mRNA_L-elsbetiae_contig7279.16143.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7279.16143.1
Unique NamemRNA_L-elsbetiae_contig7279.16143.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7279.16143.1 vs. uniprot
Match: D8LM40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM40_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 2.220e-47
Identity = 94/182 (51.65%), Postives = 122/182 (67.03%), Query Frame = 1 
Query:    4 DAGSTTIRVVLVAVAVDIISFMWNILAALSATRESTFDYWNARVFLPLSGGLMVLPTAIVVSVWVDVANSTMSR----------------------RKLCSTLRALDPSSAAIADNVFKVSRSMGISLYAMFGAEVLLLSSQTRKSDPANLALTGMAGYSVAKCFLNRSIFKYLVQSAASKE 483
            D+GSTTIRVVL +V +DI  + W IL A     +     WNAR+F PL+ G ++LPTAIV+SVW+DVANS++SR                       KLC TLR L  +SA IAD VFKVSR+MGISLY +F    +LLSS+TRKSDP NLAL G+   S++KCFLN++IF+Y+V+SA +K+
Sbjct:   10 DSGSTTIRVVLFSVLLDISCYAWKILTAAGMISDYVSASWNARLFFPLTEGFLILPTAIVISVWMDVANSSLSRLKAMTVQLCAVGLGLTACGSGAAKLCHTLRGLGENSANIADTVFKVSRAMGISLYGVFIGNTMLLSSRTRKSDPTNLALLGVTVSSLSKCFLNKAIFEYMVESARAKK 191
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BLAST of mRNA_L-elsbetiae_contig7279.16143.1 vs. uniprot
Match: A0A6H5KG93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG93_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.530e-22
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:  229 KLCSTLRALDPSSAAIADNVFKVSRSMGISLYAMFGAEVLLLSSQTRKSDPANLALTGMAGYSVAKCFLNRSIFKYLVQSAASKE 483
            KLC TLR L  +SA IA  VF+VSR+MGISLY +F  E +LLSS+TRKSDP NLAL G+   S++KCFLN++IF+Y+V+SA +K+
Sbjct:   21 KLCHTLRDLGENSAIIAHTVFRVSRAMGISLYGVFIGEAMLLSSRTRKSDPTNLALLGITVSSLSKCFLNKAIFEYMVESARAKK 105
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7279.16143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM40_ECTSI2.220e-4751.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG93_9PHAE4.530e-2261.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7279contigL-elsbetiae_contig7279:1418..4958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1186
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7279.16143.1prot_L-elsbetiae_contig7279.16143.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7279 1484..4492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.583008-UTR-L-elsbetiae_contig7279:1417..14831622816810.583008-UTR-L-elsbetiae_contig7279:1417..1483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7279 1418..1483 +
1691683830.9593697-UTR-L-elsbetiae_contig7279:1417..14831691683830.9593697-UTR-L-elsbetiae_contig7279:1417..1483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7279 1418..1483 +
1622816810.7120354-UTR-L-elsbetiae_contig7279:4492..49581622816810.7120354-UTR-L-elsbetiae_contig7279:4492..4958Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7279 4493..4958 +
