mRNA_L-elsbetiae_contig7255.16120.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7255.16120.1
Unique NamemRNA_L-elsbetiae_contig7255.16120.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7255.16120.1 vs. uniprot
Match: D7G4L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L8_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 3.950e-78
Identity = 158/299 (52.84%), Postives = 183/299 (61.20%), Query Frame = 1 
Query:    1 SLARLGMFRSANDAKSRFIHKHIRAATALAQ--ASPE-GHEVGMGVPLPRHWGGPPGIPMAKFSQPLAVMATEAALEDLKRNQRGERKRDQSSXXXXXXXXXXXXXQQRSGAST--STASRRARLLEQSQSDGQIRLDNAKHCHDHNSQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---AVILPQGGGLILVGEDTVRLSKFPRGCERVPGAEGASGKRMQAISEQSNAGDGCGEDVLTRLCNPKHFTGTAATGHLPSVVDLEGGVGVLLKGASSEVKDHIGAQEVSWRLRLAERL 873
            SLARLG+F+SANDAKSRFIHKHIRAATAL+   +SPE G  +GM  PLPRHWGGPP  P AK + P+AVMATEAALED ++ +R ER RD  S               +S  S     ++R ARL      D  +      HC   + +H                                AVILP+GGGL+L+GED VR SKFPRGCE +  A  AS      + E  ++G+   +DVL RLCNPKHFTGTAATGHLP VVDLEGGVGVLLKGAS  VKDHIG QEVSWRLRLAERL
Sbjct:    9 SLARLGLFKSANDAKSRFIHKHIRAATALSHTSSSPEVGEGMGMPEPLPRHWGGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAERIRDHRSLGSRSKSQGPGPEGVKSLTSVVPKASARGARLQRGRSEDSFVVGKKTNHCEHPSPRHPHQHLRHHPHPCQRGGHNSDQRQPKHRPPSTHAVILPKGGGLVLIGEDGVRKSKFPRGCE-LSAAAMASVATTPPL-ESKSSGESEDDDVLARLCNPKHFTGTAATGHLPVVVDLEGGVGVLLKGASIAVKDHIGKQEVSWRLRLAERL 305
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BLAST of mRNA_L-elsbetiae_contig7255.16120.1 vs. uniprot
Match: A0A6H5KLC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC7_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 3.160e-64
Identity = 153/298 (51.34%), Postives = 173/298 (58.05%), Query Frame = 1 
Query:    1 SLARLGMFRSANDAKSRFIHKHIRAAT-ALAQASPE-GHEVGMGVPLPRHWGGPPGIPMAKFSQPLAVMATEAALEDLKRNQRGERKRDQSSXXXXXXXXXXXXXQQRSGAST-STASRRARLLEQSQSDGQIRLDNAKHCHDHNS----QHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVILPQGGGLILVGEDTVRLSKFPRGCERVPGAEGASGKRMQAISEQSNAGDGCGEDVLTRLCNPKHFTGTAATGHLPSVVDLEGGVGVLLKGASSEVKDHIGAQEVSWRLRLAERL 873
            SLARLG+F+SANDAKSRFI+KHIRAAT A   +SPE G  +G   PLPRH  GPP  P AK + P+AVMATEAALED ++ +R E  RD                  +S AS    AS R   L + +SD    +    +  +H S          XXXXXXX                  AVILP+GGGL+L+GED VR SKFPRGCE  P +                       DVL RLCNPKHFTGTAATG LP VVDLE GVGVLLKGAS  VKDHIG QEVSWRLRLAERL
Sbjct:   37 SLARLGLFKSANDAKSRFINKHIRAATLAHTSSSPEVGEGMGRQEPLPRHCSGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAEIIRDHRGPGSKSEPQGPGPEGLKSLASAVPKASARGASLRRGRSDDGFVVSKKTNQREHPSPRHPHQYLRHXXXXXXXGEHNSDQPQPKQRSPSTHAVILPKGGGLVLIGEDGVRKSKFPRGCE--PSSATXXXXXXXXXXXXXXXXXXXXXDVLARLCNPKHFTGTAATGRLPVVVDLERGVGVLLKGASIAVKDHIGKQEVSWRLRLAERL 332
