mRNA_L-elsbetiae_contig730.16171.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig730.16171.1
Unique NamemRNA_L-elsbetiae_contig730.16171.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig730.16171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig730contigL-elsbetiae_contig730:21967..23768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1802
Cds size1170
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.633683-UTR-L-elsbetiae_contig730:21966..225981622816813.633683-UTR-L-elsbetiae_contig730:21966..22598Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig730 21967..22598 +
1691683833.3635054-UTR-L-elsbetiae_contig730:21966..225981691683833.3635054-UTR-L-elsbetiae_contig730:21966..22598Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig730 21967..22598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.6444376-CDS-L-elsbetiae_contig730:22598..237681622816813.6444376-CDS-L-elsbetiae_contig730:22598..23768Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig730 22599..23768 +
1691683833.374166-CDS-L-elsbetiae_contig730:22598..237681691683833.374166-CDS-L-elsbetiae_contig730:22598..23768Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig730 22599..23768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig730.16171.1prot_L-elsbetiae_contig730.16171.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig730 22599..23768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig730.16171.1

>prot_L-elsbetiae_contig730.16171.1 ID=prot_L-elsbetiae_contig730.16171.1|Name=mRNA_L-elsbetiae_contig730.16171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=390bp
MALESRVWAANPFCHVLRVTACLLPHHPTCYRSRRSLLRQLRGGFALFSC
QVFAGGGGGGGGGGTSALQRSMAYESVSERSGWEERRSEMPIGLGEEAMR
LAFQSTSRGAWADWLRTPLLGAVAQGNVSSATALLKAGASSVLEQEPGSP
AHRTMMHAAAEGGSAEIARALLAHSADHDAGAGAQTTPLHVAAERGHAAV
ARVLLRAGAETDGDWPMAPLHLACRGGHHELAADLLMNGARVNALTFFHS
TALCLAASKGHIETTRVLMRASADPEYRVAVDCRTALAAAATSGHGHVVR
QLVADGAEVNARSLGWTALHLVSTKCHISLEVVRTLIGLGADVNAAGPER
TAPLHAAARSNHALEIKALAEAGADIEGRNVREETPLHVA
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mRNA from alignment at L-elsbetiae_contig730:21967..23768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig730.16171.1 ID=mRNA_L-elsbetiae_contig730.16171.1|Name=mRNA_L-elsbetiae_contig730.16171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1802bp|location=Sequence derived from alignment at L-elsbetiae_contig730:21967..23768+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGAGCCCCTTAACACTTGCACCGCGTGGTACCGGCGTGTTTCCACGTT
