prot_L-elsbetiae_contig7279.16143.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7279.16143.1
Unique Nameprot_L-elsbetiae_contig7279.16143.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length218
Homology
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BLAST of mRNA_L-elsbetiae_contig7279.16143.1 vs. uniprot
Match: D8LM40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM40_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 7.210e-42
Identity = 81/160 (50.62%), Postives = 105/160 (65.62%), Query Frame = 0 
Query:    2 WNILAALSATRESTFDYWNARVFLPLSGGLMVLPTAIVVSVWVDVANSTMSR----------------------RKLCSTLRALDPSSAAIADNVFKVSRSMGISLYAMFGAEVLLLSSQTRKSDPANLALTGMAGYSVAKCFLNRSIFKYLVQSAASKE 139
            W IL A     +     WNAR+F PL+ G ++LPTAIV+SVW+DVANS++SR                       KLC TLR L  +SA IAD VFKVSR+MGISLY +F    +LLSS+TRKSDP NLAL G+   S++KCFLN++IF+Y+V+SA +K+
Sbjct:   32 WKILTAAGMISDYVSASWNARLFFPLTEGFLILPTAIVISVWMDVANSSLSRLKAMTVQLCAVGLGLTACGSGAAKLCHTLRGLGENSANIADTVFKVSRAMGISLYGVFIGNTMLLSSRTRKSDPTNLALLGVTVSSLSKCFLNKAIFEYMVESARAKK 191
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BLAST of mRNA_L-elsbetiae_contig7279.16143.1 vs. uniprot
Match: A0A6H5KG93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG93_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.340e-23
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 0 
Query:   55 KLCSTLRALDPSSAAIADNVFKVSRSMGISLYAMFGAEVLLLSSQTRKSDPANLALTGMAGYSVAKCFLNRSIFKYLVQSAASKE 139
            KLC TLR L  +SA IA  VF+VSR+MGISLY +F  E +LLSS+TRKSDP NLAL G+   S++KCFLN++IF+Y+V+SA +K+
Sbjct:   21 KLCHTLRDLGENSAIIAHTVFRVSRAMGISLYGVFIGEAMLLSSRTRKSDPTNLALLGITVSSLSKCFLNKAIFEYMVESARAKK 105
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7279.16143.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM40_ECTSI7.210e-4250.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG93_9PHAE1.340e-2361.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..217
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 23..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..22
NoneNo IPR availableTMHMMTMhelixcoord: 22..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7279contigL-elsbetiae_contig7279:1484..4492 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7279.16143.1mRNA_L-elsbetiae_contig7279.16143.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7279 1418..4958 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7279.16143.1 ID=prot_L-elsbetiae_contig7279.16143.1|Name=mRNA_L-elsbetiae_contig7279.16143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
MWNILAALSATRESTFDYWNARVFLPLSGGLMVLPTAIVVSVWVDVANST
MSRRKLCSTLRALDPSSAAIADNVFKVSRSMGISLYAMFGAEVLLLSSQT
RKSDPANLALTGMAGYSVAKCFLNRSIFKYLVQSAASKESKGIRSGVASS
PQRMSVQRMSVQRVGHSTTRTDAAKAAAGDTHEQNENKHEKNGWMAGAGA
TNSFSLSNRPRKIAIEN*
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