mRNA_L-elsbetiae_contig7292.16160.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7292.16160.1
Unique NamemRNA_L-elsbetiae_contig7292.16160.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Match: D7G4B1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4B1_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 2.000e-102
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1
Query:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 426
            MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVS+VPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY
Sbjct:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 142          
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Match: A0A835Z237_9STRA (Mitosis protein DIM1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z237_9STRA)

HSP 1 Score: 266 bits (681), Expect = 4.520e-90
Identity = 124/142 (87.32%), Postives = 134/142 (94.37%), Query Frame = 1
Query:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 426
            M+YLL HL +GWAVDQAI+ EEER V +RFGHD+D TCMQMDEVL+GIAEDVKNF  IYVVD+SQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFNNKQEMIDI+EVVYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:    1 MAYLLAHLTSGWAVDQAILKEEERAVVIRFGHDYDPTCMQMDEVLSGIAEDVKNFAVIYVVDISQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKQEMIDIIEVVYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Match: H3G9C0_PHYRM (Uncharacterized protein n=32 Tax=Oomycota TaxID=4762 RepID=H3G9C0_PHYRM)

HSP 1 Score: 263 bits (673), Expect = 7.500e-89
Identity = 118/142 (83.10%), Postives = 133/142 (93.66%), Query Frame = 1
Query:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 426
            MSYLLPHL +GWAVDQAI+NE +RVV +RFGHDHD TCMQMDEVL G+AEDVKNF AIYVVD+++VPDFN MYELYDPCTVMFFFRNKH+MIDLGTGNNNKI+WAFNNK EM+DI+E VYRGARKGRGLV++PKDYSTKY+Y
Sbjct:    1 MSYLLPHLESGWAVDQAILNEGDRVVVIRFGHDHDSTCMQMDEVLCGVAEDVKNFAAIYVVDITEVPDFNTMYELYDPCTVMFFFRNKHVMIDLGTGNNNKINWAFNNKSEMVDIIETVYRGARKGRGLVIAPKDYSTKYRY 142          
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Match: A0A7S3HQX3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQX3_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.660e-88
Identity = 119/142 (83.80%), Postives = 134/142 (94.37%), Query Frame = 1
Query:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 426
            MSYLLPHLR+GWAVDQAI+NEE +VV +RFGHD D TCM+MDE+L GIA+DVKNFC+IY+VD+S+VPDF  MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFNNKQEMIDI+E VYRGARKGRGLV+SPKDYSTKY+Y
Sbjct:   14 MSYLLPHLRSGWAVDQAILNEESKVVLIRFGHDWDTTCMEMDEILFGIADDVKNFCSIYLVDLSEVPDFTTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKQEMIDIIETVYRGARKGRGLVISPKDYSTKYRY 155          
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Match: A0A5D6XYK2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYK2_9STRA)

HSP 1 Score: 264 bits (675), Expect = 6.830e-88
Identity = 120/142 (84.51%), Postives = 133/142 (93.66%), Query Frame = 1
Query:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 426
            MSYLLPHL +GWAVDQAI+NE +RVV +RFGHDHD TCMQMDEVL+G+AEDVKNF  +YVVD++QVPDFN MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFNNK EMIDI+E VYRGARKGRGLV+SPKDYSTKY+Y
Sbjct:   87 MSYLLPHLESGWAVDQAILNEGDRVVVIRFGHDHDPTCMQMDEVLSGVAEDVKNFAVVYVVDITQVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKLEMIDIIETVYRGARKGRGLVISPKDYSTKYRY 228          
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Match: A0A7S2HED9_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2HED9_9STRA)

HSP 1 Score: 261 bits (666), Expect = 9.060e-88
Identity = 119/142 (83.80%), Postives = 132/142 (92.96%), Query Frame = 1
Query:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 426
            MSYLLPHL+TGW+VDQAI+NEE+RVV  RFGHD+D  CMQMDEVL GI +DVKNF  IYV+D+S+VPDFN MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFN+KQEMIDI+E VYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:    2 MSYLLPHLQTGWSVDQAILNEEDRVVVCRFGHDYDPVCMQMDEVLCGIVDDVKNFAVIYVIDISEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNSKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 143          
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Match: A0A812WHX6_SYMMI (YLS8 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812WHX6_SYMMI)

