mRNA_L-elsbetiae_contig7260.16129.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7260.16129.1
Unique NamemRNA_L-elsbetiae_contig7260.16129.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Match: D8LKW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKW4_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 3.780e-77
Identity = 129/144 (89.58%), Postives = 133/144 (92.36%), Query Frame = 3 
Query:    3 SIQRLNLLVNKKANHIKISKKEIARLLSDGKEEKARIKVEQVIREDFTIEAYDILELHCELVAERMRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVKSAELNEDGVVNPKVVEKLDSNPPSGFVVT 434
            SI RLNLLVNKKANHIKISKKEIARLL+DGKEEKARIKVEQVIREDFTIEAYD+LELHCELVAERMRLVASQKDVPPDMEQA+CTIIW ADRAEVS LSTVKSQF KKYG EYV+ AELNE G VNPKVVEKLD  PPS FVVT
Sbjct:   24 SITRLNLLVNKKANHIKISKKEIARLLADGKEEKARIKVEQVIREDFTIEAYDVLELHCELVAERMRLVASQKDVPPDMEQAVCTIIWAADRAEVSELSTVKSQFVKKYGSEYVRLAELNEGGCVNPKVVEKLDCQPPSSFVVT 167
[Close]
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Match: A0A7S1XZY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZY1_9STRA)

HSP 1 Score: 159 bits (403), Expect = 3.430e-44
Identity = 79/142 (55.63%), Postives = 106/142 (74.65%), Query Frame = 3 
Query:    6 IQRLNLLVNKKANHIKISKKEIARLLSDGKEEKARIKVEQVIREDFTIEAYDILELHCELVAERMRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVKSAELNEDGVVNPKVVEKLDSNPPSGFVV 431
            + RLN+ +NKK N +K  ++E+  LL + KEEKARI+VE VIREDFTIEAY+IL L CEL+ ER+RLV ++++ PPD+ +A+CT+IW  DRAE+S L  ++SQF KKYG E+VK A+ N    VN +VV KL  NPPS  +V
Sbjct:   73 VSRLNININKKTNQVKAKRREVGMLLREQKEEKARIRVEAVIREDFTIEAYEILALLCELLTERIRLVDAKEECPPDLMEAVCTLIWATDRAEISELEVIRSQFRKKYGAEFVKDAQDNIGSCVNDRVVVKLGVNPPSALLV 214
[Close]
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Match: A0A8J4SI40_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A8J4SI40_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.240e-43
Identity = 75/143 (52.45%), Postives = 103/143 (72.03%), Query Frame = 3 
Query:    3 SIQRLNLLVNKKANHIKISKKEIARLLSDGKEEKARIKVEQVIREDFTIEAYDILELHCELVAERMRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVKSAELNEDGVVNPKVVEKLDSNPPSGFVV 431
            ++ R+ ++ NKKAN     +KE+ARLL DGKEEKARI+VE +IR+DFT+E Y+ILEL CEL+AER  L+ ++ D P DM +A+CT+IW A R E+  L+ VK Q  KKYG ++  +A  N DG VN +V++KL   PPS F+V
Sbjct:   16 AVHRIGIVKNKKANAAVAQRKEVARLLGDGKEEKARIRVEGIIRDDFTMEGYEILELLCELLAERANLIKTESDCPYDMREAVCTLIWAASRTEIPELAEVKKQLTKKYGQDFEAAAIRNVDGCVNERVIQKLSVQPPSAFLV 158
[Close]
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Match: A0A1V9Z4K1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4K1_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.930e-43
Identity = 74/143 (51.75%), Postives = 107/143 (74.83%), Query Frame = 3 
Query:    3 SIQRLNLLVNKKANHIKISKKEIARLLSDGKEEKARIKVEQVIREDFTIEAYDILELHCELVAERMRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVKSAELNEDGVVNPKVVEKLDSNPPSGFVV 431
