mRNA_L-elsbetiae_contig7292.16162.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7292.16162.1
Unique NamemRNA_L-elsbetiae_contig7292.16162.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7292.16162.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 9.150e-43
Identity = 77/101 (76.24%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 MASSVVRDDRVRMSCRNGVFWVPVGREGKDVALLLEHLAIKLARVPTHKPHRCPDRFNGAEEALRHLSAVRTGNELRCLVVLDNVWDVKVVNAFASTGFHV 303
            +ASSVVRDDRVR   + G+FWVPVGREGKDVALLLEHLA++L+RVPT  P  CP+RF+GAEEALRHLS+V   + LRCLVVLDNVW+V+VVNAFASTGFHV
Sbjct:  284 IASSVVRDDRVRARFKRGIFWVPVGREGKDVALLLEHLAVELSRVPTDTPRSCPNRFSGAEEALRHLSSVCAEDGLRCLVVLDNVWNVEVVNAFASTGFHV 384
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BLAST of mRNA_L-elsbetiae_contig7292.16162.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.230e-19
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    4 ASSVVRDDRVRMSCRNGVFWVPVGREGKDVAL-LLEHLAIKLARVPTHKPHRCPDRFNGAEEALRHLSAVRTGNELRCLVVLDNVWDVKVVNAFASTGFH 300
            A +VVR + VR S ++G+FWV VG+ G    + LL+ LA  LA  P+H+PH  P  F   E A+ HL  VR    LRCLVVLD+VWD ++V  F   GFH
Sbjct:  283 AKAVVRCEDVRRSFKDGIFWVQVGQVGTGNPMALLQGLARDLAHAPSHQPHTVPHEFVDVEHAVSHLEGVRKERNLRCLVVLDDVWDAQIVPLFLCGGFH 382
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BLAST of mRNA_L-elsbetiae_contig7292.16162.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.610e-17
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    4 ASSVVRDDRVRMSCRNGVFWVPVGREGK-DVALLLEHLAIKLARVPTHKPHRCPDRFNGAEEALRHLSAVRTGNELRCLVVLDNVWDVKVVNAFASTGFH 300
            ASSVVR + VR S ++G+FWV VG+ G  +   LL+ LA  LA  P+++P   P  F   E  + HL  V     LRCLVVLDNVWD ++V  F  TGF 
Sbjct:  242 ASSVVRCENVRRSFKDGIFWVQVGQVGTGNPTALLKGLAEDLAHAPSNRPRTVPHEFRDVEHVVSHLVGVLEQGNLRCLVVLDNVWDREMVPLFLRTGFR 341
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BLAST of mRNA_L-elsbetiae_contig7292.16162.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-14
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    1 MASSVVRDDRVRMSCRNGVFWVPVGREGKDVAL-LLEHLAIKLARVPTHKPHRCPDRFNGAEEALRHLSAVRTGNELRCLVVLDNVWDVKVVNAFASTGFHV 303
            +AS+VVR   VR   R G+FWV VGR  K   L LL+ LA ++    T  PH  P   +G E+  +HL+AV +      LVVLD+VW+ +VV+AF   GF V
Sbjct:  256 LASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKV 357
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BLAST of mRNA_L-elsbetiae_contig7292.16162.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.490e-13
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:    1 MASSVVRDDRVRMSCRNGVFWVPVGREGKDVAL-LLEHLAIKLARVPTHKPHRCPDRFNGAEEALRHLSAVRTGNELRCLVVLDNVWDVKVVNAFASTGFHV 303
            +AS+ VR   VR   R G+FWV VGR  K   L LL+ LA  +   PT  PH  P   +  E+  +HL+AV +      LVVLD+VW+ +VV+AF   GF V
Sbjct:  310 LASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKV 411
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BLAST of mRNA_L-elsbetiae_contig7292.16162.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.160e-13
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    1 MASSVVRDDRVRMSCRNGVFWVPVGREGKDVAL-LLEHLAIKLARVPTHKPHRCPDRFNGAEEALRHLSAVRTGNELRCLVVLDNVWDVKVVNAFASTGFHV 303