HSP 1 Score: 259 bits (661), Expect = 5.070e-87
Identity = 117/142 (82.39%), Postives = 132/142 (92.96%), Query Frame = 1
Query:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 426
            MSYLLPHL +GWAVDQAI+NEE+RVV +RFGHD D TCMQMDE+L  IA+DVKNF  IY VD+++VPDFN MYELYDPCTVMFF+RNKHIMIDLGTGNNNKI+WAFNNKQEMIDI+EVV+RGARKGRGLV+SPKDYSTKY+Y
Sbjct:    1 MSYLLPHLNSGWAVDQAILNEEDRVVVIRFGHDWDTTCMQMDEILCNIADDVKNFAVIYCVDITEVPDFNTMYELYDPCTVMFFYRNKHIMIDLGTGNNNKINWAFNNKQEMIDIIEVVFRGARKGRGLVISPKDYSTKYRY 142          
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Match: A0A0M0JAP0_9EUKA (Thioredoxin-like protein 4a n=2 Tax=Prymnesiales TaxID=73028 RepID=A0A0M0JAP0_9EUKA)

HSP 1 Score: 253 bits (646), Expect = 9.820e-85
Identity = 117/142 (82.39%), Postives = 131/142 (92.25%), Query Frame = 1
Query:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 426
            MSYL+PHL TGWAVDQAI++EE+RVV LRFGHD+D TCMQMDEVL GIAE VKN+  IY+VD+S+VPDFN MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WA  +KQEMIDI+E +YRGARKGRGLVVSPKDYSTKY+Y
Sbjct:    1 MSYLMPHLNTGWAVDQAILSEEDRVVVLRFGHDYDPTCMQMDEVLYGIAELVKNYAVIYLVDISEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAIPDKQEMIDIVETIYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Match: A0A482V1I6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V1I6_9ARCH)

HSP 1 Score: 253 bits (645), Expect = 1.400e-84
Identity = 114/142 (80.28%), Postives = 130/142 (91.55%), Query Frame = 1
Query:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 426
            MSYLLPHL +GWAVDQAI+NEE +VV +RFGHD D TCM+MDEVL  +AEDVKNF  IY+VD+S+VPDFN MYELYDPCTVMFFFRNKHIM+D+GTGNNNKI+WA NNKQE+IDI+E VYRGA+KGRGLV+SPKDYSTKYKY
Sbjct:    1 MSYLLPHLHSGWAVDQAILNEENKVVVIRFGHDWDPTCMEMDEVLFHLAEDVKNFAVIYLVDISEVPDFNTMYELYDPCTVMFFFRNKHIMVDMGTGNNNKINWALNNKQELIDIIETVYRGAKKGRGLVISPKDYSTKYKY 142          
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Match: A0A2V0P5X6_9CHLO (Thioredoxin n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5X6_9CHLO)

HSP 1 Score: 252 bits (643), Expect = 2.820e-84
Identity = 116/142 (81.69%), Postives = 129/142 (90.85%), Query Frame = 1
Query:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 426
            MSYLLPHLRTG+AVDQAI++EE+RVV +RFGHD D  CMQMDE+LAG AE +KNF   Y+VD+SQVPDFN MYELYDPCT+MFFFRNKHIMIDLGTGNNNKI+WA NNKQE IDI+E VYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:    1 MSYLLPHLRTGYAVDQAILSEEDRVVVIRFGHDWDPVCMQMDEILAGTAEQMKNFAVTYLVDISQVPDFNTMYELYDPCTIMFFFRNKHIMIDLGTGNNNKINWAMNNKQEFIDIVETVYRGARKGRGLVVSPKDYSTKYRY 142          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7292.16160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B1_ECTSI2.000e-10299.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z237_9STRA4.520e-9087.32Mitosis protein DIM1-domain-containing protein n=1... [more]
H3G9C0_PHYRM7.500e-8983.10Uncharacterized protein n=32 Tax=Oomycota TaxID=47... [more]
A0A7S3HQX3_9STRA1.660e-8883.80Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5D6XYK2_9STRA6.830e-8884.51Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2HED9_9STRA9.060e-8883.80Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]
A0A812WHX6_SYMMI5.070e-8782.39YLS8 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A81... [more]
A0A0M0JAP0_9EUKA9.820e-8582.39Thioredoxin-like protein 4a n=2 Tax=Prymnesiales T... [more]
A0A482V1I6_9ARCH1.400e-8480.28Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2V0P5X6_9CHLO2.820e-8481.69Thioredoxin n=1 Tax=Raphidocelis subcapitata TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7292contigL-elsbetiae_contig7292:169..4145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.4
Seed ortholog evalue1.1e-79
Seed eggNOG ortholog2880.D7G4B1
Preferred nameDIM1
KEGG koko:K12859
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005681,GO:0005682,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG3414@1,KOG3414@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-02_002020.1
Exons3
Model size429
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7292.16160.1prot_L-elsbetiae_contig7292.16160.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7292 169..4145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.1560757-CDS-L-elsbetiae_contig7292:168..2641622816812.1560757-CDS-L-elsbetiae_contig7292:168..264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 169..264 -
1691683832.0807967-CDS-L-elsbetiae_contig7292:168..2641691683832.0807967-CDS-L-elsbetiae_contig7292:168..264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 169..264 -
1622816812.1719766-CDS-L-elsbetiae_contig7292:905..10431622816812.1719766-CDS-L-elsbetiae_contig7292:905..1043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 906..1043 -
1691683832.0951147-CDS-L-elsbetiae_contig7292:905..10431691683832.0951147-CDS-L-elsbetiae_contig7292:905..1043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 906..1043 -
1622816812.1827164-CDS-L-elsbetiae_contig7292:3950..41451622816812.1827164-CDS-L-elsbetiae_contig7292:3950..4145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 3951..4145 -
1691683832.1038463-CDS-L-elsbetiae_contig7292:3950..41451691683832.1038463-CDS-L-elsbetiae_contig7292:3950..4145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 3951..4145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7292.16160.1