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7255.16120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4L8_ECTSI3.950e-7852.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLC7_9PHAE3.160e-6451.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7255contigL-elsbetiae_contig7255:3194..5467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_000110.1
Exons4
Model size876
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7255.16120.1prot_L-elsbetiae_contig7255.16120.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7255 3212..5467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.544847-UTR-L-elsbetiae_contig7255:3193..32111622816808.544847-UTR-L-elsbetiae_contig7255:3193..3211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7255 3194..3211 +
1691683829.3124511-UTR-L-elsbetiae_contig7255:3193..32111691683829.3124511-UTR-L-elsbetiae_contig7255:3193..3211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7255 3194..3211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.5552423-CDS-L-elsbetiae_contig7255:3211..32561622816808.5552423-CDS-L-elsbetiae_contig7255:3211..3256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 3212..3256 +
1691683829.3235435-CDS-L-elsbetiae_contig7255:3211..32561691683829.3235435-CDS-L-elsbetiae_contig7255:3211..3256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 3212..3256 +
1622816808.568334-CDS-L-elsbetiae_contig7255:3693..38821622816808.568334-CDS-L-elsbetiae_contig7255:3693..3882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 3694..3882 +
1691683829.3345556-CDS-L-elsbetiae_contig7255:3693..38821691683829.3345556-CDS-L-elsbetiae_contig7255:3693..3882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 3694..3882 +
1622816808.579733-CDS-L-elsbetiae_contig7255:4387..49211622816808.579733-CDS-L-elsbetiae_contig7255:4387..4921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 4388..4921 +
1691683829.3458552-CDS-L-elsbetiae_contig7255:4387..49211691683829.3458552-CDS-L-elsbetiae_contig7255:4387..4921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 4388..4921 +
1622816808.5909355-CDS-L-elsbetiae_contig7255:5377..54671622816808.5909355-CDS-L-elsbetiae_contig7255:5377..5467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 5378..5467 +
1691683829.3545158-CDS-L-elsbetiae_contig7255:5377..54671691683829.3545158-CDS-L-elsbetiae_contig7255:5377..5467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 5378..5467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7255.16120.1

