTGCTT
CACTACTACCACTGCTGTTGGATGAACAACGCGTTTCTTGTTTTCAGCTA
CAGAGCGCCATGTACTCAATACGACTGAACCAGAAGTCAAATTACGTGTG
TAGCTCACACGTCCCCCAATTCACCTTTCTCTCCTCCCGCTGTACCACAT
GCAGGGGGTGGGTGCCCCGCCTGGGACCTAGACGACAAAAAAAATGCTTC
CCTCCAGTTTCGGAGCTTGTCCCACCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7304:7566..8342+

>mRNA_L-elsbetiae_contig7304.16176.1 ID=mRNA_L-elsbetiae_contig7304.16176.1|Name=mRNA_L-elsbetiae_contig7304.16176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig7304:7566..8342+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCTGCCAAGTCAGGCGAGAGCGGCAACAGCAGCAGCCGGAGGCGC
GGGAAGCGGTATCGTCGAGCCCTCGGCGATGATGGGGGTTTTGTGTTGGA
TCCGGACGACCGAGCAGCATCCTCGGGGGAGAAGCCCGACAGGAAAGCGG
GAGCAAGCGTCGCGATCAAGCCAGAGGACTAGGTGGTGGGCGCGTGTCAA
GTGCAGATGAATCTGCCAAGTCAGGCGAGAGCGGCAACAGCAGCAGCCGG
AGGCGCGGGAAGCGGTATCGTCGAGCCCTCGGCGATGATGGGGGTTTTGT
GTTGGATCCGGACGACCGAGCAGCATCCTCGGGGGAGAAGCCCGACAGGA
AAGCGGGAGCAAGCGTCGCGATCAAGCCAGAGGACTAGGTGGTGGGCGCG
TGTCAAGTGCAGGGGGTGGGTGCCCCGCCTGGGACCTAGACGACAAAAAA
AATGCTTCCCTCCAGTTTCGGAGCTTGTCCCACCCGGGGTGGGTGCCCCG
CCTGGGACCTAGACGACAAAAAAAATGCTTCCCTCCAGTTTCGGAGCTTG
TCCCACCC
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