mRNA_L-elsbetiae_contig724.16104.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig724.16104.1
Unique NamemRNA_L-elsbetiae_contig724.16104.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig724.16104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig724contigL-elsbetiae_contig724:7755..8373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size620
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.5962062-CDS-L-elsbetiae_contig724:7754..80811622816806.5962062-CDS-L-elsbetiae_contig724:7754..8081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig724 7755..8081 +
1691683827.7163472-CDS-L-elsbetiae_contig724:7754..80811691683827.7163472-CDS-L-elsbetiae_contig724:7754..8081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig724 7755..8081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.6073563-UTR-L-elsbetiae_contig724:8081..83731622816806.6073563-UTR-L-elsbetiae_contig724:8081..8373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig724 8082..8373 +
1691683827.7297108-UTR-L-elsbetiae_contig724:8081..83731691683827.7297108-UTR-L-elsbetiae_contig724:8081..8373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig724 8082..8373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig724.16104.1prot_L-elsbetiae_contig724.16104.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig724 7755..8081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig724.16104.1

>prot_L-elsbetiae_contig724.16104.1 ID=prot_L-elsbetiae_contig724.16104.1|Name=mRNA_L-elsbetiae_contig724.16104.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
TILPRRFWGSRRIVTQRRCSAPRTGGGSGAGGLRDEAGRNERRGDTKKTM
FLLLSVAFLLAVVMVVVVVSLYFGDVVQGIRFLSYENQQPEHLTTPRGLA
AGNTNAPK*
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mRNA from alignment at L-elsbetiae_contig724:7755..8373+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig724.16104.1 ID=mRNA_L-elsbetiae_contig724.16104.1|Name=mRNA_L-elsbetiae_contig724.16104.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=619bp|location=Sequence derived from alignment at L-elsbetiae_contig724:7755..8373+ (Laminarionema elsbetiae ELsaHSoW15)
ACCATATTACCTCGTAGGTTTTGGGGTTCACGTAGAATCGTAACCCAGCG
GCGGTGTAGTGCTCCACGAACTGGAGGCGGGTCGGGAGCGGGAGGGTTGC
GGGATGAGGCAGGTAGGAACGAGCGGCGGGGAGACACGAAAAAAACTATG
TTCCTGCTGCTGTCGGTTGCGTTCTTGCTGGCAGTGGTGATGGTGGTGGT
GGTGGTGTCATTATATTTTGGCGATGTCGTTCAAGGAATTCGTTTTCTTT
CGTACGAAAATCAGCAACCTGAACATCTCACGACCCCACGGGGTCTGGCG
GCAGGCAACACAAACGCCCCGAAATAGACACCACACACAAAGTGTTCAAT
ATTCTGTGCGCATCGAGCAATTCGCTTTTTTGATCGCACTGCTTATTTGT
TATGTATACAGACAATTTGAAGGACCAAGTAGTGGAAAGAAGGGGGAGTA
AGACCCATGTTTAAGGGAAACAAATGTTGTGTAAAAAAATGTTGCGTAAA
AAATTATATTTTGACCTTTGGCCACTTTTCCTTGCCACGAGCTCGGAATC
AAATTTCCGCTTCTCAGGAACAGTCGGCGCTCTTGTCCAAAGGTCTACAG
ATCAACTGTCTAATCTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig724:7755..8373+

>mRNA_L-elsbetiae_contig724.16104.1 ID=mRNA_L-elsbetiae_contig724.16104.1|Name=mRNA_L-elsbetiae_contig724.16104.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig724:7755..8373+ (Laminarionema elsbetiae ELsaHSoW15)
ACCATATTACCTCGTAGGTTTTGGGGTTCACGTAGAATCGTAACCCAGCG
GCGGTGTAGTGCTCCACGAACTGGAGGCGGGTCGGGAGCGGGAGGGTTGC
GGGATGAGGCAGGTAGGAACGAGCGGCGGGGAGACACGAAAAAAACTATG
TTCCTGCTGCTGTCGGTTGCGTTCTTGCTGGCAGTGGTGATGGTGGTGGT
GGTGGTGTCATTATATTTTGGCGATGTCGTTCAAGGAATTCGTTTTCTTT
CGTACGAAAATCAGCAACCTGAACATCTCACGACCCCACGGGGTCTGGCG
GCAGGCAACACAAACGCCCCGAAATAGACCATATTACCTCGTAGGTTTTG
GGGTTCACGTAGAATCGTAACCCAGCGGCGGTGTAGTGCTCCACGAACTG
GAGGCGGGTCGGGAGCGGGAGGGTTGCGGGATGAGGCAGGTAGGAACGAG
CGGCGGGGAGACACGAAAAAAACTATGTTCCTGCTGCTGTCGGTTGCGTT
CTTGCTGGCAGTGGTGATGGTGGTGGTGGTGGTGTCATTATATTTTGGCG
ATGTCGTTCAAGGAATTCGTTTTCTTTCGTACGAAAATCAGCAACCTGAA
CATCTCACGACCCCACGGGGTCTGGCGGCAGGCAACACAAACGCCCCGAA
ATAG
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