TTCACACGCCAACGCACACACACGAGCATTCAATCGTACACCGCTGGTAT
GTAAGACGGCGTCAGCTACATCTGCGCCGGCGCGCCGTCACGTTCGATCA
CGCCATTTTTTTCGAAACACCTCGCCGCCGCCAAGCCAAGCGACGGTGGT
ACTCCAGCAGCACTCGTGCCCGCCGCCGCACGAGCTGCCGAAGGCCGCAC
AACAGAGTCTGCTGAGACCCGCAGAGCAGAGCCCGCTGTTTGGCAGCAGC
AATTTTGGCATAGCGATATCACATCCCTTCGATAATTTGTTTGGTACATA
AGCAGCAATCTGTTGGCATTGGCACAGAGATATGTATCACACCCCTTCTC
TATCACACCCCCTTGTTTTGTCATACCCTATTTAAGGAGTTGTTTGGGCA
GCGGCAATCGGTTGTCACATACGGTAGGTACCACACCCCTTCTTATCACA
CCCCCTTGGTCTGTCACACCCCCTGAGTCGGTATGGTTTCGACGTTAACA
CGAGAGCTGCGTTGGAGTCAGCGGTAGTTTGAAATGCACGCACGCGGGGG
CTGGGAAATGCGTGGTGTATCTACATACACACATGGCCCTTGAATCTCGA
GTCTGGGCTGCAAATCCCTTTTGCCATGTGCTGCGAGTGACAGCGTGCTT
GTTGCCCCACCACCCGACCTGCTACAGGTCTAGGCGATCTCTTCTCCGAC
AGCTGCGCGGTGGTTTCGCGCTCTTCAGCTGCCAAGTATTTGCCGGTGGT
GGTGGTGGTGGTGGTGGTGGTGGCACCTCGGCACTGCAGCGATCGATGGC
CTATGAATCAGTCTCCGAGCGTAGCGGGTGGGAGGAGCGCAGGAGCGAAA
TGCCGATCGGTTTGGGCGAGGAGGCCATGCGGCTGGCGTTCCAGTCGACG
TCGCGCGGGGCGTGGGCAGACTGGCTTCGCACGCCCCTCCTCGGCGCGGT
TGCCCAGGGGAACGTTTCTTCGGCCACCGCGCTCTTGAAGGCGGGCGCGA
GCTCCGTGCTGGAACAGGAGCCGGGGAGCCCGGCCCACCGGACCATGATG
CACGCCGCCGCGGAGGGAGGGAGCGCGGAGATCGCCAGGGCCCTGCTCGC
CCACTCCGCCGACCACGACGCCGGGGCCGGCGCCCAGACCACGCCCCTGC
ACGTCGCGGCCGAGCGGGGGCACGCCGCGGTGGCGCGGGTCCTCCTGCGG
GCCGGGGCCGAGACGGACGGCGACTGGCCCATGGCGCCGCTGCACCTGGC
GTGCAGGGGCGGGCACCACGAGCTCGCTGCGGACCTCCTCATGAACGGCG
CGAGGGTGAACGCCCTGACGTTCTTTCACTCAACGGCGCTCTGCCTGGCG
GCTTCCAAGGGCCACATCGAGACCACGAGGGTGCTCATGCGGGCATCCGC
GGACCCAGAGTACAGGGTGGCCGTGGACTGCCGCACTGCTCTGGCGGCGG
CGGCTACCTCGGGCCACGGCCACGTCGTGCGCCAGCTCGTCGCCGATGGC
GCCGAGGTCAACGCTCGAAGCCTTGGGTGGACGGCGCTTCATCTTGTCTC
CACGAAGTGCCACATCAGCCTGGAGGTCGTGCGCACGCTTATTGGTCTGG
GCGCCGACGTTAATGCTGCCGGCCCCGAAAGAACCGCGCCGCTCCACGCG
GCTGCTCGGAGCAACCACGCGCTCGAGATCAAGGCCCTCGCGGAGGCTGG
CGCCGACATCGAGGGCAGAAACGTCCGCGAGGAAACCCCGCTGCACGTCG
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig730:21967..23768+

>mRNA_L-elsbetiae_contig730.16171.1 ID=mRNA_L-elsbetiae_contig730.16171.1|Name=mRNA_L-elsbetiae_contig730.16171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2340bp|location=Sequence derived from alignment at L-elsbetiae_contig730:21967..23768+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCTTGAATCTCGAGTCTGGGCTGCAAATCCCTTTTGCCATGTGCT
GCGAGTGACAGCGTGCTTGTTGCCCCACCACCCGACCTGCTACAGGTCTA