            ++ R+ ++ NKKAN  K+++KE+A+LL+DGKEEKARI+VE +IREDF +EAY+ILEL CEL+AER+ L+ +++  P DM +A+CT+IW A R E+  L  VKSQ  KKYG ++  +A  N DG VN +V+ KL   PP+ ++V
Sbjct:   16 AVGRIGIVKNKKANAAKVARKEVAKLLADGKEEKARIRVEGLIREDFIVEAYEILELLCELLAERVALIKAERSCPYDMREAVCTLIWAATRTEIPELGEVKSQLTKKYGQDFTAAALRNVDGCVNERVIHKLSVQPPNAYLV 158
[Close]
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Match: A0A1W0A923_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A923_9STRA)

HSP 1 Score: 154 bits (388), Expect = 7.230e-43
Identity = 72/143 (50.35%), Postives = 108/143 (75.52%), Query Frame = 3 
Query:    3 SIQRLNLLVNKKANHIKISKKEIARLLSDGKEEKARIKVEQVIREDFTIEAYDILELHCELVAERMRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVKSAELNEDGVVNPKVVEKLDSNPPSGFVV 431
            ++ R+ ++ NKKAN  K+ +KE+++LL++GKEEKARI+VE +IREDF +EAY+ILEL CEL+AER+ L+ S+++ P DM +A+CT+IW A R E+  L+ VK+Q  KKYG ++  +A  N DG VN +V+ KL   PP+ ++V
Sbjct:    2 AVGRIGIVKNKKANAAKVQRKEVSKLLAEGKEEKARIRVEGLIREDFIVEAYEILELLCELIAERVALIKSERECPYDMREAVCTLIWAATRTEIPELNEVKNQLTKKYGQDFTAAALRNVDGCVNERVIHKLSVQPPNAYLV 144
[Close]
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Match: A0A485LBW0_9STRA (Aste57867_19060 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBW0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 6.720e-42
Identity = 72/143 (50.35%), Postives = 104/143 (72.73%), Query Frame = 3 
Query:    3 SIQRLNLLVNKKANHIKISKKEIARLLSDGKEEKARIKVEQVIREDFTIEAYDILELHCELVAERMRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVKSAELNEDGVVNPKVVEKLDSNPPSGFVV 431
            ++ R+ ++ NKKA   K+ + E+A+LL DGKEEKARI+VE +IREDF +EAY+ILEL CEL+AER  L+ S+++ P DM +A+CT+IW A R E+  L+ VK+Q  KKYG ++  +A  N DG VN +V+ KL   PP+ ++V
Sbjct:    2 AVSRIGIVKNKKAIQSKVQRTEVAKLLKDGKEEKARIRVEGLIREDFVVEAYEILELLCELLAERSALIKSERECPYDMREAVCTLIWAASRTEIPELTEVKNQLTKKYGQDFTSAAMRNVDGCVNERVIHKLSVQPPNAYLV 144
[Close]
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Match: H3H3Z6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H3Z6_PHYRM)

HSP 1 Score: 153 bits (386), Expect = 7.950e-42
Identity = 74/143 (51.75%), Postives = 104/143 (72.73%), Query Frame = 3 
Query:    3 SIQRLNLLVNKKANHIKISKKEIARLLSDGKEEKARIKVEQVIREDFTIEAYDILELHCELVAERMRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVKSAELNEDGVVNPKVVEKLDSNPPSGFVV 431
            ++ R+ ++ NKKAN     ++E+ARLL+DGKEEKARI+VE +IR+DFT+E Y+ILEL CEL+AER  L+ ++ D P DM +A+CT+IW A R E+  L+ VK Q  KKYG ++  +A  N DG VN +V++KL   PPS F+V
Sbjct:   16 AVHRIGIVKNKKANAALAQRREVARLLADGKEEKARIRVEGIIRDDFTMEGYEILELLCELLAERANLIKTEADCPYDMREAVCTLIWAASRTEIPELAEVKKQLTKKYGQDFEAAAIRNVDGCVNERVIQKLSVQPPSAFLV 158
[Close]
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Match: A0A662WI25_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WI25_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.320e-41
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 3 