>prot_L-elsbetiae_contig7255.16120.1 ID=prot_L-elsbetiae_contig7255.16120.1|Name=mRNA_L-elsbetiae_contig7255.16120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=286bp
MFRSANDAKSRFIHKHIRAATALAQASPEGHEVGMGVPLPRHWGGPPGIP
MAKFSQPLAVMATEAALEDLKRNQRGERKRDQSSRGRRKIDNSARQRQQR
SGASTSTASRRARLLEQSQSDGQIRLDNAKHCHDHNSQHHHHINSDRRHP
RKHCQQQQQQQNRPPSTHAVILPQGGGLILVGEDTVRLSKFPRGCERVPG
AEGASGKRMQAISEQSNAGDGCGEDVLTRLCNPKHFTGTAATGHLPSVVD
LEGGVGVLLKGASSEVKDHIGAQEVSWRLRLAERL*
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mRNA from alignment at L-elsbetiae_contig7255:3194..5467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7255.16120.1 ID=mRNA_L-elsbetiae_contig7255.16120.1|Name=mRNA_L-elsbetiae_contig7255.16120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2274bp|location=Sequence derived from alignment at L-elsbetiae_contig7255:3194..5467+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCTCGCGAGGTTGGGGATGTTCCGGTCGGCCAATGACGCCAAGTCAAG
GTTCATCCACAAGGTGCGCGCCGTGTACAACCACAGACCAGGTTTCCTGC
AGTGTGTGAGGCTTAAATCGGGCATCGACTACATAGGGCTCATGTGGTAG
GGCTCGGGTTCTTTGCCATAGGTTTCACCAAACTCTGAGGCGTGGCCTCC
TTGTATCCTACTTTCGCATGCAAAGTCTGATGCAAAGCCGTGCGCATTTT
TTGTTTCCTTTTAGAAGCATGTCGGGCTTTCCAGAAGGAAATAAAACCCC
TTGTTGCACACCCCATTTACGACGCTAGACGAGTTCCTGCGCAACGATAG
AGCTTGCTTCAGCAAGGGCTACTTTAGTTGCGTATCGGATACTCCTGTAC
GCCCAAGACAGGGACACTGCCGCGCGAGTCATCCTTAATATTTTCATTCC
GCTCCGTTGCCGGATTATACTGCTCAAACATGTACGGAATGCATAAATAG
CACATAAGAGCGGCGACGGCCCTCGCACAAGCATCCCCGGAAGGGCATGA
GGTAGGGATGGGGGTGCCGCTCCCTCGACATTGGGGGGGTCCGCCCGGAA
TTCCGATGGCAAAATTTTCTCAACCACTGGCCGTTATGGCAACGGAAGCA
GCGCTAGAGGATTTGAAGCGGAATCAAAGAGGAGAACGGGTGAGGAACAT
TTTTTTTTCTAAATACCGCGTGACTGTTGTCGTTCAAACGTTTTTTCAGC
AAATACAATAGATACTCGCGTCATTCGCTTTCTGAGTGTTGTTGTGATAC
TTCGAACTGTACCCAAGAATGGTGTTCGCAGTCGTCATTCGAGCCGGGAG
TTGGGAAGAATAGACGGGGAGACTACGGCAGTTGGCCCATCGCTCTGCGC
GGAAATTTTGTCACCAGAAACGTTCATGTTGCTTTCAAGCAAAACTCTGT
GATACTCGTCGAATACGCTGTTTTTGTGGCATACGATGTTTCAACCGCTG
TCTTCTACGAAGCGAGACGTCTCAAAATATTTCTTCTGCGTTCGAGCACG
CGTTGCTTCTGTCAACGGAGCTACCGCACGTTCCACCCAGAGGTATCCCG
AAGCACAAAAGGTACACCTTGGCAGCGACCAAGTAGAGGCGATTTCATTG
ACTAACACAGTATTTTCATGAATGTGCTTGCCACGCCTCGGCAGAAACGA
GACCAAAGTAGTCGAGGGAGGAGGAAGATTGACAACTCCGCTCGACAGCG
ACAGCAGCGGTCAGGGGCTTCAACGTCTACTGCGTCAAGAAGAGCAAGAC
TGCTGGAGCAGAGCCAGTCCGATGGTCAGATTCGGCTCGACAATGCGAAA
CATTGTCACGACCACAACAGCCAACATCACCACCATATCAACAGTGACCG
TCGCCATCCACGCAAGCACTGTCAGCAGCAGCAGCAGCAGCAAAACCGCC
CGCCATCGACACACGCGGTGATTCTGCCGCAAGGGGGGGGCTTAATCTTA
GTAGGAGAAGATACTGTTCGCTTAAGCAAGTTCCCGAGAGGGTGCGAGCG
AGTCCCTGGAGCAGAAGGTGCATCAGGGAAACGGATGCAAGCCATCTCGG
AGCAGAGTAACGCGGGAGACGGATGCGGGGAAGACGTTTTAACGAGACTG
TGCAACCCCAAGCACTTTACCGGAACTGCTGCCACTGGGCATCTTCCGAG
CGTCGTCGATCTGGAGGGAGGGGTCGGGGTGAGCTGCACGGGCCCATTCT
TCTCTGCCGCGCAAATCTATTGTCCCTTCTCCCCCACTCCGCCGTCCTGC
