mRNA_L-elsbetiae_contig7248.16111.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7248.16111.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI) HSP 1 Score: 348 bits (894), Expect = 3.090e-107 Identity = 332/477 (69.60%), Postives = 353/477 (74.00%), Query Frame = 1 Query: 1 GESGGGVAGAXXXXXAELPARWAAGETGKVVARFSNPLQVPLEVESITAVVDGAKVQAFPTSVLLPPRAEFHEVLLFVKPLEDGQVILRGVTVEVLSLVTMCKVDKWGRGISLGPRAPPPRTYKSLRATFRKPQQVLTTDTVDIAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGGILVEVIGSGGGSVGLASSEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDGAARDGDGKPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFSPDPRMRKGETACRKLRVEGAAPIVRLFRASPPTSEALAGEEIEEVAQFLGGGLSFGGDADADATECLLLLELANDSSFPVFSWRSHSRCRKGLRRQRQRAXXXXXXXXXXXXEGGRELEPTGEGGAE--AGFVEGGVVEIPGGSRRCLPLRIPRLRVRPEGK 1425 G+ GGG +G AELPARWAAGETG+VVARFSNPLQVPLEVESITAVVDGA+VQAFPTSVLLPPRAEFHE DGQV+LRGV+VEVLSLVTMC+VDK+GRG+S GPRAPPPRTYKSLRATFR+P+Q LTTDTVDIAA XXXXXXXXXXXXXXX GG VEVIG G G SS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEF+PDPRMRKGETACRKLRVE AAP+VRL RASPPTSE LAGEEI EVAQFLGGGLSF D DAD+TECLL+LELANDS+FPVF WRSH ++ R R R+L GG E G G VVEIP GSRRCL LR+PRLRVRPEG+ Sbjct: 222 GQGGGGDSGGRPG--AELPARWAAGETGRVVARFSNPLQVPLEVESITAVVDGARVQAFPTSVLLPPRAEFHE---------DGQVVLRGVSVEVLSLVTMCRVDKFGRGVSPGPRAPPPRTYKSLRATFRQPKQALTTDTVDIAAXXXXXXXXXXXXXXXXXXEEEGGSPVDSEGNPAEGTGVGF------GGGDVEVIGGGTG----VSSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFTPDPRMRKGETACRKLRVESAAPVVRLSRASPPTSEVLAGEEIVEVAQFLGGGLSF--DGDADSTECLLVLELANDSAFPVFPWRSHRAKQQQQGRHR------------------RQLTAGTIGGPEDGGGLGRGQVVEIPRGSRRCLSLRVPRLRVRPEGR 657
BLAST of mRNA_L-elsbetiae_contig7248.16111.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE) HSP 1 Score: 303 bits (776), Expect = 1.530e-87 Identity = 331/630 (52.54%), Postives = 355/630 (56.35%), Query Frame = 1 Query: 46 AELPARWAAGETGKVVARFSNPLQVPLEVESITAVVDGAKVQAFPTSVLLPPRAEFHEVLLFVKPLEDGQVILRGVTVEVLSLVTMCKVDKWGRGISLGPRAPPPRTYKSLRATFRKPQQVLTTDTVDIAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGGILVEV---------IGSGGGSVGLASSEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDGAARDGDGKPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFSPDPRMRKGETACRKLRVEGAAPIVRLFRASPPTSEALAGEEIEEV---------------------------------------------------------------------------------------------------------------------------------------------------------------AQFLGGGLSFGGDADADATECLLLLELANDSSFPVFSWRSHSRCRKGLRRQRQRAXXXXXXXXXXXXEGGRELEPTGEGGAE--AGFVEGGVVEIPGGSRRCLPLRIPRLRVRPEGK 1425 AELPARWAAGETG+VV RFSNPLQVPLEVESITAVVDGA+VQAFPTSVLLPPRAEFHEV+LF+KPLEDGQV+LRGV+VEVLSLVTMC+VDK+GRG+S GPRAPPPRTYKSLRATFR+P+Q LTTDTVDIAA XXXXXXXXXXXXXXX +EGG V+ +G GGG V + G XXXXXXXXXXXXXXXXXXXXXXXXXXXX R+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEF PDPRM KGETACRKLRVE AAP+VRL RASPPTSE LAGEEIEEV AQFLGGGL F D DAD+TECLL+LELANDS+FPVF WRSH +K R R R+L GG E G G VVEIPGGSRRCL LR+PRLRVRPEG+ Sbjct: 829 AELPARWAAGETGRVVTRFSNPLQVPLEVESITAVVDGARVQAFPTSVLLPPRAEFHEVVLFIKPLEDGQVVLRGVSVEVLSLVTMCRVDKFGRGVSPGPRAPPPRTYKSLRATFRQPKQALTTDTVDIAAXXXXXXXXXXXXXXXXXXE-------------------------EEGGSPVDSEGNPAEGTGVGFGGGDVEVIGGGTGVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ASPHGREG------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFVPDPRMWKGETACRKLRVESAAPVVRLSRASPPTSEVLAGEEIEEVLELVNQGGPSVGVMEVWTRPCRSTKKPLASAMSLLFSLADSAXXXXXXXXXXXXXXXEFGGEGGSGSAMSSLGLDVGLAXXXXXXXXXXXXXXXXXVVVPGGAVRLALKLRAGQAANRDVVTEVLVKYSEKEGAPFHRQLRLPLRLTIRGGLRVCSLRVAQFLGGGLRF--DVDADSTECLLVLELANDSAFPVFPWRSHRAKQKQQGRHR------------------RQLTAGTIGGPEDGGGLGRGQVVEIPGGSRRCLSLRVPRLRVRPEGR 1406 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7248.16111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7248.16111.1 >prot_L-elsbetiae_contig7248.16111.1 ID=prot_L-elsbetiae_contig7248.16111.1|Name=mRNA_L-elsbetiae_contig7248.16111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=475bp GESGGGVAGAGAGAGAELPARWAAGETGKVVARFSNPLQVPLEVESITAVback to top mRNA from alignment at L-elsbetiae_contig7248:416..9246+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7248.16111.1 ID=mRNA_L-elsbetiae_contig7248.16111.1|Name=mRNA_L-elsbetiae_contig7248.16111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8831bp|location=Sequence derived from alignment at L-elsbetiae_contig7248:416..9246+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7248:416..9246+ >mRNA_L-elsbetiae_contig7248.16111.1 ID=mRNA_L-elsbetiae_contig7248.16111.1|Name=mRNA_L-elsbetiae_contig7248.16111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2850bp|location=Sequence derived from alignment at L-elsbetiae_contig7248:416..9246+ (Laminarionema elsbetiae ELsaHSoW15)back to top |