mRNA_L-elsbetiae_contig728.16146.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig728.16146.1
Unique NamemRNA_L-elsbetiae_contig728.16146.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig728.16146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig728contigL-elsbetiae_contig728:12813..14105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size586
Cds size585
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.8217351-CDS-L-elsbetiae_contig728:12813..131281622816810.8217351-CDS-L-elsbetiae_contig728:12813..13128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig728 12814..13128 -
1691683831.0579996-CDS-L-elsbetiae_contig728:12813..131281691683831.0579996-CDS-L-elsbetiae_contig728:12813..13128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig728 12814..13128 -
1622816810.8348153-CDS-L-elsbetiae_contig728:13835..141051622816810.8348153-CDS-L-elsbetiae_contig728:13835..14105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig728 13836..14105 -
1691683831.0691168-CDS-L-elsbetiae_contig728:13835..141051691683831.0691168-CDS-L-elsbetiae_contig728:13835..14105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig728 13836..14105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig728.16146.1prot_L-elsbetiae_contig728.16146.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig728 12814..14105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig728.16146.1

>prot_L-elsbetiae_contig728.16146.1 ID=prot_L-elsbetiae_contig728.16146.1|Name=mRNA_L-elsbetiae_contig728.16146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
ALARLDLAGRRCAARRKTVYLPHETREEEKMKSPRSRALSGAQGETLAGA
RARSFTTTATGAAARGGSKRRSPRALVPSSNHKGDLDALKESLLDTLGRT
DLRAIDDGLRGLSSQVEADLTLGGLGGVFSDEEDDSDSDDSDDSGGAGAG
AGGGAGSESERPGMLGARAGSRLNPGGNGGGDLGGGGMKNNGKTT
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mRNA from alignment at L-elsbetiae_contig728:12813..14105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig728.16146.1 ID=mRNA_L-elsbetiae_contig728.16146.1|Name=mRNA_L-elsbetiae_contig728.16146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1293bp|location=Sequence derived from alignment at L-elsbetiae_contig728:12813..14105- (Laminarionema elsbetiae ELsaHSoW15)
GCTCTTGCTAGGTTGGATTTAGCGGGCCGCCGCTGTGCTGCCAGAAGGAA
AACAGTGTATCTGCCACACGAAACGAGAGAGGAGGAAAAAATGAAGTCGC
CTCGAAGCAGAGCGCTGTCGGGCGCACAAGGGGAGACTCTGGCCGGTGCT
CGCGCTAGGAGCTTCACCACTACAGCCACCGGCGCTGCGGCGAGAGGGGG
CTCTAAAAGGCGCAGTCCAAGGGCGCTTGTGCCTTCCTCGAACCACAAGG
GAGATTTGGACGCCCTCAAGGTGCGCCGTTTGTGACTACTGACGGCTGTC