1691683831.0162392-UTR-L-elsbetiae_contig7279:4492..49581691683831.0162392-UTR-L-elsbetiae_contig7279:4492..4958Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7279 4493..4958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.6527205-CDS-L-elsbetiae_contig7279:1483..16481622816810.6527205-CDS-L-elsbetiae_contig7279:1483..1648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7279 1484..1648 +
1691683830.971424-CDS-L-elsbetiae_contig7279:1483..16481691683830.971424-CDS-L-elsbetiae_contig7279:1483..1648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7279 1484..1648 +
1622816810.6661987-CDS-L-elsbetiae_contig7279:2815..29061622816810.6661987-CDS-L-elsbetiae_contig7279:2815..2906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7279 2816..2906 +
1691683830.9831228-CDS-L-elsbetiae_contig7279:2815..29061691683830.9831228-CDS-L-elsbetiae_contig7279:2815..2906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7279 2816..2906 +
1622816810.6796982-CDS-L-elsbetiae_contig7279:3443..34891622816810.6796982-CDS-L-elsbetiae_contig7279:3443..3489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7279 3444..3489 +
1691683830.9941375-CDS-L-elsbetiae_contig7279:3443..34891691683830.9941375-CDS-L-elsbetiae_contig7279:3443..3489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7279 3444..3489 +
1622816810.697893-CDS-L-elsbetiae_contig7279:4140..44921622816810.697893-CDS-L-elsbetiae_contig7279:4140..4492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7279 4141..4492 +
1691683831.0052679-CDS-L-elsbetiae_contig7279:4140..44921691683831.0052679-CDS-L-elsbetiae_contig7279:4140..4492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7279 4141..4492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7279.16143.1

>prot_L-elsbetiae_contig7279.16143.1 ID=prot_L-elsbetiae_contig7279.16143.1|Name=mRNA_L-elsbetiae_contig7279.16143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
MWNILAALSATRESTFDYWNARVFLPLSGGLMVLPTAIVVSVWVDVANST
MSRRKLCSTLRALDPSSAAIADNVFKVSRSMGISLYAMFGAEVLLLSSQT
RKSDPANLALTGMAGYSVAKCFLNRSIFKYLVQSAASKESKGIRSGVASS
PQRMSVQRMSVQRVGHSTTRTDAAKAAAGDTHEQNENKHEKNGWMAGAGA
TNSFSLSNRPRKIAIEN*
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mRNA from alignment at L-elsbetiae_contig7279:1418..4958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7279.16143.1 ID=mRNA_L-elsbetiae_contig7279.16143.1|Name=mRNA_L-elsbetiae_contig7279.16143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3541bp|location=Sequence derived from alignment at L-elsbetiae_contig7279:1418..4958+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGATGCAGGATCGACGACGATTCGTGTGGTTCTGGTGGCGGTGGCGGT