            +AS+VVR   VR   R G+ WV VGR  K+  L LL+ LA ++   PT  PH  P   +  E+  +HL+AV +      LVVLD+VW+ +VV+AF   GF +
Sbjct:   95 LASAVVRMPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKL 196
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BLAST of mRNA_L-elsbetiae_contig7292.16162.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-12
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    1 MASSVVRDDRVRMSCRNGVFWVPVGREGKDVAL-LLEHLAIKLARVPTHKPHRCPDRFNGAEEALRHLSAVRTGNELRCLVVLDNVWDVKVVNAFASTGFHV 303
            +AS+VVR   VR   R G+FWV VGR  K   L LL+ LA  +   PT  P   P   +  E+  +HL+AV +    + LVVLD+VW+ +VV+AF   GF V
Sbjct:  293 LASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKV 394
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BLAST of mRNA_L-elsbetiae_contig7292.16162.1 vs. uniprot
Match: UPI00140227D3 (apoptotic protease-activating factor 1 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI00140227D3)

HSP 1 Score: 53.1 bits (126), Expect = 4.460e-5
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:    1 MASSVVRDDRVRMSC-RNGVFWVPVGREGKDVALL-LEHLAIKLARVPTHKPHRCPDRFNGAEEALRHLSAVRTGNELRCLVVLDNVWDVKVVNAF 282
            +A+  VRD ++   C   GVFWV VG+  K   L+ L++L  +L      +P R     +  E+A   L  + T +  RCL++LD+VWD +VV AF
Sbjct:  165 IAAEAVRDPKLVKECFPGGVFWVCVGQVDKPTLLIKLQNLCQRL------QPERERLDLHNLEQAKDTLRLILTRHHPRCLLLLDDVWDSRVVKAF 254
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7292.16162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FH19_ECTSI9.150e-4376.24NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LL58_ECTSI2.230e-1948.00NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5L982_9PHAE2.610e-1747.00NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KXS7_9PHAE2.600e-1444.12NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI4.490e-1343.14NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FUD7_ECTSI6.160e-1342.16NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI1.150e-1243.14NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
UPI00140227D34.460e-536.46apoptotic protease-activating factor 1 isoform X1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7292contigL-elsbetiae_contig7292:7401..8237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue1.3e-37
Seed eggNOG ortholog2880.D7FH19
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons2
Model size495
Cds size495
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.244284-CDS-L-elsbetiae_contig7292:7400..77791622816812.244284-CDS-L-elsbetiae_contig7292:7400..7779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 7401..7779 +
1691683832.1302674-CDS-L-elsbetiae_contig7292:7400..77791691683832.1302674-CDS-L-elsbetiae_contig7292:7400..7779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 7401..7779 +
1622816812.259013-CDS-L-elsbetiae_contig7292:8121..82371622816812.259013-CDS-L-elsbetiae_contig7292:8121..8237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 8122..8237 +
1691683832.144007-CDS-L-elsbetiae_contig7292:8121..82371691683832.144007-CDS-L-elsbetiae_contig7292:8121..8237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 8122..8237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7292.16162.1prot_L-elsbetiae_contig7292.16162.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7292 7401..8237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7292.16162.1