Query:    3 SIQRLNLLVNKKANHIKISKKEIARLLSDGKEEKARIKVEQVIREDFTIEAYDILELHCELVAERMRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVKSAELNEDGVVNPKVVEKLDSNPPSGFVV 431
            ++ R+ ++ NKKAN     ++E+ARLL DGKEEKARI+VE +IR+DFT+E Y+ILEL CEL+AER  LV S+ + P DM +A+CT+IW A R E+  L  VK Q  KKYG ++  +A  N DG VN +V++KL   PPS F+V
Sbjct:   16 AVHRIGIVKNKKANAAVAQRREVARLLGDGKEEKARIRVEGIIRDDFTMEGYEILELLCELIAERANLVKSESECPYDMREAVCTLIWAASRTEIPELVEVKKQLTKKYGQDFEAAAIRNVDGCVNERVIQKLSVQPPSAFLV 158
[Close]
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Match: W4FZ37_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=W4FZ37_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.360e-41
Identity = 73/143 (51.05%), Postives = 105/143 (73.43%), Query Frame = 3 
Query:    3 SIQRLNLLVNKKANHIKISKKEIARLLSDGKEEKARIKVEQVIREDFTIEAYDILELHCELVAERMRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVKSAELNEDGVVNPKVVEKLDSNPPSGFVV 431
            ++ R+ ++ NKKA   K  +KE+A+LL+DGKEEKARI+VE +IREDF IEAY+I+EL CEL++ER  L+ S+++ P DM +A+CT+IW A R E+  LS VK+Q  KKYG ++  +A  N DG VN +V+ KL   PP+ ++V
Sbjct:   16 AVHRIGIVKNKKAITSKAQRKEVAKLLADGKEEKARIRVEGLIREDFVIEAYEIIELLCELISERTPLIKSERECPYDMREAVCTLIWAATRTEIPELSEVKNQLTKKYGQDFTAAAMRNVDGCVNERVIHKLSVQPPNAYLV 158
[Close]
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Match: A0A067D044_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D044_SAPPC)

HSP 1 Score: 150 bits (380), Expect = 1.880e-41
Identity = 74/143 (51.75%), Postives = 106/143 (74.13%), Query Frame = 3 
Query:    3 SIQRLNLLVNKKANHIKISKKEIARLLSDGKEEKARIKVEQVIREDFTIEAYDILELHCELVAERMRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVKSAELNEDGVVNPKVVEKLDSNPPSGFVV 431
            ++ R+ ++ NKKAN  K+ +KE+A+LL++GKEEKARI+VE +IREDF +EAY+ILEL CELVAER  L+ +++  P DM +A+ T+IW A+R E+  L+ VKSQ  KKYG ++  +A  N DG VN +V+ KL   PP+ F+V
Sbjct:   16 AVGRIGIIKNKKANAAKVLRKEVAKLLAEGKEEKARIRVEGLIREDFVVEAYEILELLCELVAERAALIKAERACPYDMREAVYTLIWAANRTEIPELNEVKSQLTKKYGQDFAAAALRNVDGCVNERVIHKLSVQPPNSFLV 158
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7260.16129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW4_ECTSI3.780e-7789.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1XZY1_9STRA3.430e-4455.63Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8J4SI40_9STRA2.240e-4352.45Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A1V9Z4K1_9STRA3.930e-4351.75Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1W0A923_9STRA7.230e-4350.35Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A485LBW0_9STRA6.720e-4250.35Aste57867_19060 protein n=1 Tax=Aphanomyces stella... [more]
H3H3Z6_PHYRM7.950e-4251.75Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662WI25_9STRA1.320e-4152.45Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