TTGTCTCTGTTCGGAGGAGTGTTCCTTTCCCCTGTTTGCATAACGGCACC
TAGCTCCTGCCTGTGCCTTTCTCTCCCGCTGTTCTCTGCTTCTTCAAATC
TTCTTGTGCATTGGATGGCTGGGCTGGACTGTGTCTCTGCGTGATGACAG
GACATGTTTTGGGGTAGACGCAGTCCTGTTCCGAGGATACTTCATATTGT
ACTCGTGTTTCCTGAAACCGTGGTTGCAGGTGACCTTCTACCGTGCAGCA
CCCCCCACACAGACAGTACTTGTAGTGAGATACGCGGCAGGGCATCATGC
CTACGACTTAGTCTCGGCAGCCGTGCAGCGTTTCCTACGACTGCGCGGGA
ACAAGACACGGCATAGCAGCAGCAGCAGTGCTGTAGTGTTCCCGCAGACA
GCACACAGCAGCAGTGCGTGAGTTCTTCAGCGCGGCGGGAGGTTACATGT
ATTTAGGAACGATGATGAGATCGTGCCCTGCCAACTGCTGTTGGAAGGAC
ATGCCATCCCCGGTGGTGCATGCACACACCCCACTGCGACCTCCGCTGAC
GAGCGACCGCGCTGGACACCCTGGCACAACAAGACCTGCTCTATCCCCCA
CCGCTATCTAGCATCGAGCGTCCACCCCATCACCCTCCCTCCCTGCCTCC
ATCCCTCCCTCCCTGCATCATGAGAAGGAATCTTTGTTGGATACCCTGGG
GCGCACCGACCTCCGAGCCATAGACGACGGCCTGCGGGGGCTGAGCTCTC
AGGTCGAGGCCGATCTGACCCTGGGAGGGCTCGGGGGCGTCTTCAGCGAC
GAGGAAGACGACTCCGATTCGGACGACTCAGATGATTCCGGCGGCGCCGG
CGCCGGCGCCGGCGGTGGCGCCGGCTCGGAGTCCGAGCGCCCGGGGATGC
TGGGCGCGAGGGCCGGGTCGCGCTTAAACCCCGGCGGGAACGGCGGCGGC
GATCTCGGCGGCGGCGGGATGAAGAACAACGGCAAGACGACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig728:12813..14105-

>mRNA_L-elsbetiae_contig728.16146.1 ID=mRNA_L-elsbetiae_contig728.16146.1|Name=mRNA_L-elsbetiae_contig728.16146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig728:12813..14105- (Laminarionema elsbetiae ELsaHSoW15)
GCTCTTGCTAGGTTGGATTTAGCGGGCCGCCGCTGTGCTGCCAGAAGGAA
AACAGTGTATCTGCCACACGAAACGAGAGAGGAGGAAAAAATGAAGTCGC
CTCGAAGCAGAGCGCTGTCGGGCGCACAAGGGGAGACTCTGGCCGGTGCT
CGCGCTAGGAGCTTCACCACTACAGCCACCGGCGCTGCGGCGAGAGGGGG
CTCTAAAAGGCGCAGTCCAAGGGCGCTTGTGCCTTCCTCGAACCACAAGG
GAGATTTGGACGCCCTCAAGGCTCTTGCTAGGTTGGATTTAGCGGGCCGC
CGCTGTGCTGCCAGAAGGAAAACAGTGTATCTGCCACACGAAACGAGAGA
GGAGGAAAAAATGAAGTCGCCTCGAAGCAGAGCGCTGTCGGGCGCACAAG
GGGAGACTCTGGCCGGTGCTCGCGCTAGGAGCTTCACCACTACAGCCACC
GGCGCTGCGGCGAGAGGGGGCTCTAAAAGGCGCAGTCCAAGGGCGCTTGT
GCCTTCCTCGAACCACAAGGGAGATTTGGACGCCCTCAAGGAATCTTTGT
TGGATACCCTGGGGCGCACCGACCTCCGAGCCATAGACGACGGCCTGCGG
GGGCTGAGCTCTCAGGTCGAGGCCGATCTGACCCTGGGAGGGCTCGGGGG
CGTCTTCAGCGACGAGGAAGACGACTCCGATTCGGACGACTCAGATGATT
CCGGCGGCGCCGGCGCCGGCGCCGGCGGTGGCGCCGGCTCGGAGTCCGAG
CGCCCGGGGATGCTGGGCGCGAGGGCCGGGTCGCGCTTAAACCCCGGCGG
GAACGGCGGCGGCGATCTCGGCGGCGGCGGGATGAAGAACAACGGCAAGA
CGACCGAATCTTTGTTGGATACCCTGGGGCGCACCGACCTCCGAGCCATA
GACGACGGCCTGCGGGGGCTGAGCTCTCAGGTCGAGGCCGATCTGACCCT
GGGAGGGCTCGGGGGCGTCTTCAGCGACGAGGAAGACGACTCCGATTCGG
ACGACTCAGATGATTCCGGCGGCGCCGGCGCCGGCGCCGGCGGTGGCGCC
GGCTCGGAGTCCGAGCGCCCGGGGATGCTGGGCGCGAGGGCCGGGTCGCG
CTTAAACCCCGGCGGGAACGGCGGCGGCGATCTCGGCGGCGGCGGGATGA
AGAACAACGGCAAGACGACC
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