>prot_L-elsbetiae_contig7292.16162.1 ID=prot_L-elsbetiae_contig7292.16162.1|Name=mRNA_L-elsbetiae_contig7292.16162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MASSVVRDDRVRMSCRNGVFWVPVGREGKDVALLLEHLAIKLARVPTHKP
HRCPDRFNGAEEALRHLSAVRTGNELRCLVVLDNVWDVKVVNAFASTGFH
VGGGCAGGPAQSKWRLRCSARGRSAQGRTRLRHAALGFGHGRNSSQGPTF
GPGVVANGAREAARK
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mRNA from alignment at L-elsbetiae_contig7292:7401..8237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7292.16162.1 ID=mRNA_L-elsbetiae_contig7292.16162.1|Name=mRNA_L-elsbetiae_contig7292.16162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=837bp|location=Sequence derived from alignment at L-elsbetiae_contig7292:7401..8237+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTCGTCGGTGGTGCGAGATGATCGCGTTCGGATGAGCTGTAGGAA
TGGCGTGTTTTGGGTGCCCGTGGGGCGTGAGGGCAAGGACGTGGCGCTGC
TGCTCGAGCACCTAGCCATTAAGCTGGCGAGGGTGCCCACGCACAAGCCC
CACCGCTGCCCGGATAGGTTTAACGGCGCCGAGGAGGCTCTCCGACACCT
GTCTGCTGTTCGCACGGGGAACGAACTGAGGTGTTTGGTTGTGCTGGACA
ACGTGTGGGATGTGAAAGTGGTGAACGCCTTCGCGAGCACGGGCTTTCAT
GTCGGAGGAGGATGCGCTGGAGGTCCTGCGCAAAGCAAGTGGAGGCTACG
GTGTTCTGCCCGCGGAAGAAGCGCGCAAGGTATGAGTTCCCACATCATCA
TTTGCAGTGCACTCCGGTGGTTGTGAAACTCGAAACATGTTAAATATCTT
AACCTCCCAACCTAATAGCGTGGTCTTATATATGTAGATCGCAGTCCCGA
GGGCCTTGCGGCACCGCAGTTGCGAGCTGTGCTGTGTGCATGCCCCAGCA
CACATGGACTTATTATCTGAAAGCCAAGGGTTCCATCCCAGGCAGAAGCG
TCGGTGGCAACGTCAAGCGAAATCCGAAATCCGGTGGCCTCATGCAGTGG
GTAGCGTTGTCAGATCAAGTTTGCGCTCGTCCATCAAGTGCTTACCTTTC
CGTCAAATTCCTCGTTTGCAGGTCGCACGCGATTGCGGCATGCTGCCCTT
GGCTTTGGGCATGGTCGGAACTCTAGCCAAGGACCAACCTTTGGACCCGG
CGTCGTGGCGAACGGTGCACGAGAAGCTGCAAGGAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7292:7401..8237+

>mRNA_L-elsbetiae_contig7292.16162.1 ID=mRNA_L-elsbetiae_contig7292.16162.1|Name=mRNA_L-elsbetiae_contig7292.16162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig7292:7401..8237+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTCGTCGGTGGTGCGAGATGATCGCGTTCGGATGAGCTGTAGGAA
TGGCGTGTTTTGGGTGCCCGTGGGGCGTGAGGGCAAGGACGTGGCGCTGC
TGCTCGAGCACCTAGCCATTAAGCTGGCGAGGGTGCCCACGCACAAGCCC
CACCGCTGCCCGGATAGGTTTAACGGCGCCGAGGAGGCTCTCCGACACCT
GTCTGCTGTTCGCACGGGGAACGAACTGAGGTGTTTGGTTGTGCTGGACA
ACGTGTGGGATGTGAAAGTGGTGAACGCCTTCGCGAGCACGGGCTTTCAT
GTCGGAGGAGGATGCGCTGGAGGTCCTGCGCAAAGCAAGTGGAGGCTACG
GTGTTCTGCCCGCGGAAGAAGCGCGCAAGATGGCTTCGTCGGTGGTGCGA
GATGATCGCGTTCGGATGAGCTGTAGGAATGGCGTGTTTTGGGTGCCCGT
GGGGCGTGAGGGCAAGGACGTGGCGCTGCTGCTCGAGCACCTAGCCATTA
AGCTGGCGAGGGTGCCCACGCACAAGCCCCACCGCTGCCCGGATAGGTTT
AACGGCGCCGAGGAGGCTCTCCGACACCTGTCTGCTGTTCGCACGGGGAA
CGAACTGAGGTGTTTGGTTGTGCTGGACAACGTGTGGGATGTGAAAGTGG
TGAACGCCTTCGCGAGCACGGGCTTTCATGTCGGAGGAGGATGCGCTGGA
GGTCCTGCGCAAAGCAAGTGGAGGCTACGGTGTTCTGCCCGCGGAAGAAG
CGCGCAAGGTCGCACGCGATTGCGGCATGCTGCCCTTGGCTTTGGGCATG
GTCGGAACTCTAGCCAAGGACCAACCTTTGGACCCGGCGTCGTGGCGAAC
GGTGCACGAGAAGCTGCAAGGAAAGTCGCACGCGATTGCGGCATGCTGCC
CTTGGCTTTGGGCATGGTCGGAACTCTAGCCAAGGACCAACCTTTGGACC
CGGCGTCGTGGCGAACGGTGCACGAGAAGCTGCAAGGAAA
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