W4FZ37_9STRA1.360e-4151.05Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A067D044_SAPPC1.880e-4151.75Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7260contigL-elsbetiae_contig7260:306..4090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog2880.D8LKW4
Preferred nameIST1
KEGG koko:K19476
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0007034,GO:0008150,GO:0012505,GO:0016192,GO:0016197,GO:0031410,GO:0031982,GO:0032509,GO:0032511,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0071985,GO:0097708
EggNOG free text desc.viral capsid secondary envelopment
EggNOG OGsKOG2027@1,KOG2027@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Ec32 ortholog descriptionDomain of unknown function DUF292, eukaryotic
Ec32 orthologEc-11_005810.1
Exons4
Model size628
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7260.16129.1prot_L-elsbetiae_contig7260.16129.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7260 467..2116 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816809.2997327-UTR-L-elsbetiae_contig7260:305..4661622816809.2997327-UTR-L-elsbetiae_contig7260:305..466Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7260 306..466 -
1691683829.9446402-UTR-L-elsbetiae_contig7260:305..4661691683829.9446402-UTR-L-elsbetiae_contig7260:305..466Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7260 306..466 -
1622816809.3374207-UTR-L-elsbetiae_contig7260:2116..21881622816809.3374207-UTR-L-elsbetiae_contig7260:2116..2188Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7260 2117..2188 -
1691683829.9828165-UTR-L-elsbetiae_contig7260:2116..21881691683829.9828165-UTR-L-elsbetiae_contig7260:2116..2188Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7260 2117..2188 -
1622816809.347764-UTR-L-elsbetiae_contig7260:3276..33531622816809.347764-UTR-L-elsbetiae_contig7260:3276..3353Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7260 3277..3353 -
1691683829.9942858-UTR-L-elsbetiae_contig7260:3276..33531691683829.9942858-UTR-L-elsbetiae_contig7260:3276..3353Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7260 3277..3353 -
1622816809.3588507-UTR-L-elsbetiae_contig7260:4042..40901622816809.3588507-UTR-L-elsbetiae_contig7260:4042..4090Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7260 4043..4090 -
1691683830.0065696-UTR-L-elsbetiae_contig7260:4042..40901691683830.0065696-UTR-L-elsbetiae_contig7260:4042..4090Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7260 4043..4090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816809.312199-CDS-L-elsbetiae_contig7260:466..6491622816809.312199-CDS-L-elsbetiae_contig7260:466..649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7260 467..649 -
1691683829.9617517-CDS-L-elsbetiae_contig7260:466..6491691683829.9617517-CDS-L-elsbetiae_contig7260:466..649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7260 467..649 -
1622816809.324446-CDS-L-elsbetiae_contig7260:2029..21161622816809.324446-CDS-L-elsbetiae_contig7260:2029..2116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7260 2030..2116 -