>prot_L-elsbetiae_contig7292.16160.1 ID=prot_L-elsbetiae_contig7292.16160.1|Name=mRNA_L-elsbetiae_contig7292.16160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAE
DVKNFCAIYVVDVSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNN
KISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY*
back to top

mRNA from alignment at L-elsbetiae_contig7292:169..4145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7292.16160.1 ID=mRNA_L-elsbetiae_contig7292.16160.1|Name=mRNA_L-elsbetiae_contig7292.16160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3977bp|location=Sequence derived from alignment at L-elsbetiae_contig7292:169..4145- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTATCTGCTGCCGCACTTGAGAACAGGGTGGGCTGTGGACCAGGC CATCATCAATGAGGAGGAAAGAGTGGTGTGCCTGAGGTTCGGGCACGACC ACGATGTGACCTGTATGCAGATGGACGAAGTTCTGGCCGGCATTGCTGAG GATGTCAAGAACTTTTGCGCCATCTACGTTGTTGACGTTTCCCAGGTAAA ATTACTAGCCAGGTTTTGAGTTTTGACGTCGGAGGAGAGGCGGCTGATTG GCATCCGATAGGTACCACCCTGTGACGGGAGGGCATAGGCGGCGCGAAAA ACGTCCAATCGATACACGCCAGGTTGTCCGTGTTGTGTATAATTTTAGTG TTCTACGGATTCACAGCAGTATGGGGTAGGGATGACGTTGTACCGTATAG ATACGACACAAGATAACACACCCCCTGGACCGAATTTCAAAGCTCAAGTA CTCCACAGCGAGAAAAGTGTCAGTCCCGATAAGGGCGGCGTTGGAAATAT CTTATCAAGAGCTTTCTGAAAACGTGTCCTTTGGTATTAGAGTCAATGCT CTTTGCGGAGTAACAGGGCTTTGAAAATCAGTCCAGGGGGTGTGTTATCT TGTGTCGTATACGGCTTATCACCCACCCCCCCCAGGACATCCGCGCCCTC CAGTAGTAGTGGTGCCTGTAAGCTATGTATCTATGCGAGGACATCGATGC CTGCCTTGGGGCAGAGGTAGAGGTGCATTATCAAGATGTTTCGTTTGTTT AGGTCAGCTACTGTGGTGGTACGAGAAGACGTTGCTTTTGTGAACATCTG GCCGGGAAAGAGAGTACATACTCATCACACGTGTTGCACGGGTCGCACAA CAACCACTCTTTTTTTTGTTTGTGTCTTCAAAATACAATCCCACGCAGCC CCTCCAGATTTTTTAGCACACCGGAAAGACCAGTTATTTCTCCAAAGCTA TTTGCTGTAGTGTTGATCCAAAACTGGCTAGCCGGCAGGGGGTTTCACTG TTTCAATACCCACCAACAGAGGGCCAAGTGGCAGATCGGTTGGAGAAACA CCAGCGCTCCCGTCTAAAGTCGCTCGATCAGACGCGGCGGAGGAACGTTT TCAGATAATTTTGGAGGCAGACAAGTAAGCGTGCTTTGCCCCTCTCTTGG TCAGAGACGCGGAGTCGGTTTGAGCGCCCTAGAGTCGATCCAAAAATAGC CAGCCCAGTGTCCCATCTGTGCTCATGCGAAGTACTCCATATATCTCTAC GGTCGCCCGAGTTTCCAGCGATTTGGTGATCTCCTGAGGCCAGCGCTCAC GATTGAAAGTGTCTCCAGAGCTGCGGAATTGAGCTGAAAAAAACAGCGAC TGCTGTTTCTGTTGAGCACCGTTCACTCAGCAGCTCTCCTCTTCAAAGAC AAATGACGCAATAAAGGCTCCTCGCGGGCGTAGGGGAATGGGTACCGTAG GTGACATAAGATAAGACACCCCCTGGACCGATATTGAAAGCTTGGTTACT CCGCAACGAATACAATTCTAACCACAAACGCCACATTTTCGGACAGCTCT CGACGAGATCTTTCCAACGCCACCCTTTTCGGGACTGACGCTCTGCTTGC TGTGGAGGACTTGAGCTTTGAAAATCGATCCAGGGGGTGTCTTATCTTAT GTCACCTACGGTACCCGGAGGTCTCCTGCTCTTTTCGTTGCAGCCCGTTG