ACTTTCCACGCTTCAAGAGTACAGGGAAGTAGGACATCTGTTATGGCGAT
AAGTGTTTTTCCTGAGGTTTCTACATCAGCAGTGGTTTGAATTCGGGTCT
ACGAGCCATCATGCCTTCCTACCGACTTTCGTTGTCAAAGTATTCCGAGC
TGGATATGATGTACTTGGTGGCCCCCCCGCCTAAACACGATATCGTTGCA
GTTTGCGATGAATCACGAAGAGCAAGATATTAAGTCTAGGGCGGAGGGGC
GCGGCAAACTGAAGCTTGATTGATGAAAATGATTGACAATATAAGGGACT
TGCTCGGAGGCCGCTTTCGTTTCAAACTCGTTATGTGCTGTACCCGGTAC
ACTTTGCATTATGTTCGCGTATGCGCGTGATCAGGTGTTGCTGAAAGGTG
CTTCGAGCGAGGTCAAGGACCATATAGGTGCACAGGAAGTCAGCTGGAGG
CTGCGGCTCGCTGAACGACTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7255:3194..5467+

>mRNA_L-elsbetiae_contig7255.16120.1 ID=mRNA_L-elsbetiae_contig7255.16120.1|Name=mRNA_L-elsbetiae_contig7255.16120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1716bp|location=Sequence derived from alignment at L-elsbetiae_contig7255:3194..5467+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCCGGTCGGCCAATGACGCCAAGTCAAGGTTCATCCACAAGATGTT
CCGGTCGGCCAATGACGCCAAGTCAAGGTTCATCCACAAGCACATAAGAG
CGGCGACGGCCCTCGCACAAGCATCCCCGGAAGGGCATGAGGTAGGGATG
GGGGTGCCGCTCCCTCGACATTGGGGGGGTCCGCCCGGAATTCCGATGGC
AAAATTTTCTCAACCACTGGCCGTTATGGCAACGGAAGCAGCGCTAGAGG
ATTTGAAGCGGAATCAAAGAGGAGAACGGCACATAAGAGCGGCGACGGCC
CTCGCACAAGCATCCCCGGAAGGGCATGAGGTAGGGATGGGGGTGCCGCT
CCCTCGACATTGGGGGGGTCCGCCCGGAATTCCGATGGCAAAATTTTCTC
AACCACTGGCCGTTATGGCAACGGAAGCAGCGCTAGAGGATTTGAAGCGG
AATCAAAGAGGAGAACGGAAACGAGACCAAAGTAGTCGAGGGAGGAGGAA
GATTGACAACTCCGCTCGACAGCGACAGCAGCGGTCAGGGGCTTCAACGT
CTACTGCGTCAAGAAGAGCAAGACTGCTGGAGCAGAGCCAGTCCGATGGT
CAGATTCGGCTCGACAATGCGAAACATTGTCACGACCACAACAGCCAACA
TCACCACCATATCAACAGTGACCGTCGCCATCCACGCAAGCACTGTCAGC
AGCAGCAGCAGCAGCAAAACCGCCCGCCATCGACACACGCGGTGATTCTG
CCGCAAGGGGGGGGCTTAATCTTAGTAGGAGAAGATACTGTTCGCTTAAG
CAAGTTCCCGAGAGGGTGCGAGCGAGTCCCTGGAGCAGAAGGTGCATCAG
GGAAACGGATGCAAGCCATCTCGGAGCAGAGTAACGCGGGAGACGGATGC
GGGGAAGACGTTTTAACGAGACTGTGCAACCCCAAGCACTTTACCGGAAC
TGCTGCCACTGGGCATCTTCCGAGCGTCGTCGATCTGGAGGGAGGGGTCG
GGAAACGAGACCAAAGTAGTCGAGGGAGGAGGAAGATTGACAACTCCGCT
CGACAGCGACAGCAGCGGTCAGGGGCTTCAACGTCTACTGCGTCAAGAAG
AGCAAGACTGCTGGAGCAGAGCCAGTCCGATGGTCAGATTCGGCTCGACA
ATGCGAAACATTGTCACGACCACAACAGCCAACATCACCACCATATCAAC
AGTGACCGTCGCCATCCACGCAAGCACTGTCAGCAGCAGCAGCAGCAGCA
AAACCGCCCGCCATCGACACACGCGGTGATTCTGCCGCAAGGGGGGGGCT
TAATCTTAGTAGGAGAAGATACTGTTCGCTTAAGCAAGTTCCCGAGAGGG
TGCGAGCGAGTCCCTGGAGCAGAAGGTGCATCAGGGAAACGGATGCAAGC
CATCTCGGAGCAGAGTAACGCGGGAGACGGATGCGGGGAAGACGTTTTAA
CGAGACTGTGCAACCCCAAGCACTTTACCGGAACTGCTGCCACTGGGCAT
CTTCCGAGCGTCGTCGATCTGGAGGGAGGGGTCGGGGTGTTGCTGAAAGG
TGCTTCGAGCGAGGTCAAGGACCATATAGGTGCACAGGAAGTCAGCTGGA
GGCTGCGGCTCGCTGAACGACTGTGAGTGTTGCTGAAAGGTGCTTCGAGC
GAGGTCAAGGACCATATAGGTGCACAGGAAGTCAGCTGGAGGCTGCGGCT
CGCTGAACGACTGTGA
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