AGATATCATCAGCTTCATGTGGAATATACTGGCAGCACTCTCGGCAACCA
GAGAGTCCACCTTCGACTACTGGAATGCGAGAGTCTTCTTGCCACTTTCG
GGGGGACTGATGGTTCTGCCCACAGCGATCGTAGTATCGGTATGGGTGGA
CGTGGCGAACTCGACCATGTCCCGGCGGAAGGTGAGGAAGCTTGGTCAGG
CTTCGAAGAACCAATGACCACTTCATTAACCGAGCCGCTTTAGCATTGTT
CTTGACCGTGAGTGAATCCACGGCACGTAATCTTTTCTCGATCCTCATAC
ACGTGACCAGCCTGTTGTCCCGGTTGTCCAGTTGGTATCCTGGAAACCTT
CTAGCAGGCAGGTCACGAGTTTGATTCCCGGCGGGAGGGATTCTTTCTTG
CTGAGTGAGTTTTTTTCTCTCGCTTTCATCCCTGACAGACAGTGATTAAC
GCTTGCAGTAGCGTGTGTACACAAACTTCGACCTCACCGTCGACGAGGGA
AAGGGGTGGCTGAACCCTTCTCGCGATAAAAACGTTAGGCAAGCACCGCA
GAAGGTGGGCGTGGAGGCCTCAGGGGAGAGGAACCCTTCTGTGCGACCAC
GGGTCAGTGCTCTATAAGACTTCGACTGTGTTGACGAGGGTGGGGAGTGC
TGAACCCTGCTCGCGATAAAAACATATGTAACAGGCACCGCAGGAGGGGT
CCAACCCCCCCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCTATTTAGT
CGTAGTGGAGTATGGGGGCCAGTGGGGCAGACGGTGAATATGCCAATAAT
GGGAGGAAAAAACAAAAACATAAAACTCTGGCAAGATGCCCCTCGTGGCA
AGGAGCCCCTCGAGTGCTGGTTTAATGTGAAGATTAAAAAGAAACATAAA
CGTTGCTGTTTTCGTGTCAACGTATCGTCTCACAGTCAAAGGAAAAGCTG
GAACGCACGAAGAACGCGCTTCGAATCGGGACAGTTTTCTACATCACCCT
TCTATTTGTACTGTGTATATCTAACCACGAGAACTGGGCGGCGATTGTGC
AAATGACTGCGACCACCGTGGGCCTGAGTGCCTGTGGGTCTGGCGCGGCC
AAGGTAAACAACCACCCTATATTTCAGAAGAAAAATCGTTTTACAGAGTA
CACATATTTATGTAAAGTGCAAGTGCATTTTTTCTTCATAGCTTGCACCT
TGGGACAGCAGGAGGAGTTCGATATGGTGGCGAACGCCTCAACGCTTGAC
GAGCCCAACCCACCTGCTGCAGATGCTCTGTCGCTCTCTCACTGATAACT
GGAGGTCTAATTTCTGCCTTCCATCCGCCTTTCGTGCCTCCCTTACAGCT
GTGCTCAACCCTTCGGGCTCTTGACCCATCGAGCGCTGCCATCGCAGACA
ACGTGTTTAAGGTGTCTCGCTCGATGGGAATCTCTTTATGTGAGTTGCAT
CTGACCCAAAGTCAACGTAGTTTTTTCGTCGGCTTTGCATGACGCCATCT
CGCCCCCCACGAAATTATGCATTCAGTCGAAGATACTCTGTTTTTGTTTT
GCGTGTTTGTGGCTCCTGAAAGTATGAATGATACTCTCGCTACCTGCAGA
CTCAACAATTGTTCCACTCTTCTTATTGTGTAGTTCCGTTACGTGGTCGA
ACGCGTGAGAATGACGGCCGGGCACACCTCATTTTATGGCCGCACGAACG
TATAGCTATCCATGTATGTAGCAGATGTGTTCGAATCGATGTCTATGTTC
ATGTAAATACATATGTAGCTCTGGTATTACGGGACTATTCTTCCTCATCA
AGCCAAGCACACCACCATATGTGCGACATACTCTTCATATACATGGCGAA
CGCACGATTAGCGCGCCGACGGCCCAATACGACCTTGTATGACCACGGGT
GGAATTATGACGACAATCTCTGATCGCCGGAAGTGTGTGGATTTCCCCCT
TCACTACTCGCTGCTGCGTCAAGCAGACGCTATGTTCGGTGCTGAGGTCT
TGCTACTTTCAAGCCAAACAAGGTAATGTATGTGCATAGGAGTATTTCGC
ATGTTATCTTGTCGTGAGCTTGTAGGAATACACACGGCCGCAAACACCTT
GTTGTTGTGAAATTAAGAATAATAAACAACAAATACAACATTTTGTGATC
AATGAGGGTTATGAACGGCAAACAGGGAACAAGGCGTGAAGGAAAGTCGA
TTGCCTCCGGGGTATAATACATAGACTACATCGGTTTCGAACTGTACCTG
ACACATCGAAAATGAAGTGGTCGGCCGAATGGTTGTGACCCATCTCAAAC
AACCTGGGGAGTAAGAAGGTGTTTCATCAACTCTACTTTTATCTTAATCT
TGAGTCTCATAGAGCTTCTGTCTAAACACTCGTATGTACTAAAATAGACT
ACTTACTGCTGTTTTCTCCTGATATTGTAATGTATGCCTGCAGGATGTGA
GGCGACGGATAACGTTTTCGGTAGCATTTTCGTATATATAGATTGTTTTG
AACTTCAACCTTGCAGGCAACTGCTTATTATTTCCCAGTTCGGGGCGCAT