TGCGTGTGAGGAGTATCAGCGGTCACGAAGTGCACGGCCGCGCGGGCTCA GAGCAAAAATAAACGAGAGGGGACACGAAAACAAAAACCCCGCCCAACTC GAACACGCCTCGCTTTTTGAAGACCCTTTTTTCTAATTGCGAGAGGTGCA ACACGTGTGTCATTCCTGCGAGAACCCGGTACGGAACGCCCCGGCGTTGT TGGGGTACCAAGAAAGAGCCAGGGGGTGTATCCCGCGGGTGGTGATGTTT GCTGTTCCAGTTTCACGTTTACCCTCGCATAGCGTATAGAGGGGAGCGGA GGGCTCTTTTCTATCCGTGTCTGGGGCCAAATATTCACAATTTCAACCGG CACTTTGGTGCACTTTTCTCTGCGCACAGGTGGTTGTTCCGAAAACCGAA AGTACCGGCAAACGCCCTGTCTCCTGGCGCAGGTTCCTATGGAAATCGAT TTTTATTTTTTTCTTTGTTCGTGTTACATTTGCAGATAACCTGAATGTTT TGTTCGCTTTTTCCCGGGGTGGGTTTTCCTCGCAACACAATTCTGAGACC GGATTTGGACAGCTCTTGGAATTCCCCAGACGGAGTTTTTTTCCGATTTT GAATTAAGCAAATATTGAAGAAGTTATCGGCAAAAAAACTGGATTTTAGA AGCCATTTTGTTCGCTTTTTCCTGTGACAACAACCAACCGTACGATTTTA AAATAGACCGCGGCAATCGATTCCTCTCGCAAATTCCCAGACGGAACTTT TTTCCGATTTTCAAAAAAAACTCTGGTTCCCGAGATATTCCGTTTTTTGT CCAAAACCCAGATTTTTTTCCAGTCTCCAACATGGTTTTTCGAGGGGTGG CTCAGAAATTACTTGAAAATAGTGTACGGGTGTCCAAAATAATGAAAACA CATAATTTGTGCGCCTTGACGTGGGGATCACTAGCGTGCCTGAAATTCCG TCTGGTTCGATTTTCTTCAAAAGTTATGCACGAAAATCTGAATACACAAA TTGCCCCAGACAGACCATAGGTATACGTATTTTACCCAAATGATTGGCTT GTCTAGACTTTTCCTTCGAAAGTGATCGGTTTTGCAGGCGATAGAGTTGT TATTGTCGTTTGCTGTCGGTGGGAAGCTTTTGTCTGTGAACACCAGTGGA GCAACAAGCCAGGCACGCGCCGAAATGATCGTTATCGTCGCGTTCTTGCC GGCGGAAAGTGCCATGAGCGCAAAACCCTTTTTCAGTCCGTCAGAAGGCA GAATAACGACACAAATCGAGATGATAACTTCGTAGGGTTATGCAGCTCAG CAACTTAACCCAACGACCTCCAACTAGCCCCCGTCCGGCATCCTTCCCCG CTTGCTGCGTGGCCTCCTGCTGCCGTGTTTCCTATCTTTCCTCTGTGGCC AGGTGCCGGACTTTAACGACATGTACGAGCTGTACGACCCTTGCACCGTC ATGTTCTTCTTCCGCAACAAGCACATCATGATCGACCTCGGGACGGGAAA CAACAACAAGATCTCGTGGGCGTTCAACAACAAACAAGAGGTGCGCGGCC AAAGTTTCGGTACGGCACCCAGCTGTTTCAAAAAGCAAAATGCTGCTTTG GCGCTGTGGATCATTTTGCCACTTTTACCGCCTACTCCTGCCCAACATAC TTCGTCCGTCTTTGTAGTTATCGGGGGAGGCTAAGATAGGCCTCACAATG CCACCTCTTCTCAGCGTTGTTGTGGAGGTATGCGTGTGGAGACTGGATCC AGAGGTCACACTCTTGTTGTGTGTATCGAACGCATTCTGAGGCGTGGATG CCCTCTCGTGCATGGTATGTACTCCGAGAACCTCACGTTTCTATCCCCCT GTACGCAAACTGGCAGCAGGTACGCAAACTGGCAGCAGGTACGTCCATTC CAGACAAACGACATGGGCTGTGTGCGATCTTTTGCTAAACGCAGGCATTT CTTGGACGTATAGATACCCCAGAGGTTTGGTTGTTTTCTTTGTCAACGGC GGCCGTGGTTTTCACGTACTAGTACAGCAGTGGGTGTTCTCGAATCAATC TTGCTCCAAAGGTGCCGCCGAAGGCGAATGGGTTTTGTACAGAACTCGAA AGCTCTTGGCTGAGAGCCGACTCTAACCATTTAACCCTTGTCCACCTCTG CGCCGCCACTATGCCCCCACCCCCCTCGCAGATGATCGACATCATGGAGG TTGTGTACAGAGGCGCTCGGAAGGGACGAGGTCTCGTCGTGTCGCCGAAG GATTACTCCACCAAGTACAAGTACTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7292:169..4145-