1691683829.9720123-CDS-L-elsbetiae_contig7260:2029..21161691683829.9720123-CDS-L-elsbetiae_contig7260:2029..2116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7260 2030..2116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7260.16129.1

>prot_L-elsbetiae_contig7260.16129.1 ID=prot_L-elsbetiae_contig7260.16129.1|Name=mRNA_L-elsbetiae_contig7260.16129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MRLVASQKDVPPDMEQAICTIIWVADRAEVSGLSTVKSQFAKKYGHEYVK
SAELNEDGVVNPKVVEKLDSNPPSGFVVTVRSFCPVYLQ*
back to top

mRNA from alignment at L-elsbetiae_contig7260:306..4090-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7260.16129.1 ID=mRNA_L-elsbetiae_contig7260.16129.1|Name=mRNA_L-elsbetiae_contig7260.16129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3785bp|location=Sequence derived from alignment at L-elsbetiae_contig7260:306..4090- (Laminarionema elsbetiae ELsaHSoW15)
TGAGCATCCAGAGGCTCAACTTGCTCGTAAACAAGAAGGCGAACCACAGT
GAGTGAAATGTGGGTTCATATGTACGCCCATCGCTGCCTGCAACGCACCA
CCCCCGTGGTGCCCAACCCGCGCGCGCACGAAGCGAGAATGCTGCGCAGC
GCTTTGGTTGACGCCTATATTTATTTGAGGGAAAATAATATTTCGGAGAT
TCGGTTTTGTCTTGGGTCGCCGAATTGATTCTTATTCTCACGCCTTGCGC
TCACTGCTCTCCGTCAGTGCTTCTTCGTATGTGTTTTATGTTACGTCCAT
GTTTACGTGTGTGGCTTTTCGAATTGTCGAACGGACGGCAAACGAATAAC
AATAACAGTTTTGTAAAAAATGATGAGGCGCTTCCGATCCTGCTCCTCAT
TAATAGTACTTCTACATAACTATATCATGTGAGAGACAACAAACTAGACA
ACAACAGCCCGAAGCCTTGCAGCGTCTCTCGTCCGCACGGCAAAGGGGCC
GCGTGTTGCACGGCTTGTACTGACTACTACTGTGTGGCGGCTCATACTGA
CTGACTGCCTGTTGTGGCGCCCACATCACGCGTCCTTTTCGGACTGCTAC
TTTTTTCTTCTTCTTCATACTTTACGTACGTATCCACCACTATACATATG
TATACAATGCCTCCCTGTGCTATTGTACTTCTGTTGCTGCTGTGACAACA
CGACTCCAACATTTGTTTTTCCCACCGGAGTAAATAGTCAAGATAAGCAA
GAAGGAGATCGCTCGGCTGCTCAGCGATGGAAAGGAGGAAAAGGCCAGAA
TCAAAGTGGAACAGGTGAGTGAGTGCGTGCCTGCGTGCACCCGCGTGGTC
CTACATCCACATGTAGGCTTGAACTCAGTATGCTTTTTTTGCGAAATTGC
GGGGGAACAAAAGTCCTTATTACACTGGTCTTGAGTGTTGTAGAGAAAAA
GAAGGTGTAGTAGGTAAAAAGCGAAAAAGAAAAAAACGCCTACATACATG
CCGAGTTTTCAGGCCTAGTCCTGCAGCAGTATTGTTTGCATGCGTGGCTT
GCTGCTGCGGCGGAGGCCTTGTCCGTCGAGGGCGGGCGGTGGTGCCCCAG
AAAAGCGTTTTTCAGGGGTAGGGATGCATGTGTACGTCGCGATTGCTCGG
CTCGACCGGTAACGTACGTGGTGGTTTTTGTGTGTGCGCCGTAACTGTGC
GGGGCTATGTATATCGCGCACCCCCCTCTGGGTCGCGACTTTTAGAGCTC
GATTACTCGGTCGCGAAGAGGGCGCCAACACCAAACGACACGTTTTCGAA
CAGCGAAATAGGGATATTGACATATCGAGACGCGATTTTTCCAACGCCAC
CCTTCTCGGCACTTGGCACTCTTCTTGCTGTGGAGTAATCGAGCTCTGAG
AATCAGCCCAGGGGATGTTGCGATAATTAGCCCGCACAAACGCGGTAGGC
CTCTGAAGCGGGGTTGTTTTGTTCGGCTGCTGCTGCTGCCGGTCGAGCCC
AACAGCCTTAAGTGTGCACACAGCTGAACCGACAGCGCTATATGTAACAC
AAGAAGTGTGTAGGTTCAGGAGAAGAACACGAGGGAATAGAACGTTTCGT
TCACGGGGGACACAATGGTTGCCCTTTTAATATTTACATACATATGCGTT
GCGTGCCTTGTTTTTTGCGGCGTGCTTGCTTATCCGGGACTGTCAGCAAG
CGGGTTCCGCCCCGAATCAAACCCCAGGGTGCGTGTTCCTGTTCTGTTCT
CAAGTGGGCAGTTCTCCCTTAGAACAACCGCAACATTTTTCTTCGCGGCG
TGTGTTCCACAAGTGTTGGAAGCGTGACCTACGCGCGGGCAACGCACTTT