GTATCAAACGCATATGCCCCCGCCACCAAGGCATGTGCTTCCTGTGCTTC
AGAATATCTTGCACTCAGATCATAAATATTGCTTCTTCTGTCCCAACCTT
TCTTCGGACCCGCTGTTTCTCAGGAAGAGCGACCCGGCCAACCTTGCGCT
GACCGGGATGGCAGGGTATTCTGTGGCCAAATGTTTCCTAAACAGGTCGA
TCTTCAAGTATCTGGTCCAATCTGCAGCAAGCAAGGAAAGCAAGGGGATC
CGGTCTGGCGTGGCCAGCTCGCCTCAAAGGATGAGCGTCCAAAGGATGAG
CGTCCAAAGGGTCGGCCACTCCACCACGAGAACGGATGCAGCGAAAGCTG
CCGCGGGTGATACCCACGAGCAGAATGAAAACAAACACGAGAAGAATGGT
TGGATGGCTGGGGCAGGTGCCACCAACTCTTTTTCCTTGTCGAACCGCCC
TCGTAAGATTGCCATCGAGAACTAGCTGAATTTGGTGGTGAGATAAAGAG
CTTGAGTTAAAGTTACTAAATATTATTACAAGTTCTAGGTAGCCTACTGT
CGGCAGGCAAGTAAAGAGTTCTTATTTGTTTGCCCTTTTAGTACATATGT
TCTCCATGAAGGCGGGTCCTCCGCAAGCTTTCACACACATCTTGGCACTT
GCCTGGTGTTACTCGATGAGTGCAAATGGGTGGGTGTCTTGGCACCGGTT
TTACAATCTCTTGCACAATAGAGCAACTTTATCGATCGCCGAGGGCGCGA
TGAAGTTATACTTCGTATTAGATATATATAGACTATATGGTGTCAAACGG
TGTGTTTAACTTTATTAATTATTAAATAGAAGGCCTATTAGGGTGTGTGG
GTTACCCTAGGCTGCTTTCTTAGTTTTCGTTTTTGGATTATTAGTTGTTC
TTCTCGGTGGTAGCGTCTGCTTTCTGTGATGTGGGTCTCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7279:1418..4958+

>mRNA_L-elsbetiae_contig7279.16143.1 ID=mRNA_L-elsbetiae_contig7279.16143.1|Name=mRNA_L-elsbetiae_contig7279.16143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig7279:1418..4958+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGAATATACTGGCAGCACTCTCGGCAACCAGAGAGTCCACCTTCGA
CTACTGGAATGCGAGAGTCTTCTTGCCACTTTCGGGGGGACTGATGGTTC
TGCCCACAGCGATCGTAGTATCGGTATGGGTGGACGTGGCGAACTCGACC
ATGTCCCGGCGGAAGATGTGGAATATACTGGCAGCACTCTCGGCAACCAG
AGAGTCCACCTTCGACTACTGGAATGCGAGAGTCTTCTTGCCACTTTCGG
GGGGACTGATGGTTCTGCCCACAGCGATCGTAGTATCGGTATGGGTGGAC
GTGGCGAACTCGACCATGTCCCGGCGGAAGCTGTGCTCAACCCTTCGGGC
TCTTGACCCATCGAGCGCTGCCATCGCAGACAACGTGTTTAAGGTGTCTC
GCTCGATGGGAATCTCTTTATCTGTGCTCAACCCTTCGGGCTCTTGACCC
ATCGAGCGCTGCCATCGCAGACAACGTGTTTAAGGTGTCTCGCTCGATGG
GAATCTCTTTATACGCTATGTTCGGTGCTGAGGTCTTGCTACTTTCAAGC
CAAACAAGACGCTATGTTCGGTGCTGAGGTCTTGCTACTTTCAAGCCAAA
CAAGGAAGAGCGACCCGGCCAACCTTGCGCTGACCGGGATGGCAGGGTAT
TCTGTGGCCAAATGTTTCCTAAACAGGTCGATCTTCAAGTATCTGGTCCA
ATCTGCAGCAAGCAAGGAAAGCAAGGGGATCCGGTCTGGCGTGGCCAGCT
CGCCTCAAAGGATGAGCGTCCAAAGGATGAGCGTCCAAAGGGTCGGCCAC
TCCACCACGAGAACGGATGCAGCGAAAGCTGCCGCGGGTGATACCCACGA
GCAGAATGAAAACAAACACGAGAAGAATGGTTGGATGGCTGGGGCAGGTG
CCACCAACTCTTTTTCCTTGTCGAACCGCCCTCGTAAGATTGCCATCGAG
AACTAGGAAGAGCGACCCGGCCAACCTTGCGCTGACCGGGATGGCAGGGT
ATTCTGTGGCCAAATGTTTCCTAAACAGGTCGATCTTCAAGTATCTGGTC
CAATCTGCAGCAAGCAAGGAAAGCAAGGGGATCCGGTCTGGCGTGGCCAG
CTCGCCTCAAAGGATGAGCGTCCAAAGGATGAGCGTCCAAAGGGTCGGCC
ACTCCACCACGAGAACGGATGCAGCGAAAGCTGCCGCGGGTGATACCCAC
GAGCAGAATGAAAACAAACACGAGAAGAATGGTTGGATGGCTGGGGCAGG
TGCCACCAACTCTTTTTCCTTGTCGAACCGCCCTCGTAAGATTGCCATCG
AGAACTAG
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