>mRNA_L-elsbetiae_contig7292.16160.1 ID=mRNA_L-elsbetiae_contig7292.16160.1|Name=mRNA_L-elsbetiae_contig7292.16160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig7292:169..4145- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTATCTGCTGCCGCACTTGAGAACAGGGTGGGCTGTGGACCAGGC
CATCATCAATGAGGAGGAAAGAGTGGTGTGCCTGAGGTTCGGGCACGACC
ACGATGTGACCTGTATGCAGATGGACGAAGTTCTGGCCGGCATTGCTGAG
GATGTCAAGAACTTTTGCGCCATCTACGTTGTTGACGTTTCCCAGATGTC
GTATCTGCTGCCGCACTTGAGAACAGGGTGGGCTGTGGACCAGGCCATCA
TCAATGAGGAGGAAAGAGTGGTGTGCCTGAGGTTCGGGCACGACCACGAT
GTGACCTGTATGCAGATGGACGAAGTTCTGGCCGGCATTGCTGAGGATGT
CAAGAACTTTTGCGCCATCTACGTTGTTGACGTTTCCCAGGTGCCGGACT
TTAACGACATGTACGAGCTGTACGACCCTTGCACCGTCATGTTCTTCTTC
CGCAACAAGCACATCATGATCGACCTCGGGACGGGAAACAACAACAAGAT
CTCGTGGGCGTTCAACAACAAACAAGAGGTGCCGGACTTTAACGACATGT
ACGAGCTGTACGACCCTTGCACCGTCATGTTCTTCTTCCGCAACAAGCAC
ATCATGATCGACCTCGGGACGGGAAACAACAACAAGATCTCGTGGGCGTT
CAACAACAAACAAGAGATGATCGACATCATGGAGGTTGTGTACAGAGGCG
CTCGGAAGGGACGAGGTCTCGTCGTGTCGCCGAAGGATTACTCCACCAAG
TACAAGTACTAGATGATCGACATCATGGAGGTTGTGTACAGAGGCGCTCG
GAAGGGACGAGGTCTCGTCGTGTCGCCGAAGGATTACTCCACCAAGTACA
AGTACTAG
back to top