TTAGTTTTACGTTATGTATTGTGTGCGTCGACGTGTTCTGTCGCGAAAAA
AGGTGATTCGCGAGGATTTCACGATCGAGGCGTACGACATCTTGGAGCTC
CACTGCGAGCTGGTCGCCGAGCGCATGCGCCTGGTGGCCTCTCAGAAGGA
CGTGCCGCCGGACATGGAGCAGGCTATCTGCACGATCATTTGGGTGGCCG
ACAGAGCAGAGGTGCACGCACGGTCGGTTAGCTTTTGCCGCTGCGCTGCG
TTCGTTGTTTGTGATATGTATCTAGTGTGGTGGCGATCTGATGTACGTGC
AGGCTTCCTGCAACATGCAGAGCCCCCAATTCTCAAAAAGAGCTGTGGGT
GGGGGCAGCGGGGGGGGGGTATTTATCTAGGAAATAGAGTGAAACATCCC
CCACGGGGCCACTTTTGCCGAATTGGGGGCCCTGCTGCAGGAAGCCTACA
CAAACATACTGTCTGTAGAGCCCCCAATTCTCAAAAAGAGCTGTTGGGGG
CAGCGCGCGGGGCGGTATTTATCTAGGAAATAGAGTGAAACACCCCCCAC
GGGGCCACTTTTGCCGAATTGGGGGCCCTGGTGCAGGAAAAGCTTATAGA
TGTAGGAACGGTAATGCTGCAGGAAACGAGTACCGAGATGAGCAAGCTGG
AGTACCGTTTATACTCTGTGGGTCGGTGGTTGTGGGATTTATTGCCTTCC
TGTTTGTTAAAAATAAACAATGAATCAAAGATGGAACCTATACCCCACAC
TAGAGCAAGGACTCGATATGGGGTTCAAACGGTACTCCATACAATAACGT
CATATTTGGCGGAAGCGAGCAGAAAAACGACCCGAAATATCAGAAGGGTT
CAACATCTCTCCTGCAAAGATTCAAAGATTTGCGAGGTCGGCCAACAAGT
AATCAGGCGGGTAGTTGCCCGCCGTGATGCCGTAATGTTGTCATCTAGTT
ATTTGCGGTAAAACACACACACACACACGCACGCACACACACACAGACTT
TTTCGTGCGGTTTTTACTGAAGACCCTTGGTGTTATTGTTGCTTTTGCTG
TTGTCGCCACTCCGCATACCGCTTGACAAAAGCACAGGGTGGAGCCAATC
GCCACCGACCGTAGATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TGTGTGTCTCCTGTGTTCCACATATTGAATTTGATACACCATACATACAG
CAGGCACCGATCGATCGAGCATTGTTTTTGTTATATTTCGCCGGTCCGAT
CTGGTCGCCAGTAAATACGCAGAGACTTGGCCGGGTGTGTAAGAGCGTTT
TGAAAAACGGCAATTTTCCTCACCGGAAGAGTTTTTTGTGGGAAACCCCG
GGGGGCGCCGGAGGGGGGAGACGATAAGACTCACCCCTTTGCGTGTGTGC
CTACACAGGCCAGGCGTTCCTTCTTGTTTGTACGTACATACCTACCCAAG
CGTTTTCCCGGCACGCATTTCAACATCCAACAACCCATGTGGAGCGCAAT
TTTAACCACTGCTGCTGCTGCTGCTGCTGCTGCTGTTATCGCTGTTTCGT
TTACGCGTCTCGTGCGTGCGGGGGCGGGGGGGGGGGGGCAGGTGTCGGGG
CTGTCGACGGTCAAGTCCCAATTCGCCAAGAAGTACGGTCACGAGTACGT
GAAGTCGGCCGAGCTGAACGAGGACGGGGTCGTCAACCCGAAGGTGGTGG
AGAAGCTGGACTCCAATCCTCCTTCGGGCTTCGTCGTCACGGTGAGGAGC
TTCTGTCCTGTCTACCTGCAGTAGGCGACGCAAGCCCGGCTGGGTCGTCT
AGCTATGTAGGCTAGTCGTAGTGGGGTATATGGGCCAGTGGGGCAGACGA
CGAATATGCCAATAATGGGAGGGAACAACACAAATATATATAAGTCTATT
AAGAATTGAATTTTTCTTGAGAGGCGTCCATTTCA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7260:306..4090-

>mRNA_L-elsbetiae_contig7260.16129.1 ID=mRNA_L-elsbetiae_contig7260.16129.1|Name=mRNA_L-elsbetiae_contig7260.16129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig7260:306..4090- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCTGGTGGCCTCTCAGAAGGACGTGCCGCCGGACATGGAGCAGGC
TATCTGCACGATCATTTGGGTGGCCGACAGAGCAGAGATGCGCCTGGTGG
CCTCTCAGAAGGACGTGCCGCCGGACATGGAGCAGGCTATCTGCACGATC
ATTTGGGTGGCCGACAGAGCAGAGGTGTCGGGGCTGTCGACGGTCAAGTC
CCAATTCGCCAAGAAGTACGGTCACGAGTACGTGAAGTCGGCCGAGCTGA
ACGAGGACGGGGTCGTCAACCCGAAGGTGGTGGAGAAGCTGGACTCCAAT
CCTCCTTCGGGCTTCGTCGTCACGGTGAGGAGCTTCTGTCCTGTCTACCT
GCAGTAGGTGTCGGGGCTGTCGACGGTCAAGTCCCAATTCGCCAAGAAGT
ACGGTCACGAGTACGTGAAGTCGGCCGAGCTGAACGAGGACGGGGTCGTC
AACCCGAAGGTGGTGGAGAAGCTGGACTCCAATCCTCCTTCGGGCTTCGT
CGTCACGGTGAGGAGCTTCTGTCCTGTCTACCTGCAGTAG
back to top