GGCGATCTCTTCTCCGACAGCTGCGCGGTGGTTTCGCGCTCTTCAGCTGC
CAAGTATTTGCCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCACCTCGGC
ACTGCAGCGATCGATGGCCTATGAATCAGTCTCCGAGCGTAGCGGGTGGG
AGGAGCGCAGGAGCGAAATGCCGATCGGTTTGGGCGAGGAGGCCATGCGG
CTGGCGTTCCAGTCGACGTCGCGCGGGGCGTGGGCAGACTGGCTTCGCAC
GCCCCTCCTCGGCGCGGTTGCCCAGGGGAACGTTTCTTCGGCCACCGCGC
TCTTGAAGGCGGGCGCGAGCTCCGTGCTGGAACAGGAGCCGGGGAGCCCG
GCCCACCGGACCATGATGCACGCCGCCGCGGAGGGAGGGAGCGCGGAGAT
CGCCAGGGCCCTGCTCGCCCACTCCGCCGACCACGACGCCGGGGCCGGCG
CCCAGACCACGCCCCTGCACGTCGCGGCCGAGCGGGGGCACGCCGCGGTG
GCGCGGGTCCTCCTGCGGGCCGGGGCCGAGACGGACGGCGACTGGCCCAT
GGCGCCGCTGCACCTGGCGTGCAGGGGCGGGCACCACGAGCTCGCTGCGG
ACCTCCTCATGAACGGCGCGAGGGTGAACGCCCTGACGTTCTTTCACTCA
ACGGCGCTCTGCCTGGCGGCTTCCAAGGGCCACATCGAGACCACGAGGGT
GCTCATGCGGGCATCCGCGGACCCAGAGTACAGGGTGGCCGTGGACTGCC
GCACTGCTCTGGCGGCGGCGGCTACCTCGGGCCACGGCCACGTCGTGCGC
CAGCTCGTCGCCGATGGCGCCGAGGTCAACGCTCGAAGCCTTGGGTGGAC
GGCGCTTCATCTTGTCTCCACGAAGTGCCACATCAGCCTGGAGGTCGTGC
GCACGCTTATTGGTCTGGGCGCCGACGTTAATGCTGCCGGCCCCGAAAGA
ACCGCGCCGCTCCACGCGGCTGCTCGGAGCAACCACGCGCTCGAGATCAA
GGCCCTCGCGGAGGCTGGCGCCGACATCGAGGGCAGAAACGTCCGCGAGG
AAACCCCGCTGCACGTCGCCATGGCCCTTGAATCTCGAGTCTGGGCTGCA
AATCCCTTTTGCCATGTGCTGCGAGTGACAGCGTGCTTGTTGCCCCACCA
CCCGACCTGCTACAGGTCTAGGCGATCTCTTCTCCGACAGCTGCGCGGTG
GTTTCGCGCTCTTCAGCTGCCAAGTATTTGCCGGTGGTGGTGGTGGTGGT
GGTGGTGGTGGCACCTCGGCACTGCAGCGATCGATGGCCTATGAATCAGT
CTCCGAGCGTAGCGGGTGGGAGGAGCGCAGGAGCGAAATGCCGATCGGTT
TGGGCGAGGAGGCCATGCGGCTGGCGTTCCAGTCGACGTCGCGCGGGGCG
TGGGCAGACTGGCTTCGCACGCCCCTCCTCGGCGCGGTTGCCCAGGGGAA
CGTTTCTTCGGCCACCGCGCTCTTGAAGGCGGGCGCGAGCTCCGTGCTGG
AACAGGAGCCGGGGAGCCCGGCCCACCGGACCATGATGCACGCCGCCGCG
GAGGGAGGGAGCGCGGAGATCGCCAGGGCCCTGCTCGCCCACTCCGCCGA
CCACGACGCCGGGGCCGGCGCCCAGACCACGCCCCTGCACGTCGCGGCCG
AGCGGGGGCACGCCGCGGTGGCGCGGGTCCTCCTGCGGGCCGGGGCCGAG
ACGGACGGCGACTGGCCCATGGCGCCGCTGCACCTGGCGTGCAGGGGCGG
GCACCACGAGCTCGCTGCGGACCTCCTCATGAACGGCGCGAGGGTGAACG
CCCTGACGTTCTTTCACTCAACGGCGCTCTGCCTGGCGGCTTCCAAGGGC
CACATCGAGACCACGAGGGTGCTCATGCGGGCATCCGCGGACCCAGAGTA
CAGGGTGGCCGTGGACTGCCGCACTGCTCTGGCGGCGGCGGCTACCTCGG
GCCACGGCCACGTCGTGCGCCAGCTCGTCGCCGATGGCGCCGAGGTCAAC
GCTCGAAGCCTTGGGTGGACGGCGCTTCATCTTGTCTCCACGAAGTGCCA
CATCAGCCTGGAGGTCGTGCGCACGCTTATTGGTCTGGGCGCCGACGTTA
ATGCTGCCGGCCCCGAAAGAACCGCGCCGCTCCACGCGGCTGCTCGGAGC
AACCACGCGCTCGAGATCAAGGCCCTCGCGGAGGCTGGCGCCGACATCGA
GGGCAGAAACGTCCGCGAGGAAACCCCGCTGCACGTCGCC
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